4WANA

Crystal structure of msl5 protein in complex with rna at 1.8 a
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
124
structure length
124
Chain Sequence
b'PTKFQDKYYIPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDLPPGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLRE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs.
pubmed doi rcsb
molecule keywords Branchpoint-bridging protein
source organism Saccharomyces cerevisiae
molecule tags Protein binding/rna
total genus 37
structure length 124
sequence length 124
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4wanA00
1ZTGA 2JA9A 3AEVB 4IFDG 2E3UA 2ANNA 4WANA 1ZZJA 1J4WA 4BA2I 4BA1I 1DT4A 2CTMA 4QMFB 4B8TA 1ZZIA 2PQUA 2CTEA 2P2RA 2JE6I 1WE8A 4JVHA 1VIHA 1ZZKA 5C0XG 1DTJA 2PY9A 1KHMA 1TUAA 2CTKA 2JVZA 2JZXA 1X4MA 1J5KA 2HH3A 1VIGA 2BL5A 3U1KA 5K36G 2QNDA 2MJHA 1X4NA 2HH2A 4WALA 2AXYA 2ANRA 2Z0SA 2FMRA 2OPUA 4NBQA 3V69A 4AM3A 5JEAG 2CTLA 3VKEA 4LIJA 4OO1G 4AIMA 2BA0A 2DGRA 2OPVA 2CTJA 2CTFA 2YQRA 2CPQA 3L7ZC 2JEBI 2NN6G 2JEAI 4JVYA 1K1GA 1EC6A 1WVNA
chains in the Genus database with same CATH superfamily
3AEVB 1IBKH 4JV5H 4PDBA 4JI1H 1ZZJA 1J4WA 1DT4A 2E5LH 1S03G 4JI2H 5IT9W 4OX9H 4LF8H 1NXUA 1I6UA 1Z2IA 4LFAH 1WHRA 1MSZA 1FJGH 4X66H 5FLXW 4B3MH 4LF7H 3OSSD 1XMQH 4JI6H 1VIGA 5K36G 3U1KA 2QNDA 3FAUA 2UXBH 1N34H 4AQYH 2VKCA 4KHPH 1X4NA 3J80W 1X9ZA 3KDGA 4JYAH 4LFBH 2K1HA 2OPUA 4NBQA 3J81W 4OO1G 4DR1H 3T1HH 2CTFA 1J5EH 2M6QA 2CPQA 2YQRA 2JEBI 4OCHA 2VQEH 2JEAI 1K1GA 2LTMA 1VBIA 4B3RH 4IFDG 2E3UA 4WANA 4DV4H 4DV5H 5LMNH 4NXMH 2UXDH 4DR5H 2LF0A 4FJUA 2CTEA 3T1YH 1IBLH 1WTJA 5BR8H 1ZZKA 3QD7X 2UXCH 1DTJA 2LRRA 1N36H 2F4VH 1N33H 1N32H 2VQFH 2BL5A 4DR4H 3SB1A 2HHHH 3NCVA 2A1SA 2AXYA 3RF2A 2ANRA 2Z0SA 2UUBH 3V69A 4AM3A 4DR3H 1PQXA 5JEAG 4DUYH 4LIJA 1F0XA 1XMOH 2O4CA 1S20A 5IWAH 2CTJA 3L7ZC 1V8CA 2NN6G 4DV1H 4LF9H 2D9IA 2CWFA 4NZRM 3GABA 1ZTGA 4K0KH 4JI3H 4E9JA 5LL6b 4YY3H 4B3TH 4LF4H 4DV6H 2PT7G 1AN7A 4QMFB 4BA1I 4B8TA 4X65H 4DUZH 1ZZIA 2Y3MA 1HR0H 2P2RA 2PQUA 2JE6I 4JVHA 3UOEA 4B8CD 1HNXH 5C0XG 2PY9A 1KHMA 1TUAA 2CTKA 2ZM6H 2JZXA 2UUAH 1J5KA 4X64H 4YHHH 4LF6H 4JI5H 4GKKH 3J7AK 1SEIA 3EZJA 1ODHA 2FMRA 1FKAH 2FPHX 1HNWH 4DV0H 5A2QW 1UG8A 2G8YA 3OETA 4DV2H 3VKEA 2UUCH 3GKUA 4DR2H 3GR5A 2CWHA 4B3SH 4JI4H 2DGRA 4JVYA 4DR7H 1EC6A 2ZQEA 2JA9A 1V9NA 4H8AA 2UU9H 2ANNA 2FFMA 4NZTM 4LFCH 4BA2I 2CTMA 4EC5A 2CPMA 5DT9A 4JI7H 1WE8A 1XNQH 1VIHA 1IBMH 4GKJH 1XRHA 3I0PA 2JVZA 3JAMW 2X06A 1X4MA 4DR6H 2HH3A 3KDKA 2LTLA 4DV3H 1HNZH 1I94H 2MJHA 4JI0H 4JI8H 4LF5H 4NXNH 1X0AA 2HH2A 4WALA 4X62H 5LMUH 2M8WA 4FJSA 4OD6A 2CTLA 3OTOH 4G08A 4AIMA 2BA0A 2OPVA 4DV7H 1XNRH 1WVNA
chains in the Genus database with same CATH topology
1ZTGA 2JA9A 3AEVB 4IFDG 2E3UA 2ANNA 4WANA 1ZZJA 1J4WA 4BA2I 4BA1I 1DT4A 2CTMA 4QMFB 4B8TA 1ZZIA 2PQUA 2CTEA 2P2RA 2JE6I 1WE8A 4JVHA 1VIHA 1ZZKA 5C0XG 1DTJA 2PY9A 1KHMA 1TUAA 2CTKA 2JVZA 2JZXA 1X4MA 1J5KA 2HH3A 1VIGA 2BL5A 3U1KA 5K36G 2QNDA 2MJHA 1X4NA 2HH2A 4WALA 2AXYA 2ANRA 2Z0SA 2FMRA 2OPUA 4NBQA 3V69A 4AM3A 5JEAG 2CTLA 3VKEA 4LIJA 4OO1G 4AIMA 2BA0A 2DGRA 2OPVA 2CTJA 2CTFA 2YQRA 2CPQA 3L7ZC 2JEBI 2NN6G 2JEAI 4JVYA 1K1GA 1EC6A 1WVNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZTG A;  2JA9 A;  3AEV B;  4IFD G;  2E3U A;  2ANN A;  4WAN A;  1ZZJ A;  1J4W A;  4BA2 I;  4BA1 I;  1DT4 A;  2CTM A;  4QMF B;  4B8T A;  1ZZI A;  2PQU A;  2CTE A;  2P2R A;  2JE6 I;  1WE8 A;  4JVH A;  1VIH A;  1ZZK A;  5C0X G;  1DTJ A;  2PY9 A;  1KHM A;  1TUA A;  2CTK A;  2JVZ A;  2JZX A;  1X4M A;  1J5K A;  2HH3 A;  1VIG A;  2BL5 A;  3U1K A;  5K36 G;  2QND A;  2MJH A;  1X4N A;  2HH2 A;  4WAL A;  2AXY A;  2ANR A;  2Z0S A;  2FMR A;  2OPU A;  4NBQ A;  3V69 A;  4AM3 A;  5JEA G;  2CTL A;  3VKE A;  4LIJ A;  4OO1 G;  4AIM A;  2BA0 A;  2DGR A;  2OPV A;  2CTJ A;  2CTF A;  2YQR A;  2CPQ A;  3L7Z C;  2JEB I;  2NN6 G;  2JEA I;  4JVY A;  1K1G A;  1EC6 A;  1WVN A; 
#chains in the Genus database with same CATH topology
 3AEV B;  1IBK H;  4JV5 H;  4PDB A;  4JI1 H;  1ZZJ A;  1J4W A;  1DT4 A;  2E5L H;  1S03 G;  4JI2 H;  5IT9 W;  4OX9 H;  4LF8 H;  1NXU A;  1I6U A;  1Z2I A;  4LFA H;  1WHR A;  1MSZ A;  1FJG H;  4X66 H;  5FLX W;  4B3M H;  4LF7 H;  3OSS D;  1XMQ H;  4JI6 H;  1VIG A;  5K36 G;  3U1K A;  2QND A;  3FAU A;  2UXB H;  1N34 H;  4AQY H;  2VKC A;  4KHP H;  1X4N A;  3J80 W;  1X9Z A;  3KDG A;  4JYA H;  4LFB H;  2K1H A;  2OPU A;  4NBQ A;  3J81 W;  4OO1 G;  4DR1 H;  3T1H H;  2CTF A;  1J5E H;  2M6Q A;  2CPQ A;  2YQR A;  2JEB I;  4OCH A;  2VQE H;  2JEA I;  1K1G A;  2LTM A;  1VBI A;  4B3R H;  4IFD G;  2E3U A;  4WAN A;  4DV4 H;  4DV5 H;  5LMN H;  4NXM H;  2UXD H;  4DR5 H;  2LF0 A;  4FJU A;  2CTE A;  3T1Y H;  1IBL H;  1WTJ A;  5BR8 H;  1ZZK A;  3QD7 X;  2UXC H;  1DTJ A;  2LRR A;  1N36 H;  2F4V H;  1N33 H;  1N32 H;  2VQF H;  2BL5 A;  4DR4 H;  3SB1 A;  2HHH H;  3NCV A;  2A1S A;  2AXY A;  3RF2 A;  2ANR A;  2Z0S A;  2UUB H;  3V69 A;  4AM3 A;  4DR3 H;  1PQX A;  5JEA G;  4DUY H;  4LIJ A;  1F0X A;  1XMO H;  2O4C A;  1S20 A;  5IWA H;  2CTJ A;  3L7Z C;  1V8C A;  2NN6 G;  4DV1 H;  4LF9 H;  2D9I A;  2CWF A;  4NZR M;  3GAB A;  1ZTG A;  4K0K H;  4JI3 H;  4E9J A;  5LL6 b;  4YY3 H;  4B3T H;  4LF4 H;  4DV6 H;  2PT7 G;  1AN7 A;  4QMF B;  4BA1 I;  4B8T A;  4X65 H;  4DUZ H;  1ZZI A;  2Y3M A;  1HR0 H;  2P2R A;  2PQU A;  2JE6 I;  4JVH A;  3UOE A;  4B8C D;  1HNX H;  5C0X G;  2PY9 A;  1KHM A;  1TUA A;  2CTK A;  2ZM6 H;  2JZX A;  2UUA H;  1J5K A;  4X64 H;  4YHH H;  4LF6 H;  4JI5 H;  4GKK H;  3J7A K;  1SEI A;  3EZJ A;  1ODH A;  2FMR A;  1FKA H;  2FPH X;  1HNW H;  4DV0 H;  5A2Q W;  1UG8 A;  2G8Y A;  3OET A;  4DV2 H;  3VKE A;  2UUC H;  3GKU A;  4DR2 H;  3GR5 A;  2CWH A;  4B3S H;  4JI4 H;  2DGR A;  4JVY A;  4DR7 H;  1EC6 A;  2ZQE A;  2JA9 A;  1V9N A;  4H8A A;  2UU9 H;  2ANN A;  2FFM A;  4NZT M;  4LFC H;  4BA2 I;  2CTM A;  4EC5 A;  2CPM A;  5DT9 A;  4JI7 H;  1WE8 A;  1XNQ H;  1VIH A;  1IBM H;  4GKJ H;  1XRH A;  3I0P A;  2JVZ A;  3JAM W;  2X06 A;  1X4M A;  4DR6 H;  2HH3 A;  3KDK A;  2LTL A;  4DV3 H;  1HNZ H;  1I94 H;  2MJH A;  4JI0 H;  4JI8 H;  4LF5 H;  4NXN H;  1X0A A;  2HH2 A;  4WAL A;  4X62 H;  5LMU H;  2M8W A;  4FJS A;  4OD6 A;  2CTL A;  3OTO H;  4G08 A;  4AIM A;  2BA0 A;  2OPV A;  4DV7 H;  1XNR H;  1WVN A; 
#chains in the Genus database with same CATH homology
 1ZTG A;  2JA9 A;  3AEV B;  4IFD G;  2E3U A;  2ANN A;  4WAN A;  1ZZJ A;  1J4W A;  4BA2 I;  4BA1 I;  1DT4 A;  2CTM A;  4QMF B;  4B8T A;  1ZZI A;  2PQU A;  2CTE A;  2P2R A;  2JE6 I;  1WE8 A;  4JVH A;  1VIH A;  1ZZK A;  5C0X G;  1DTJ A;  2PY9 A;  1KHM A;  1TUA A;  2CTK A;  2JVZ A;  2JZX A;  1X4M A;  1J5K A;  2HH3 A;  1VIG A;  2BL5 A;  3U1K A;  5K36 G;  2QND A;  2MJH A;  1X4N A;  2HH2 A;  4WAL A;  2AXY A;  2ANR A;  2Z0S A;  2FMR A;  2OPU A;  4NBQ A;  3V69 A;  4AM3 A;  5JEA G;  2CTL A;  3VKE A;  4LIJ A;  4OO1 G;  4AIM A;  2BA0 A;  2DGR A;  2OPV A;  2CTJ A;  2CTF A;  2YQR A;  2CPQ A;  3L7Z C;  2JEB I;  2NN6 G;  2JEA I;  4JVY A;  1K1G A;  1EC6 A;  1WVN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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