4WANA

Crystal structure of msl5 protein in complex with rna at 1.8 a
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
124
structure length
124
Chain Sequence
PTKFQDKYYIPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDLPPGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding/rna
source organism Saccharomyces cerevisiae
publication title Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs.
pubmed doi rcsb
molecule keywords Branchpoint-bridging protein
total genus 37
structure length 124
sequence length 124
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4wanA00
1ZTGA 4JVYA 4AM3A 2NN6G 1WE8A 4BA1I 4AIMA 1K1GA 2CTKA 2BA0A 2HH3A 5JEAG 1VIHA 2JE6I 2PY9A 4B8TA 2CTMA 4NBQA 4QMFB 3L7ZC 1TUAA 2BL5A 4WALA 2AXYA 3AEVB 1EC6A 1KHMA 1WVNA 2CTFA 1J5KA 3U1KA 4OO1G 2OPUA 2CTJA 1X4NA 1DTJA 2HH2A 4IFDG 4WANA 1ZZKA 4LIJA 1X4MA 5C0XG 2P2RA 2PQUA 2Z0SA 2JEBI 2YQRA 2QNDA 3V69A 1J4WA 2JEAI 5K36G 2E3UA 1DT4A 2MJHA 2OPVA 2JA9A 2CTLA 2CPQA 3VKEA 1ZZJA 4JVHA 4BA2I 2JZXA 2DGRA 1VIGA 2CTEA 1ZZIA 2ANNA 2ANRA 2JVZA 2FMRA
chains in the Genus database with same CATH superfamily
1PQXA 4LF4H 3NCVA 1SEIA 2Y3MA 2A1SA 4JVYA 4LFCH 3OETA 3EZJA 3GR5A 2FFMA 1K1GA 2CTKA 2FPHX 3J80W 1J5EH 4JI0H 2HH3A 3OSSD 3J81W 4NBQA 1AN7A 3L7ZC 1TUAA 4KHPH 3FAUA 1VBIA 1NXUA 2UXCH 2CTFA 4B3MH 2M8WA 2HH2A 4JV5H 4DR3H 1I6UA 5C0XG 5LMNH 4X66H 4JI4H 2CPMA 1N33H 1J4WA 2G8YA 1V9NA 2UXDH 4B3RH 1X9ZA 1F0XA 1Z2IA 2CPQA 4DV5H 3VKEA 4DR7H 4LFBH 4LF8H 2DGRA 2UUBH 4GKKH 1HNZH 4DV3H 2ANRA 4IFDG 1IBMH 4JI2H 1UG8A 4AM3A 2F4VH 2LTMA 4LF6H 3UOEA 1IBKH 2JE6I 1S03G 2PY9A 4DR6H 4DUYH 1S20A 4QMFB 1KHMA 4DR1H 1IBLH 1WVNA 3GABA 4B8CD 2UXBH 1X4NA 1XMQH 3J7AK 5FLXW 1X4MA 2P2RA 1N32H 2Z0SA 2YQRA 3SB1A 4YHHH 1ODHA 2UU9H 4JYAH 2MJHA 4FJSA 4LF7H 2OPVA 3I0PA 2JA9A 2CTLA 1ZZJA 2UUAH 1XNQH 4OX9H 4BA2I 4NXMH 1VIGA 2CTEA 2FMRA 2O4CA 1ZTGA 4B3SH 4JI3H 1XNRH 1MSZA 1XRHA 4YY3H 4DUZH 2PT7G 4AIMA 4DV7H 2K1HA 5JEAG 1VIHA 4B8TA 3QD7X 4PDBA 2BL5A 4WALA 2CWFA 2ZM6H 1HR0H 4DV0H 4JI5H 3AEVB 1HNWH 1J5KA 4NZTM 1N34H 4OO1G 2CTJA 4DR5H 1ZZKA 4H8AA 2M6QA 4LFAH 4EC5A 2JEBI 3V69A 1HNXH 4NZRM 4FJUA 2LTLA 2E3UA 2LRRA 2E5LH 5K36G 3KDGA 4GKJH 1FJGH 4AQYH 5LL6b 5LMUH 2CWHA 2VQFH 4JI7H 4JI8H 4DV1H 4JVHA 2JZXA 2ZQEA 4X65H 1I94H 1ZZIA 5IT9W 5A2QW 2ANNA 2VKCA 4NXNH 2NN6G 1WE8A 4BA1I 4E9JA 3T1YH 1WTJA 2BA0A 4DR2H 4JI6H 1WHRA 1X0AA 2CTMA 4DR4H 4JI1H 1FKAH 2AXYA 4X62H 2UUCH 1EC6A 2LF0A 3OTOH 3T1HH 5BR8H 3U1KA 3KDKA 2OPUA 1DTJA 5DT9A 4WANA 4DV6H 4LIJA 2PQUA 4G08A 3JAMW 2QNDA 2D9IA 1N36H 2JEAI 5IWAH 1V8CA 1DT4A 4DV4H 4X64H 1XMOH 2VQEH 4LF5H 3RF2A 4K0KH 4DV2H 4B3TH 2HHHH 4OCHA 4LF9H 2X06A 3GKUA 4OD6A 2JVZA
chains in the Genus database with same CATH topology
1ZTGA 4JVYA 4AM3A 2NN6G 1WE8A 4BA1I 4AIMA 1K1GA 2CTKA 2BA0A 2HH3A 5JEAG 1VIHA 2JE6I 2PY9A 4B8TA 2CTMA 4NBQA 4QMFB 3L7ZC 1TUAA 2BL5A 4WALA 2AXYA 3AEVB 1EC6A 1KHMA 1WVNA 2CTFA 1J5KA 3U1KA 4OO1G 2OPUA 2CTJA 1X4NA 1DTJA 2HH2A 4IFDG 4WANA 1ZZKA 4LIJA 1X4MA 5C0XG 2P2RA 2PQUA 2Z0SA 2JEBI 2YQRA 2QNDA 3V69A 1J4WA 2JEAI 5K36G 2E3UA 1DT4A 2MJHA 2OPVA 2JA9A 2CTLA 2CPQA 3VKEA 1ZZJA 4JVHA 4BA2I 2JZXA 2DGRA 1VIGA 2CTEA 1ZZIA 2ANNA 2ANRA 2JVZA 2FMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZTG A;  4JVY A;  4AM3 A;  2NN6 G;  1WE8 A;  4BA1 I;  4AIM A;  1K1G A;  2CTK A;  2BA0 A;  2HH3 A;  5JEA G;  1VIH A;  2JE6 I;  2PY9 A;  4B8T A;  2CTM A;  4NBQ A;  4QMF B;  3L7Z C;  1TUA A;  2BL5 A;  4WAL A;  2AXY A;  3AEV B;  1EC6 A;  1KHM A;  1WVN A;  2CTF A;  1J5K A;  3U1K A;  4OO1 G;  2OPU A;  2CTJ A;  1X4N A;  1DTJ A;  2HH2 A;  4IFD G;  4WAN A;  1ZZK A;  4LIJ A;  1X4M A;  5C0X G;  2P2R A;  2PQU A;  2Z0S A;  2JEB I;  2YQR A;  2QND A;  3V69 A;  1J4W A;  2JEA I;  5K36 G;  2E3U A;  1DT4 A;  2MJH A;  2OPV A;  2JA9 A;  2CTL A;  2CPQ A;  3VKE A;  1ZZJ A;  4JVH A;  4BA2 I;  2JZX A;  2DGR A;  1VIG A;  2CTE A;  1ZZI A;  2ANN A;  2ANR A;  2JVZ A;  2FMR A; 
#chains in the Genus database with same CATH topology
 1PQX A;  4LF4 H;  3NCV A;  1SEI A;  2Y3M A;  2A1S A;  4JVY A;  4LFC H;  3OET A;  3EZJ A;  3GR5 A;  2FFM A;  1K1G A;  2CTK A;  2FPH X;  3J80 W;  1J5E H;  4JI0 H;  2HH3 A;  3OSS D;  3J81 W;  4NBQ A;  1AN7 A;  3L7Z C;  1TUA A;  4KHP H;  3FAU A;  1VBI A;  1NXU A;  2UXC H;  2CTF A;  4B3M H;  2M8W A;  2HH2 A;  4JV5 H;  4DR3 H;  1I6U A;  5C0X G;  5LMN H;  4X66 H;  4JI4 H;  2CPM A;  1N33 H;  1J4W A;  2G8Y A;  1V9N A;  2UXD H;  4B3R H;  1X9Z A;  1F0X A;  1Z2I A;  2CPQ A;  4DV5 H;  3VKE A;  4DR7 H;  4LFB H;  4LF8 H;  2DGR A;  2UUB H;  4GKK H;  1HNZ H;  4DV3 H;  2ANR A;  4IFD G;  1IBM H;  4JI2 H;  1UG8 A;  4AM3 A;  2F4V H;  2LTM A;  4LF6 H;  3UOE A;  1IBK H;  2JE6 I;  1S03 G;  2PY9 A;  4DR6 H;  4DUY H;  1S20 A;  4QMF B;  1KHM A;  4DR1 H;  1IBL H;  1WVN A;  3GAB A;  4B8C D;  2UXB H;  1X4N A;  1XMQ H;  3J7A K;  5FLX W;  1X4M A;  2P2R A;  1N32 H;  2Z0S A;  2YQR A;  3SB1 A;  4YHH H;  1ODH A;  2UU9 H;  4JYA H;  2MJH A;  4FJS A;  4LF7 H;  2OPV A;  3I0P A;  2JA9 A;  2CTL A;  1ZZJ A;  2UUA H;  1XNQ H;  4OX9 H;  4BA2 I;  4NXM H;  1VIG A;  2CTE A;  2FMR A;  2O4C A;  1ZTG A;  4B3S H;  4JI3 H;  1XNR H;  1MSZ A;  1XRH A;  4YY3 H;  4DUZ H;  2PT7 G;  4AIM A;  4DV7 H;  2K1H A;  5JEA G;  1VIH A;  4B8T A;  3QD7 X;  4PDB A;  2BL5 A;  4WAL A;  2CWF A;  2ZM6 H;  1HR0 H;  4DV0 H;  4JI5 H;  3AEV B;  1HNW H;  1J5K A;  4NZT M;  1N34 H;  4OO1 G;  2CTJ A;  4DR5 H;  1ZZK A;  4H8A A;  2M6Q A;  4LFA H;  4EC5 A;  2JEB I;  3V69 A;  1HNX H;  4NZR M;  4FJU A;  2LTL A;  2E3U A;  2LRR A;  2E5L H;  5K36 G;  3KDG A;  4GKJ H;  1FJG H;  4AQY H;  5LL6 b;  5LMU H;  2CWH A;  2VQF H;  4JI7 H;  4JI8 H;  4DV1 H;  4JVH A;  2JZX A;  2ZQE A;  4X65 H;  1I94 H;  1ZZI A;  5IT9 W;  5A2Q W;  2ANN A;  2VKC A;  4NXN H;  2NN6 G;  1WE8 A;  4BA1 I;  4E9J A;  3T1Y H;  1WTJ A;  2BA0 A;  4DR2 H;  4JI6 H;  1WHR A;  1X0A A;  2CTM A;  4DR4 H;  4JI1 H;  1FKA H;  2AXY A;  4X62 H;  2UUC H;  1EC6 A;  2LF0 A;  3OTO H;  3T1H H;  5BR8 H;  3U1K A;  3KDK A;  2OPU A;  1DTJ A;  5DT9 A;  4WAN A;  4DV6 H;  4LIJ A;  2PQU A;  4G08 A;  3JAM W;  2QND A;  2D9I A;  1N36 H;  2JEA I;  5IWA H;  1V8C A;  1DT4 A;  4DV4 H;  4X64 H;  1XMO H;  2VQE H;  4LF5 H;  3RF2 A;  4K0K H;  4DV2 H;  4B3T H;  2HHH H;  4OCH A;  4LF9 H;  2X06 A;  3GKU A;  4OD6 A;  2JVZ A; 
#chains in the Genus database with same CATH homology
 1ZTG A;  4JVY A;  4AM3 A;  2NN6 G;  1WE8 A;  4BA1 I;  4AIM A;  1K1G A;  2CTK A;  2BA0 A;  2HH3 A;  5JEA G;  1VIH A;  2JE6 I;  2PY9 A;  4B8T A;  2CTM A;  4NBQ A;  4QMF B;  3L7Z C;  1TUA A;  2BL5 A;  4WAL A;  2AXY A;  3AEV B;  1EC6 A;  1KHM A;  1WVN A;  2CTF A;  1J5K A;  3U1K A;  4OO1 G;  2OPU A;  2CTJ A;  1X4N A;  1DTJ A;  2HH2 A;  4IFD G;  4WAN A;  1ZZK A;  4LIJ A;  1X4M A;  5C0X G;  2P2R A;  2PQU A;  2Z0S A;  2JEB I;  2YQR A;  2QND A;  3V69 A;  1J4W A;  2JEA I;  5K36 G;  2E3U A;  1DT4 A;  2MJH A;  2OPV A;  2JA9 A;  2CTL A;  2CPQ A;  3VKE A;  1ZZJ A;  4JVH A;  4BA2 I;  2JZX A;  2DGR A;  1VIG A;  2CTE A;  1ZZI A;  2ANN A;  2ANR A;  2JVZ A;  2FMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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