4W8TA

Crystal structure of truncated hemolysin a q125s from p. mirabilis at 1.5 angstroms resolution
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
234
structure length
234
Chain Sequence
NGIVPDAGHQGPDVSAVNGGTQVINIVTPNNEGISHNQYQDFNVGKPGAVFNNALEAGQSQLAGHLNANSNLNGQAASLILNEVVSRNPSFLLGQSEVFGIAAEYVLSNPNGITCDGCGFINTSRSSLVVGNPLFENGQLKGYSTLNNTNLLSLGKNGLNTTGLLDLIAPRIDSRGKITAAEISAFTGQNTFSQHFDILSSQKPVSALDSYFFGSMQSGRIRIINTAEGSGVKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of truncated hemolysin A Q125S from P. mirabilis at 1.5 Angstroms resolution
rcsb
source organism Proteus mirabilis
molecule tags Toxin
molecule keywords Hemolysin
total genus 80
structure length 234
sequence length 234
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05860 Haemagg_act haemagglutination activity domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 4w8tA00
3B8YA 4XOTA 4U4BA 4OZYA 4URRA 1KTWA 1PLUA 4XLFA 3GQ7A 1HG8A 4OJPA 1O8KA 1DBGA 1VBLA 3UW0A 4YZAA 4W8SA 2NT6A 4XMYA 2PYHA 3WWGA 4U49A 1O8FA 2X6WA 1JRGA 1IA5A 2O0WA 2VJJA 4XONA 4I84A 1NHCA 1AIRA 2QXZA 4XLAA 3SUCA 3GQ8A 2Z8GA 3VSTA 1EE6A 4C2LA 1KCCA 3JURA 1QJVA 1O8IA 1O88A 2NSTA 1OFLA 3GQ9A 2QX3A 4XL9A 4PMHA 2INUA 3B4NA 3FY3A 2X6YA 1O8MA 3GRHA 4XLHA 4HWVA 1PE9A 4XN0A 2VBMA 2IQ7A 4W8QA 2NT9A 4NK6A 1OFMA 2NTPA 1BHEA 1OGMX 1IDKA 4YZ0A 2ODLA 4OZZA 4XM3A 2UVEA 4Z03A 1XG2A 4OJLA 4XN3A 2PYGA 4W8TA 5C1EA 1O8DA 4AVZA 1DBOA 4XLEA 2X3HA 1O8JA 3LMWA 3VMWA 1H80A 1OOCA 1O8GA 2UVFA 4XNFA 5AMVA 2INVA 4OJOA 3EQNA 1BN8A 1CZFA 4MR0A 1GQ8A 2VJIA 4Z06A 3VSVA 4XLCA 2VBEA 1QCXA 1RMGA 4XORA 1IB4A 1OGOX 2NTBA 1O8EA 4XQFA 3T9GA 4YZQA 4EW9A 4YELA 4NK8A 3EQOA 2VBKA 1K5CA 1X0CA 1PXZA 1RU4A 2O17A 2O1DA 4OJ5A 4XOPA 4W8RA 1O8HA 2EWEA 2NZMA 2PECA 3ZSCA 2X6XA 3B90A 4MXNA 4XKWA 4YEJA 1KCDA 2NTQA 2O0VA 4XR6A 2O04A 4Z05A 3GQAA 3KRGA 4OJ6A 1O8LA 3VSUA 3VMVA 1RWRA 2BSPA 1IDJA 4XKVA 1JTAA 1WMRA 3ZPPA 2X85A 4YZXA 5C1CA 2NSPA 2QY1A
chains in the Genus database with same CATH superfamily
3B8YA 3BH7B 2VFNA 4OZYA 4U4BA 4XOTA 3TH0A 2IOUG 4URRA 1KTWA 1PLUA 2XTWA 4XLFA 4YFOA 1TYWA 1QA3A 1L1IA 1QQ1A 3GQ7A 1HG8A 4OJPA 1LLZA 2VFPA 2J8IA 2QYUA 1O8KA 2VFMA 1DBGA 1VBLA 3UW0A 2XT2A 4W8SA 4YZAA 5JMCB 2G0YA 2NT6A 4XMYA 2PYHA 3WWGA 4U49A 1O8FA 2X6WA 1JRGA 1IA5A 1QRBA 3NB2A 2O0WA 1DABA 2VFQA 1LLWA 2VJJA 3JX8A 4XONA 2BX6A 4I84A 1NHCA 1AIRA 2QXZA 4XLAA 4OM9A 3PETA 2XTYA 3SUCA 3GQ8A 2Z8GA 2QZAA 5DNSA 1EE6A 3VSTA 4YEIA 4C2LA 1KCCA 3JURA 2J8KA 1QJVA 1O8IA 3LJYA 1O88A 2NSTA 1OFLA 3GQ9A 2QX3A 4XL9A 3AK5A 4PMHA 2INUA 3B4NA 3FY3A 2XTXA 2X6YA 1O8MA 4YCQA 3GRHA 4XLHA 1QA1A 4HWVA 1TYVA 2XT4A 1PE9A 2VFOA 2BM4A 2IQ7A 2VBMA 4V02C 1OFEA 2NT9A 4NK6A 1OFMA 4W8QA 1K4ZA 2NTPA 1BHEA 1OGMX 1IDKA 4YC5A 1TYUA 4YZ0A 2ODLA 1K8FA 4OZZA 4XM3A 2UVEA 4OPWA 4Z03A 1XG2A 4OJLA 2XC1A 2BM7A 2PYGA 4XN3A 4W8TA 5C1EA 1O8DA 3NAWA 3DU1X 4AVZA 1DBOA 3BH6B 2X3HA 4XLEA 1O8JA 3LMWA 4KH3A 2O6WA 3VMWA 1H80A 1OOCA 4XN0A 2V5IA 1O8GA 2UVFA 4XNFA 5AMVA 1OFDA 2INVA 3N90A 4OJOA 3EQNA 1BN8A 1CZFA 4MR0A 1GQ8A 2VJIA 4Z06A 3VSVA 4XLCA 2VBEA 1QCXA 1RMGA 4XORA 3LYCA 1IB4A 1OGOX 2NTBA 2BM6A 1O8EA 4YDTA 4XQFA 1CLWA 5JLVC 3T9GA 1TSPA 4YZQA 2YUHA 4JRAC 4EW9A 2B0RA 2W7ZA 1EA0A 1KQ5A 4YELA 4NK8A 3EQOA 2VBKA 1K5CA 3SZEA 1X0CA 3PSZA 1HF2A 1PXZA 1QRCA 1WXRA 1RU4A 1QA2A 3SQVA 2O17A 2O1DA 4OJ5A 4XOPA 4W8RA 1O8HA 2EWEA 2NZMA 2PECA 1LM1A 3N6ZA 3RIQA 3ZSCA 2X6XA 3B90A 4MXNA 4XKWA 4YEJA 1EZGA 1KCDA 1TYXA 2NTQA 2O0VA 4XR6A 2O04A 3H09A 3ML3A 3P4GA 4Z05A 2BM5A 3GQAA 3SYJA 3KRGA 4OJ6A 1O8LA 3VSUA 3VMVA 1RWRA 2BSPA 1IDJA 2F3LA 4XKVA 1JTAA 1WMRA 3PSSA 3SY2A 3ZPPA 2X85A 4YZXA 5C1CA 2NSPA 2QY1A
chains in the Genus database with same CATH topology
3B8YA 4XOTA 4U4BA 4OZYA 4URRA 1KTWA 1PLUA 4XLFA 3GQ7A 1HG8A 4OJPA 1O8KA 1DBGA 1VBLA 3UW0A 4YZAA 4W8SA 2NT6A 4XMYA 2PYHA 3WWGA 4U49A 1O8FA 2X6WA 1JRGA 1IA5A 2O0WA 2VJJA 4XONA 4I84A 1NHCA 1AIRA 2QXZA 4XLAA 3SUCA 3GQ8A 2Z8GA 3VSTA 1EE6A 4C2LA 1KCCA 3JURA 1QJVA 1O8IA 1O88A 2NSTA 1OFLA 3GQ9A 2QX3A 4XL9A 4PMHA 2INUA 3B4NA 3FY3A 2X6YA 1O8MA 3GRHA 4XLHA 4HWVA 1PE9A 4XN0A 2VBMA 2IQ7A 4W8QA 2NT9A 4NK6A 1OFMA 2NTPA 1BHEA 1OGMX 1IDKA 4YZ0A 2ODLA 4OZZA 4XM3A 2UVEA 4Z03A 1XG2A 4OJLA 4XN3A 2PYGA 4W8TA 5C1EA 1O8DA 4AVZA 1DBOA 4XLEA 2X3HA 1O8JA 3LMWA 3VMWA 1H80A 1OOCA 1O8GA 2UVFA 4XNFA 5AMVA 2INVA 4OJOA 3EQNA 1BN8A 1CZFA 4MR0A 1GQ8A 2VJIA 4Z06A 3VSVA 4XLCA 2VBEA 1QCXA 1RMGA 4XORA 1IB4A 1OGOX 2NTBA 1O8EA 4XQFA 3T9GA 4YZQA 4EW9A 4YELA 4NK8A 3EQOA 2VBKA 1K5CA 1X0CA 1PXZA 1RU4A 2O17A 2O1DA 4OJ5A 4XOPA 4W8RA 1O8HA 2EWEA 2NZMA 2PECA 3ZSCA 2X6XA 3B90A 4MXNA 4XKWA 4YEJA 1KCDA 2NTQA 2O0VA 4XR6A 2O04A 4Z05A 3GQAA 3KRGA 4OJ6A 1O8LA 3VSUA 3VMVA 1RWRA 2BSPA 1IDJA 4XKVA 1JTAA 1WMRA 3ZPPA 2X85A 4YZXA 5C1CA 2NSPA 2QY1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B8Y A;  4XOT A;  4U4B A;  4OZY A;  4URR A;  1KTW A;  1PLU A;  4XLF A;  3GQ7 A;  1HG8 A;  4OJP A;  1O8K A;  1DBG A;  1VBL A;  3UW0 A;  4YZA A;  4W8S A;  2NT6 A;  4XMY A;  2PYH A;  3WWG A;  4U49 A;  1O8F A;  2X6W A;  1JRG A;  1IA5 A;  2O0W A;  2VJJ A;  4XON A;  4I84 A;  1NHC A;  1AIR A;  2QXZ A;  4XLA A;  3SUC A;  3GQ8 A;  2Z8G A;  3VST A;  1EE6 A;  4C2L A;  1KCC A;  3JUR A;  1QJV A;  1O8I A;  1O88 A;  2NST A;  1OFL A;  3GQ9 A;  2QX3 A;  4XL9 A;  4PMH A;  2INU A;  3B4N A;  3FY3 A;  2X6Y A;  1O8M A;  3GRH A;  4XLH A;  4HWV A;  1PE9 A;  4XN0 A;  2VBM A;  2IQ7 A;  4W8Q A;  2NT9 A;  4NK6 A;  1OFM A;  2NTP A;  1BHE A;  1OGM X;  1IDK A;  4YZ0 A;  2ODL A;  4OZZ A;  4XM3 A;  2UVE A;  4Z03 A;  1XG2 A;  4OJL A;  4XN3 A;  2PYG A;  4W8T A;  5C1E A;  1O8D A;  4AVZ A;  1DBO A;  4XLE A;  2X3H A;  1O8J A;  3LMW A;  3VMW A;  1H80 A;  1OOC A;  1O8G A;  2UVF A;  4XNF A;  5AMV A;  2INV A;  4OJO A;  3EQN A;  1BN8 A;  1CZF A;  4MR0 A;  1GQ8 A;  2VJI A;  4Z06 A;  3VSV A;  4XLC A;  2VBE A;  1QCX A;  1RMG A;  4XOR A;  1IB4 A;  1OGO X;  2NTB A;  1O8E A;  4XQF A;  3T9G A;  4YZQ A;  4EW9 A;  4YEL A;  4NK8 A;  3EQO A;  2VBK A;  1K5C A;  1X0C A;  1PXZ A;  1RU4 A;  2O17 A;  2O1D A;  4OJ5 A;  4XOP A;  4W8R A;  1O8H A;  2EWE A;  2NZM A;  2PEC A;  3ZSC A;  2X6X A;  3B90 A;  4MXN A;  4XKW A;  4YEJ A;  1KCD A;  2NTQ A;  2O0V A;  4XR6 A;  2O04 A;  4Z05 A;  3GQA A;  3KRG A;  4OJ6 A;  1O8L A;  3VSU A;  3VMV A;  1RWR A;  2BSP A;  1IDJ A;  4XKV A;  1JTA A;  1WMR A;  3ZPP A;  2X85 A;  4YZX A;  5C1C A;  2NSP A;  2QY1 A; 
#chains in the Genus database with same CATH topology
 3B8Y A;  3BH7 B;  2VFN A;  4OZY A;  4U4B A;  4XOT A;  3TH0 A;  2IOU G;  4URR A;  1KTW A;  1PLU A;  2XTW A;  4XLF A;  4YFO A;  1TYW A;  1QA3 A;  1L1I A;  1QQ1 A;  3GQ7 A;  1HG8 A;  4OJP A;  1LLZ A;  2VFP A;  2J8I A;  2QYU A;  1O8K A;  2VFM A;  1DBG A;  1VBL A;  3UW0 A;  2XT2 A;  4W8S A;  4YZA A;  5JMC B;  2G0Y A;  2NT6 A;  4XMY A;  2PYH A;  3WWG A;  4U49 A;  1O8F A;  2X6W A;  1JRG A;  1IA5 A;  1QRB A;  3NB2 A;  2O0W A;  1DAB A;  2VFQ A;  1LLW A;  2VJJ A;  3JX8 A;  4XON A;  2BX6 A;  4I84 A;  1NHC A;  1AIR A;  2QXZ A;  4XLA A;  4OM9 A;  3PET A;  2XTY A;  3SUC A;  3GQ8 A;  2Z8G A;  2QZA A;  5DNS A;  1EE6 A;  3VST A;  4YEI A;  4C2L A;  1KCC A;  3JUR A;  2J8K A;  1QJV A;  1O8I A;  3LJY A;  1O88 A;  2NST A;  1OFL A;  3GQ9 A;  2QX3 A;  4XL9 A;  3AK5 A;  4PMH A;  2INU A;  3B4N A;  3FY3 A;  2XTX A;  2X6Y A;  1O8M A;  4YCQ A;  3GRH A;  4XLH A;  1QA1 A;  4HWV A;  1TYV A;  2XT4 A;  1PE9 A;  2VFO A;  2BM4 A;  2IQ7 A;  2VBM A;  4V02 C;  1OFE A;  2NT9 A;  4NK6 A;  1OFM A;  4W8Q A;  1K4Z A;  2NTP A;  1BHE A;  1OGM X;  1IDK A;  4YC5 A;  1TYU A;  4YZ0 A;  2ODL A;  1K8F A;  4OZZ A;  4XM3 A;  2UVE A;  4OPW A;  4Z03 A;  1XG2 A;  4OJL A;  2XC1 A;  2BM7 A;  2PYG A;  4XN3 A;  4W8T A;  5C1E A;  1O8D A;  3NAW A;  3DU1 X;  4AVZ A;  1DBO A;  3BH6 B;  2X3H A;  4XLE A;  1O8J A;  3LMW A;  4KH3 A;  2O6W A;  3VMW A;  1H80 A;  1OOC A;  4XN0 A;  2V5I A;  1O8G A;  2UVF A;  4XNF A;  5AMV A;  1OFD A;  2INV A;  3N90 A;  4OJO A;  3EQN A;  1BN8 A;  1CZF A;  4MR0 A;  1GQ8 A;  2VJI A;  4Z06 A;  3VSV A;  4XLC A;  2VBE A;  1QCX A;  1RMG A;  4XOR A;  3LYC A;  1IB4 A;  1OGO X;  2NTB A;  2BM6 A;  1O8E A;  4YDT A;  4XQF A;  1CLW A;  5JLV C;  3T9G A;  1TSP A;  4YZQ A;  2YUH A;  4JRA C;  4EW9 A;  2B0R A;  2W7Z A;  1EA0 A;  1KQ5 A;  4YEL A;  4NK8 A;  3EQO A;  2VBK A;  1K5C A;  3SZE A;  1X0C A;  3PSZ A;  1HF2 A;  1PXZ A;  1QRC A;  1WXR A;  1RU4 A;  1QA2 A;  3SQV A;  2O17 A;  2O1D A;  4OJ5 A;  4XOP A;  4W8R A;  1O8H A;  2EWE A;  2NZM A;  2PEC A;  1LM1 A;  3N6Z A;  3RIQ A;  3ZSC A;  2X6X A;  3B90 A;  4MXN A;  4XKW A;  4YEJ A;  1EZG A;  1KCD A;  1TYX A;  2NTQ A;  2O0V A;  4XR6 A;  2O04 A;  3H09 A;  3ML3 A;  3P4G A;  4Z05 A;  2BM5 A;  3GQA A;  3SYJ A;  3KRG A;  4OJ6 A;  1O8L A;  3VSU A;  3VMV A;  1RWR A;  2BSP A;  1IDJ A;  2F3L A;  4XKV A;  1JTA A;  1WMR A;  3PSS A;  3SY2 A;  3ZPP A;  2X85 A;  4YZX A;  5C1C A;  2NSP A;  2QY1 A; 
#chains in the Genus database with same CATH homology
 3B8Y A;  4XOT A;  4U4B A;  4OZY A;  4URR A;  1KTW A;  1PLU A;  4XLF A;  3GQ7 A;  1HG8 A;  4OJP A;  1O8K A;  1DBG A;  1VBL A;  3UW0 A;  4YZA A;  4W8S A;  2NT6 A;  4XMY A;  2PYH A;  3WWG A;  4U49 A;  1O8F A;  2X6W A;  1JRG A;  1IA5 A;  2O0W A;  2VJJ A;  4XON A;  4I84 A;  1NHC A;  1AIR A;  2QXZ A;  4XLA A;  3SUC A;  3GQ8 A;  2Z8G A;  3VST A;  1EE6 A;  4C2L A;  1KCC A;  3JUR A;  1QJV A;  1O8I A;  1O88 A;  2NST A;  1OFL A;  3GQ9 A;  2QX3 A;  4XL9 A;  4PMH A;  2INU A;  3B4N A;  3FY3 A;  2X6Y A;  1O8M A;  3GRH A;  4XLH A;  4HWV A;  1PE9 A;  4XN0 A;  2VBM A;  2IQ7 A;  4W8Q A;  2NT9 A;  4NK6 A;  1OFM A;  2NTP A;  1BHE A;  1OGM X;  1IDK A;  4YZ0 A;  2ODL A;  4OZZ A;  4XM3 A;  2UVE A;  4Z03 A;  1XG2 A;  4OJL A;  4XN3 A;  2PYG A;  4W8T A;  5C1E A;  1O8D A;  4AVZ A;  1DBO A;  4XLE A;  2X3H A;  1O8J A;  3LMW A;  3VMW A;  1H80 A;  1OOC A;  1O8G A;  2UVF A;  4XNF A;  5AMV A;  2INV A;  4OJO A;  3EQN A;  1BN8 A;  1CZF A;  4MR0 A;  1GQ8 A;  2VJI A;  4Z06 A;  3VSV A;  4XLC A;  2VBE A;  1QCX A;  1RMG A;  4XOR A;  1IB4 A;  1OGO X;  2NTB A;  1O8E A;  4XQF A;  3T9G A;  4YZQ A;  4EW9 A;  4YEL A;  4NK8 A;  3EQO A;  2VBK A;  1K5C A;  1X0C A;  1PXZ A;  1RU4 A;  2O17 A;  2O1D A;  4OJ5 A;  4XOP A;  4W8R A;  1O8H A;  2EWE A;  2NZM A;  2PEC A;  3ZSC A;  2X6X A;  3B90 A;  4MXN A;  4XKW A;  4YEJ A;  1KCD A;  2NTQ A;  2O0V A;  4XR6 A;  2O04 A;  4Z05 A;  3GQA A;  3KRG A;  4OJ6 A;  1O8L A;  3VSU A;  3VMV A;  1RWR A;  2BSP A;  1IDJ A;  4XKV A;  1JTA A;  1WMR A;  3ZPP A;  2X85 A;  4YZX A;  5C1C A;  2NSP A;  2QY1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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