4WANA

Crystal structure of msl5 protein in complex with rna at 1.8 a
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
124
structure length
124
Chain Sequence
PTKFQDKYYIPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDLPPGAMNFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding/rna
molecule keywords Branchpoint-bridging protein
publication title Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 37
structure length 124
sequence length 124
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 4wanA00
4JVYA 1ZTGA 1DTJA 1WE8A 1WVNA 4B8TA 4AM3A 1VIHA 1X4NA 1K1GA 4JVHA 2OPVA 4AIMA 2JEBI 2JE6I 2PQUA 2JEAI 1ZZIA 2P2RA 2CTKA 2CTLA 2JA9A 4OO1G 1ZZJA 4QMFB 2ANNA 3V69A 3AEVB 5JEAG 2CTMA 2FMRA 2AXYA 4WANA 1ZZKA 5C0XG 2JZXA 2E3UA 2CPQA 4LIJA 2DGRA 2HH3A 1EC6A 2QNDA 4BA1I 4BA2I 2OPUA 3L7ZC 1KHMA 3VKEA 1TUAA 2PY9A 3U1KA 4NBQA 4WALA 5K36G 1DT4A 4IFDG 2ANRA 2JVZA 2NN6G 2MJHA 1X4MA 2CTEA 1VIGA 2CTFA 2YQRA 2Z0SA 1J4WA 2HH2A 1J5KA 2BL5A 2CTJA 2BA0A
chains in the Genus database with same CATH superfamily
1MSZA 4DR3H 2O4CA 4YY3H 2UUBH 1ZTGA 2HHHH 1WE8A 4OD6A 1XMOH 4DR7H 1XMQH 1VIHA 4FJUA 4H8AA 2UXCH 1K1GA 2OPVA 1N32H 2JE6I 1ZZIA 2CTLA 5A2QW 1VBIA 3GR5A 1Z2IA 2LRRA 5JEAG 4DV0H 1J5EH 2UUAH 2FMRA 2LTMA 4FJSA 4WANA 2JZXA 2FFMA 2DGRA 4BA1I 1F0XA 3KDKA 1SEIA 1WTJA 4DUYH 1XRHA 1FKAH 4LF7H 1PQXA 2G8YA 4JI1H 1S20A 2NN6G 5FLXW 1ODHA 1X4MA 1J4WA 1VIGA 2YQRA 4E9JA 1HR0H 4LFCH 1J5KA 5LMNH 3UOEA 4LF8H 4NXMH 4JVYA 4DV2H 2ZQEA 1FJGH 2VKCA 4DV4H 3RF2A 4B3SH 4JI8H 2X06A 3OETA 4JI3H 4B3TH 4DR5H 2CPMA 2M6QA 2CTKA 2K1HA 2JA9A 1IBLH 4JI6H 1ZZJA 3OSSD 4LF4H 5IWAH 5LMUH 4DR2H 4OX9H 3QD7X 1ZZKA 3FAUA 2HH3A 2QNDA 4DV3H 2OPUA 3L7ZC 1XNQH 3VKEA 1TUAA 1IBMH 1N36H 3U1KA 2PY9A 2Y3MA 1S03G 4X62H 4LFBH 4WALA 4NZTM 5K36G 1DT4A 1XNRH 2MJHA 5BR8H 2Z0SA 3GKUA 2UU9H 1NXUA 4DV5H 3AEVB 1V9NA 1X0AA 2LF0A 3I0PA 2PT7G 3J7AK 1DTJA 3J80W 1WVNA 4B8TA 2M8WA 1WHRA 2CWFA 2D9IA 4JVHA 2JEBI 3EZJA 3T1YH 2VQFH 4OO1G 4QMFB 1V8CA 1X9ZA 4X65H 4X66H 3JAMW 2UUCH 4JI7H 1HNWH 4B3RH 2LTLA 3GABA 1N33H 4NZRM 5C0XG 4LF5H 1HNZH 2E3UA 4LIJA 3J81W 4K0KH 4LF6H 1EC6A 1AN7A 1UG8A 2ZM6H 1KHMA 4JI2H 4AQYH 4B8CD 4EC5A 3OTOH 4IFDG 1N34H 2CWHA 2JEAI 4JI5H 2A1SA 3SB1A 2HH2A 4JI0H 4PDBA 2BL5A 2CTJA 2BA0A 2FPHX 4OCHA 3T1HH 2UXDH 2E5LH 4LF9H 4LFAH 4DV6H 1I6UA 5IT9W 4B3MH 4X64H 4AM3A 1X4NA 4DR1H 4AIMA 4DV1H 2VQEH 4NXNH 4DR6H 2PQUA 4G08A 4YHHH 4JV5H 3NCVA 2P2RA 2UXBH 4GKKH 4JYAH 2ANNA 3V69A 1IBKH 2CTMA 2AXYA 5DT9A 4DV7H 2CPQA 4BA2I 1HNXH 4KHPH 4DUZH 4NBQA 4DR4H 2F4VH 2ANRA 2JVZA 1I94H 2CTEA 2CTFA 5LL6b 3KDGA 4GKJH 4JI4H
chains in the Genus database with same CATH topology
4JVYA 1ZTGA 1DTJA 1WE8A 1WVNA 4B8TA 4AM3A 1VIHA 1X4NA 1K1GA 4JVHA 2OPVA 4AIMA 2JEBI 2JE6I 2PQUA 2JEAI 1ZZIA 2P2RA 2CTKA 2CTLA 2JA9A 4OO1G 1ZZJA 4QMFB 2ANNA 3V69A 3AEVB 5JEAG 2CTMA 2FMRA 2AXYA 4WANA 1ZZKA 5C0XG 2JZXA 2E3UA 2CPQA 4LIJA 2DGRA 2HH3A 1EC6A 2QNDA 4BA1I 4BA2I 2OPUA 3L7ZC 1KHMA 3VKEA 1TUAA 2PY9A 3U1KA 4NBQA 4WALA 5K36G 1DT4A 4IFDG 2ANRA 2JVZA 2NN6G 2MJHA 1X4MA 2CTEA 1VIGA 2CTFA 2YQRA 2Z0SA 1J4WA 2HH2A 1J5KA 2BL5A 2CTJA 2BA0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JVY A;  1ZTG A;  1DTJ A;  1WE8 A;  1WVN A;  4B8T A;  4AM3 A;  1VIH A;  1X4N A;  1K1G A;  4JVH A;  2OPV A;  4AIM A;  2JEB I;  2JE6 I;  2PQU A;  2JEA I;  1ZZI A;  2P2R A;  2CTK A;  2CTL A;  2JA9 A;  4OO1 G;  1ZZJ A;  4QMF B;  2ANN A;  3V69 A;  3AEV B;  5JEA G;  2CTM A;  2FMR A;  2AXY A;  4WAN A;  1ZZK A;  5C0X G;  2JZX A;  2E3U A;  2CPQ A;  4LIJ A;  2DGR A;  2HH3 A;  1EC6 A;  2QND A;  4BA1 I;  4BA2 I;  2OPU A;  3L7Z C;  1KHM A;  3VKE A;  1TUA A;  2PY9 A;  3U1K A;  4NBQ A;  4WAL A;  5K36 G;  1DT4 A;  4IFD G;  2ANR A;  2JVZ A;  2NN6 G;  2MJH A;  1X4M A;  2CTE A;  1VIG A;  2CTF A;  2YQR A;  2Z0S A;  1J4W A;  2HH2 A;  1J5K A;  2BL5 A;  2CTJ A;  2BA0 A; 
#chains in the Genus database with same CATH topology
 1MSZ A;  4DR3 H;  2O4C A;  4YY3 H;  2UUB H;  1ZTG A;  2HHH H;  1WE8 A;  4OD6 A;  1XMO H;  4DR7 H;  1XMQ H;  1VIH A;  4FJU A;  4H8A A;  2UXC H;  1K1G A;  2OPV A;  1N32 H;  2JE6 I;  1ZZI A;  2CTL A;  5A2Q W;  1VBI A;  3GR5 A;  1Z2I A;  2LRR A;  5JEA G;  4DV0 H;  1J5E H;  2UUA H;  2FMR A;  2LTM A;  4FJS A;  4WAN A;  2JZX A;  2FFM A;  2DGR A;  4BA1 I;  1F0X A;  3KDK A;  1SEI A;  1WTJ A;  4DUY H;  1XRH A;  1FKA H;  4LF7 H;  1PQX A;  2G8Y A;  4JI1 H;  1S20 A;  2NN6 G;  5FLX W;  1ODH A;  1X4M A;  1J4W A;  1VIG A;  2YQR A;  4E9J A;  1HR0 H;  4LFC H;  1J5K A;  5LMN H;  3UOE A;  4LF8 H;  4NXM H;  4JVY A;  4DV2 H;  2ZQE A;  1FJG H;  2VKC A;  4DV4 H;  3RF2 A;  4B3S H;  4JI8 H;  2X06 A;  3OET A;  4JI3 H;  4B3T H;  4DR5 H;  2CPM A;  2M6Q A;  2CTK A;  2K1H A;  2JA9 A;  1IBL H;  4JI6 H;  1ZZJ A;  3OSS D;  4LF4 H;  5IWA H;  5LMU H;  4DR2 H;  4OX9 H;  3QD7 X;  1ZZK A;  3FAU A;  2HH3 A;  2QND A;  4DV3 H;  2OPU A;  3L7Z C;  1XNQ H;  3VKE A;  1TUA A;  1IBM H;  1N36 H;  3U1K A;  2PY9 A;  2Y3M A;  1S03 G;  4X62 H;  4LFB H;  4WAL A;  4NZT M;  5K36 G;  1DT4 A;  1XNR H;  2MJH A;  5BR8 H;  2Z0S A;  3GKU A;  2UU9 H;  1NXU A;  4DV5 H;  3AEV B;  1V9N A;  1X0A A;  2LF0 A;  3I0P A;  2PT7 G;  3J7A K;  1DTJ A;  3J80 W;  1WVN A;  4B8T A;  2M8W A;  1WHR A;  2CWF A;  2D9I A;  4JVH A;  2JEB I;  3EZJ A;  3T1Y H;  2VQF H;  4OO1 G;  4QMF B;  1V8C A;  1X9Z A;  4X65 H;  4X66 H;  3JAM W;  2UUC H;  4JI7 H;  1HNW H;  4B3R H;  2LTL A;  3GAB A;  1N33 H;  4NZR M;  5C0X G;  4LF5 H;  1HNZ H;  2E3U A;  4LIJ A;  3J81 W;  4K0K H;  4LF6 H;  1EC6 A;  1AN7 A;  1UG8 A;  2ZM6 H;  1KHM A;  4JI2 H;  4AQY H;  4B8C D;  4EC5 A;  3OTO H;  4IFD G;  1N34 H;  2CWH A;  2JEA I;  4JI5 H;  2A1S A;  3SB1 A;  2HH2 A;  4JI0 H;  4PDB A;  2BL5 A;  2CTJ A;  2BA0 A;  2FPH X;  4OCH A;  3T1H H;  2UXD H;  2E5L H;  4LF9 H;  4LFA H;  4DV6 H;  1I6U A;  5IT9 W;  4B3M H;  4X64 H;  4AM3 A;  1X4N A;  4DR1 H;  4AIM A;  4DV1 H;  2VQE H;  4NXN H;  4DR6 H;  2PQU A;  4G08 A;  4YHH H;  4JV5 H;  3NCV A;  2P2R A;  2UXB H;  4GKK H;  4JYA H;  2ANN A;  3V69 A;  1IBK H;  2CTM A;  2AXY A;  5DT9 A;  4DV7 H;  2CPQ A;  4BA2 I;  1HNX H;  4KHP H;  4DUZ H;  4NBQ A;  4DR4 H;  2F4V H;  2ANR A;  2JVZ A;  1I94 H;  2CTE A;  2CTF A;  5LL6 b;  3KDG A;  4GKJ H;  4JI4 H; 
#chains in the Genus database with same CATH homology
 4JVY A;  1ZTG A;  1DTJ A;  1WE8 A;  1WVN A;  4B8T A;  4AM3 A;  1VIH A;  1X4N A;  1K1G A;  4JVH A;  2OPV A;  4AIM A;  2JEB I;  2JE6 I;  2PQU A;  2JEA I;  1ZZI A;  2P2R A;  2CTK A;  2CTL A;  2JA9 A;  4OO1 G;  1ZZJ A;  4QMF B;  2ANN A;  3V69 A;  3AEV B;  5JEA G;  2CTM A;  2FMR A;  2AXY A;  4WAN A;  1ZZK A;  5C0X G;  2JZX A;  2E3U A;  2CPQ A;  4LIJ A;  2DGR A;  2HH3 A;  1EC6 A;  2QND A;  4BA1 I;  4BA2 I;  2OPU A;  3L7Z C;  1KHM A;  3VKE A;  1TUA A;  2PY9 A;  3U1K A;  4NBQ A;  4WAL A;  5K36 G;  1DT4 A;  4IFD G;  2ANR A;  2JVZ A;  2NN6 G;  2MJH A;  1X4M A;  2CTE A;  1VIG A;  2CTF A;  2YQR A;  2Z0S A;  1J4W A;  2HH2 A;  1J5K A;  2BL5 A;  2CTJ A;  2BA0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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