4W9AA

Crystal structure of gamma-b crystallin expressed in e. coli based on mrna variant 2
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
172
structure length
172
Chain Sequence
GKITFYEDRGFQGHCYECSSDCPNLQPYFSRCNSIRVDSGCWMLYERPNYQGHQYFLRRGDYPDYQQWMGFNDSIRSCRLIPQHTGTFRMRIYERDDFRGQMSEITDDCPSLQDRFHLTEVHSLNVLEGSWVLYEMPSYRGRQYLLRPGEYRRYLDWGAMNAKVGSLRRVMD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Gamma-crystallin B
publication title Two synonymous gene variants encode proteins with identical sequence, but different folding conformations.
rcsb
source organism Bos taurus
total genus 48
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2014-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 4w9aA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 4w9aA01
2K1WA 1PRSA 2NBRA 1DSLA 2BB2A 4PSRA 2DADA 1YHPA 2G98A 2JDFA 2KFBA 1HA4A 3SNYA 4JGFA 1ZIRA 1HK0X 2M3CA 3ENUA 4GR7A 1ELPA 1HDFA 1ZIQA 1ZWMA 3ENTA 2M3UA 1GAMA 1PRRA 1OKIA 2A5MA 3SO0A 1ZWOA 3HZ2A 1E7NA 1BD7A 3I9HA 4NI3A 4IAUA 2B1OA 1ZIEA 2KP5A 1AG4A 3CW3A 3QK3A 1A7HA 4FD9A 4PSPA 1I5IA 4W9AA 2JDGA 2M3TA 1GCSA 2V2UA 1H4AX 1ZGTA 1AMMA 1BLBA 3IAJA 4GCRA 4EL6A 3SO1A 4AKAA 5HT8A 5HT9A 1YTQA 2BV2A 1A5DA 2K1XA 1NPSA 3HZBA 4W9BA 1A45A 3SNZA 3LWKA 1M8UA
chains in the Genus database with same CATH superfamily
4PSRA 1HA4A 4JGFA 3ENUA 4GR7A 1HDFA 1ZIQA 3ENTA 2A5MA 1ZWOA 3HZ2A 4NI3A 1I5IA 2M3TA 1GH5A 1AMMA 3IAJA 4EL6A 5HT8A 2K1XA 3I9HA 4W9BA 3LWKA 3SNYA 2KFBA 1G6EA 1HK0X 2M3CA 1ELPA 2M3UA 1PRRA 3SO0A 1E7NA 2B1OA 1ZIEA 2KP5A 1AG4A 3CW3A 1A7HA 4FD9A 1GCSA 1H4AX 1BHUA 4GCRA 1YTQA 2BV2A 1A5DA 1A45A 3UJZA 1M8UA 1C01A 1WKTA 2JDFA 2G98A 1ZWMA 1GAMA 4W9AA 2V2UA 1BLBA 3SO1A 4AKAA 1NPSA 1F53A 2K1WA 1PRSA 2NBRA 1DSLA 2BB2A 2DADA 1YHPA 1ZIRA 1OKIA 1BD7A 3QK3A 4PSPA 1ZGTA 5HT9A 3HZBA 3SNZA 2JDGA 4IAUA
chains in the Genus database with same CATH topology
2K1WA 1PRSA 2NBRA 1DSLA 2BB2A 4PSRA 2DADA 1YHPA 2G98A 2JDFA 2KFBA 1HA4A 3SNYA 4JGFA 1ZIRA 1HK0X 2M3CA 3ENUA 4GR7A 1ELPA 1HDFA 1ZIQA 1ZWMA 3ENTA 2M3UA 1GAMA 1PRRA 1OKIA 2A5MA 3SO0A 1ZWOA 3HZ2A 1E7NA 1BD7A 3I9HA 4NI3A 4IAUA 2B1OA 1ZIEA 2KP5A 1AG4A 3CW3A 3QK3A 1A7HA 4FD9A 4PSPA 1I5IA 4W9AA 2JDGA 2M3TA 1GCSA 2V2UA 1H4AX 1ZGTA 1AMMA 1BLBA 3IAJA 4GCRA 4EL6A 3SO1A 4AKAA 5HT8A 5HT9A 1YTQA 2BV2A 1A5DA 2K1XA 1NPSA 3HZBA 4W9BA 1A45A 3SNZA 3LWKA 1M8UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K1W A;  1PRS A;  2NBR A;  1DSL A;  2BB2 A;  4PSR A;  2DAD A;  1YHP A;  2G98 A;  2JDF A;  2KFB A;  1HA4 A;  3SNY A;  4JGF A;  1ZIR A;  1HK0 X;  2M3C A;  3ENU A;  4GR7 A;  1ELP A;  1HDF A;  1ZIQ A;  1ZWM A;  3ENT A;  2M3U A;  1GAM A;  1PRR A;  1OKI A;  2A5M A;  3SO0 A;  1ZWO A;  3HZ2 A;  1E7N A;  1BD7 A;  3I9H A;  4NI3 A;  4IAU A;  2B1O A;  1ZIE A;  2KP5 A;  1AG4 A;  3CW3 A;  3QK3 A;  1A7H A;  4FD9 A;  4PSP A;  1I5I A;  4W9A A;  2JDG A;  2M3T A;  1GCS A;  2V2U A;  1H4A X;  1ZGT A;  1AMM A;  1BLB A;  3IAJ A;  4GCR A;  4EL6 A;  3SO1 A;  4AKA A;  5HT8 A;  5HT9 A;  1YTQ A;  2BV2 A;  1A5D A;  2K1X A;  1NPS A;  3HZB A;  4W9B A;  1A45 A;  3SNZ A;  3LWK A;  1M8U A; 
#chains in the Genus database with same CATH topology
 4PSR A;  1HA4 A;  4JGF A;  3ENU A;  4GR7 A;  1HDF A;  1ZIQ A;  3ENT A;  2A5M A;  1ZWO A;  3HZ2 A;  4NI3 A;  1I5I A;  2M3T A;  1GH5 A;  1AMM A;  3IAJ A;  4EL6 A;  5HT8 A;  2K1X A;  3I9H A;  4W9B A;  3LWK A;  3SNY A;  2KFB A;  1G6E A;  1HK0 X;  2M3C A;  1ELP A;  2M3U A;  1PRR A;  3SO0 A;  1E7N A;  2B1O A;  1ZIE A;  2KP5 A;  1AG4 A;  3CW3 A;  1A7H A;  4FD9 A;  1GCS A;  1H4A X;  1BHU A;  4GCR A;  1YTQ A;  2BV2 A;  1A5D A;  1A45 A;  3UJZ A;  1M8U A;  1C01 A;  1WKT A;  2JDF A;  2G98 A;  1ZWM A;  1GAM A;  4W9A A;  2V2U A;  1BLB A;  3SO1 A;  4AKA A;  1NPS A;  1F53 A;  2K1W A;  1PRS A;  2NBR A;  1DSL A;  2BB2 A;  2DAD A;  1YHP A;  1ZIR A;  1OKI A;  1BD7 A;  3QK3 A;  4PSP A;  1ZGT A;  5HT9 A;  3HZB A;  3SNZ A;  2JDG A;  4IAU A; 
#chains in the Genus database with same CATH homology
 2K1W A;  1PRS A;  2NBR A;  1DSL A;  2BB2 A;  4PSR A;  2DAD A;  1YHP A;  2G98 A;  2JDF A;  2KFB A;  1HA4 A;  3SNY A;  4JGF A;  1ZIR A;  1HK0 X;  2M3C A;  3ENU A;  4GR7 A;  1ELP A;  1HDF A;  1ZIQ A;  1ZWM A;  3ENT A;  2M3U A;  1GAM A;  1PRR A;  1OKI A;  2A5M A;  3SO0 A;  1ZWO A;  3HZ2 A;  1E7N A;  1BD7 A;  3I9H A;  4NI3 A;  4IAU A;  2B1O A;  1ZIE A;  2KP5 A;  1AG4 A;  3CW3 A;  3QK3 A;  1A7H A;  4FD9 A;  4PSP A;  1I5I A;  4W9A A;  2JDG A;  2M3T A;  1GCS A;  2V2U A;  1H4A X;  1ZGT A;  1AMM A;  1BLB A;  3IAJ A;  4GCR A;  4EL6 A;  3SO1 A;  4AKA A;  5HT8 A;  5HT9 A;  1YTQ A;  2BV2 A;  1A5D A;  2K1X A;  1NPS A;  3HZB A;  4W9B A;  1A45 A;  3SNZ A;  3LWK A;  1M8U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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