4WCEJ

The crystal structure of the large ribosomal subunit of staphylococcus aureus
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
141
structure length
141
Chain Sequence
MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKRGGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRLASHKLPVKTKFVKREELGGET
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 23S rRNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
total genus 21
structure length 141
sequence length 141
ec nomenclature
pdb deposition date 2014-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4wceJ01
1Q86J 2QA4H 5GAEN 1W2BH 1YJWH 1VQ6H 1YJNH 3CMEH 1KQSH 3CCVH 1YI2H 2OTLH 5GAHN 5GADN 1VQ5H 2QEXH 3DLLJ 1M1KJ 3G71H 3G6EH 3CCJH 1YIJH 4IO9J 3CF5J 3OW2H 3CCQH 3I56H 1K8AJ 1YITH 4U67J 1VQPH 5DM7J 3CMAH 4WF9J 4UY8M 5H1SO 5MLCO 1VQNH 3CCLH 1VQ9H 2ZJRJ 2ZJQJ 2ZJPJ 1YHQH 3CCEH 1KD1J 1K9MJ 5GAGN 1QVFH 4WFAJ 1M90J 1N8RJ 1Q82J 1VQKH 3CCUH 3CC2H 5DM6J 2OTJH 4WCEJ 4IOCJ 1VQ7H 1S72H 4WFNJ 5AN9F 3CCRH 3CD6H 3CCSH 3CXCH 1JJ2H 1NJIJ 5JVGJ 1QVGH 1KC8J 3CCMH 1VQLH 5JVHJ 1VQMH 3CC7H 5HL7J 3CPWH 3PIOJ 1Y69K 4WFBJ 1VQ8H 1VQOH 1WKIA 1Q7YJ 1K73J 1Q81J 2PA2A 3J7ZM 3G4SH 1YJ9H 1VQ4H 4IOAJ 3I55H 3CC4H 3PIPJ
chains in the Genus database with same CATH superfamily
1Q86J 2QA4H 5GAEN 2E3TA 1W2BH 2WP4A 1N5WB 1OTPA 1V97A 4KWVA 5HUOA 1YJWH 1VQ6H 1SB3A 1YJNH 4XR5A 3GNNA 1FO4A 1DGJA 5HULA 3CMEH 1KQSH 3RPFA 4ZOHA 3CCVH 4EAFA 1YI2H 2Q5WE 1N62B 2OTLH 5GAHN 3AM9A 2WK6A 5GADN 1VQ5H 2QEXH 3DLLJ 4US8A 1M1KJ 1YTEA 1NVIE 2B7PA 1VDVA 4YEKA 1QPQA 1O4UA 1N63B 2TPTA 3G71H 4C80A 3G6EH 3CCJH 1BRWA 2WK5A 1YIJH 1NVJA 3BIIE 4IO9J 3CF5J 3OW2H 3CCQH 3I56H 5AYYA 1K8AJ 1YITH 4U67J 1VQPH 5DM7J 1JROB 3CMAH 4WF9J 1FMAE 3H5QA 3NVWC 3CC4H 3L4PA 5EP8A 3C2VA 5AYZA 4KWWA 3C2OA 4UY8M 5H1SO 5MLCO 1VQNH 4YYYA 1JRPB 3CCLH 1VQ9H 4C7ZA 2ZJRJ 1N60B 4US9A 2J0FA 4EADA 2ZJQJ 2ZJPJ 4AP8A 1YHQH 3CCEH 1KD1J 5GAGN 1K9MJ 1QVFH 3C2RA 4WFAJ 1M90J 1N8RJ 1Q82J 1UOUA 2QIEA 4USAA 1X1OA 1VQKH 1SIJA 1RM6A 3CC2H 3PAJA 5DM6J 3CCUH 1AZYA 3EUB4 2OTJH 3AN1A 4WCEJ 1QAPA 4IOCJ 1VQ7H 1S72H 4GA5A 4WFNJ 3NVVC 3NVYC 3B9JC 4GA6A 2OMDA 2W3SB 5AN9F 3WO0A 3ETRC 3CCRH 3CCSH 3CD6H 3CXCH 1JJ2H 2W55B 3VMMA 5JVGJ 1QVGH 1KC8J 2B7QA 3SR6C 1NJIJ 5EY3A 1N61B 3CCMH 1YTKA 2W54B 5JVHJ 1VQMH 1VQLH 4LHMA 3CC7H 4C7YA 5HL7J 4I9AA 3L0GA 2JBMA 1WYGA 4X46A 3CPWH 3PIOJ 1N5XA 3FAHA 3WO1A 1VLBA 1QPOA 1Y69K 1FFUB 4WFBJ 1YTDA 1ZXIB 2I1OA 3AMZA 3C2EA 2W3RB 1VQ8H 2DSJA 3WNZA 1VQOH 1WKIA 5HUPA 1FM0E 5MPOC 1Q7YJ 5AYXA 1K73J 2I14A 1Q81J 2PA2A 3J7ZM 1QPNA 3NS1C 1FFVB 1FIQC 3NVZC 3G4SH 1YJ9H 1QPRA 1VQ4H 4IOAJ 4GA4A 3FC4A 3I55H 2B7NA 3TQVA 3NRZC 3C2FA 3PIPJ
chains in the Genus database with same CATH topology
1Q86J 2QA4H 5GAEN 1W2BH 1YJWH 1VQ6H 1YJNH 3CMEH 1KQSH 3CCVH 1YI2H 2OTLH 5GAHN 5GADN 1VQ5H 2QEXH 3DLLJ 1M1KJ 3G71H 3G6EH 3CCJH 1YIJH 4IO9J 3CF5J 3OW2H 3CCQH 3I56H 1K8AJ 1YITH 4U67J 1VQPH 5DM7J 3CMAH 4WF9J 4UY8M 5H1SO 5MLCO 1VQNH 3CCLH 1VQ9H 2ZJRJ 2ZJQJ 2ZJPJ 1YHQH 3CCEH 1KD1J 1K9MJ 5GAGN 1QVFH 4WFAJ 1M90J 1N8RJ 1Q82J 1VQKH 3CCUH 3CC2H 5DM6J 2OTJH 4WCEJ 4IOCJ 1VQ7H 1S72H 4WFNJ 5AN9F 3CCRH 3CD6H 3CCSH 3CXCH 1JJ2H 1NJIJ 5JVGJ 1QVGH 1KC8J 3CCMH 1VQLH 5JVHJ 1VQMH 3CC7H 5HL7J 3CPWH 3PIOJ 1Y69K 4WFBJ 1VQ8H 1VQOH 1WKIA 1Q7YJ 1K73J 1Q81J 2PA2A 3J7ZM 3G4SH 1YJ9H 1VQ4H 4IOAJ 3I55H 3CC4H 3PIPJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q86 J;  2QA4 H;  5GAE N;  1W2B H;  1YJW H;  1VQ6 H;  1YJN H;  3CME H;  1KQS H;  3CCV H;  1YI2 H;  2OTL H;  5GAH N;  5GAD N;  1VQ5 H;  2QEX H;  3DLL J;  1M1K J;  3G71 H;  3G6E H;  3CCJ H;  1YIJ H;  4IO9 J;  3CF5 J;  3OW2 H;  3CCQ H;  3I56 H;  1K8A J;  1YIT H;  4U67 J;  1VQP H;  5DM7 J;  3CMA H;  4WF9 J;  4UY8 M;  5H1S O;  5MLC O;  1VQN H;  3CCL H;  1VQ9 H;  2ZJR J;  2ZJQ J;  2ZJP J;  1YHQ H;  3CCE H;  1KD1 J;  1K9M J;  5GAG N;  1QVF H;  4WFA J;  1M90 J;  1N8R J;  1Q82 J;  1VQK H;  3CCU H;  3CC2 H;  5DM6 J;  2OTJ H;  4WCE J;  4IOC J;  1VQ7 H;  1S72 H;  4WFN J;  5AN9 F;  3CCR H;  3CD6 H;  3CCS H;  3CXC H;  1JJ2 H;  1NJI J;  5JVG J;  1QVG H;  1KC8 J;  3CCM H;  1VQL H;  5JVH J;  1VQM H;  3CC7 H;  5HL7 J;  3CPW H;  3PIO J;  1Y69 K;  4WFB J;  1VQ8 H;  1VQO H;  1WKI A;  1Q7Y J;  1K73 J;  1Q81 J;  2PA2 A;  3J7Z M;  3G4S H;  1YJ9 H;  1VQ4 H;  4IOA J;  3I55 H;  3CC4 H;  3PIP J; 
#chains in the Genus database with same CATH topology
 1Q86 J;  2QA4 H;  5GAE N;  2E3T A;  1W2B H;  2WP4 A;  1N5W B;  1OTP A;  1V97 A;  4KWV A;  5HUO A;  1YJW H;  1VQ6 H;  1SB3 A;  1YJN H;  4XR5 A;  3GNN A;  1FO4 A;  1DGJ A;  5HUL A;  3CME H;  1KQS H;  3RPF A;  4ZOH A;  3CCV H;  4EAF A;  1YI2 H;  2Q5W E;  1N62 B;  2OTL H;  5GAH N;  3AM9 A;  2WK6 A;  5GAD N;  1VQ5 H;  2QEX H;  3DLL J;  4US8 A;  1M1K J;  1YTE A;  1NVI E;  2B7P A;  1VDV A;  4YEK A;  1QPQ A;  1O4U A;  1N63 B;  2TPT A;  3G71 H;  4C80 A;  3G6E H;  3CCJ H;  1BRW A;  2WK5 A;  1YIJ H;  1NVJ A;  3BII E;  4IO9 J;  3CF5 J;  3OW2 H;  3CCQ H;  3I56 H;  5AYY A;  1K8A J;  1YIT H;  4U67 J;  1VQP H;  5DM7 J;  1JRO B;  3CMA H;  4WF9 J;  1FMA E;  3H5Q A;  3NVW C;  3CC4 H;  3L4P A;  5EP8 A;  3C2V A;  5AYZ A;  4KWW A;  3C2O A;  4UY8 M;  5H1S O;  5MLC O;  1VQN H;  4YYY A;  1JRP B;  3CCL H;  1VQ9 H;  4C7Z A;  2ZJR J;  1N60 B;  4US9 A;  2J0F A;  4EAD A;  2ZJQ J;  2ZJP J;  4AP8 A;  1YHQ H;  3CCE H;  1KD1 J;  5GAG N;  1K9M J;  1QVF H;  3C2R A;  4WFA J;  1M90 J;  1N8R J;  1Q82 J;  1UOU A;  2QIE A;  4USA A;  1X1O A;  1VQK H;  1SIJ A;  1RM6 A;  3CC2 H;  3PAJ A;  5DM6 J;  3CCU H;  1AZY A;  3EUB 4;  2OTJ H;  3AN1 A;  4WCE J;  1QAP A;  4IOC J;  1VQ7 H;  1S72 H;  4GA5 A;  4WFN J;  3NVV C;  3NVY C;  3B9J C;  4GA6 A;  2OMD A;  2W3S B;  5AN9 F;  3WO0 A;  3ETR C;  3CCR H;  3CCS H;  3CD6 H;  3CXC H;  1JJ2 H;  2W55 B;  3VMM A;  5JVG J;  1QVG H;  1KC8 J;  2B7Q A;  3SR6 C;  1NJI J;  5EY3 A;  1N61 B;  3CCM H;  1YTK A;  2W54 B;  5JVH J;  1VQM H;  1VQL H;  4LHM A;  3CC7 H;  4C7Y A;  5HL7 J;  4I9A A;  3L0G A;  2JBM A;  1WYG A;  4X46 A;  3CPW H;  3PIO J;  1N5X A;  3FAH A;  3WO1 A;  1VLB A;  1QPO A;  1Y69 K;  1FFU B;  4WFB J;  1YTD A;  1ZXI B;  2I1O A;  3AMZ A;  3C2E A;  2W3R B;  1VQ8 H;  2DSJ A;  3WNZ A;  1VQO H;  1WKI A;  5HUP A;  1FM0 E;  5MPO C;  1Q7Y J;  5AYX A;  1K73 J;  2I14 A;  1Q81 J;  2PA2 A;  3J7Z M;  1QPN A;  3NS1 C;  1FFV B;  1FIQ C;  3NVZ C;  3G4S H;  1YJ9 H;  1QPR A;  1VQ4 H;  4IOA J;  4GA4 A;  3FC4 A;  3I55 H;  2B7N A;  3TQV A;  3NRZ C;  3C2F A;  3PIP J; 
#chains in the Genus database with same CATH homology
 1Q86 J;  2QA4 H;  5GAE N;  1W2B H;  1YJW H;  1VQ6 H;  1YJN H;  3CME H;  1KQS H;  3CCV H;  1YI2 H;  2OTL H;  5GAH N;  5GAD N;  1VQ5 H;  2QEX H;  3DLL J;  1M1K J;  3G71 H;  3G6E H;  3CCJ H;  1YIJ H;  4IO9 J;  3CF5 J;  3OW2 H;  3CCQ H;  3I56 H;  1K8A J;  1YIT H;  4U67 J;  1VQP H;  5DM7 J;  3CMA H;  4WF9 J;  4UY8 M;  5H1S O;  5MLC O;  1VQN H;  3CCL H;  1VQ9 H;  2ZJR J;  2ZJQ J;  2ZJP J;  1YHQ H;  3CCE H;  1KD1 J;  1K9M J;  5GAG N;  1QVF H;  4WFA J;  1M90 J;  1N8R J;  1Q82 J;  1VQK H;  3CCU H;  3CC2 H;  5DM6 J;  2OTJ H;  4WCE J;  4IOC J;  1VQ7 H;  1S72 H;  4WFN J;  5AN9 F;  3CCR H;  3CD6 H;  3CCS H;  3CXC H;  1JJ2 H;  1NJI J;  5JVG J;  1QVG H;  1KC8 J;  3CCM H;  1VQL H;  5JVH J;  1VQM H;  3CC7 H;  5HL7 J;  3CPW H;  3PIO J;  1Y69 K;  4WFB J;  1VQ8 H;  1VQO H;  1WKI A;  1Q7Y J;  1K73 J;  1Q81 J;  2PA2 A;  3J7Z M;  3G4S H;  1YJ9 H;  1VQ4 H;  4IOA J;  3I55 H;  3CC4 H;  3PIP J; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...