4WCEP

The crystal structure of the large ribosomal subunit of staphylococcus aureus
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
112
structure length
112
Chain Sequence
MEAKAVARTIRIAPRKVRLVLDLIRGKNAAEAIAILKLTNKASSPVIEKVLMSALANAEHNYDMNTDELVVKEAYANEGPTLKRFRPRAQGRASAINKRTSHITIVVSDGKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S rRNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
total genus 24
structure length 112
sequence length 112
ec nomenclature
pdb deposition date 2014-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 4wceP00
5JVGP 3CC2R 4WCEP 5MLCU 3OW2Q 3CMAR 4UY8S 3DLLP 4IO9P 3CMER 1VQMR 1VQLR 2ZJQP 3G4SR 1W2BQ 1NJIS 3CCER 1VQ4R 2QEXR 1K8AS 3CD6R 3CC7R 4WFBP 3CF5P 4IOCP 1Q7YS 3CCJR 3PIOP 5HL7P 1KQSQ 1VQOR 3G6ER 1VQPR 1YJ9R 1M90S 3CCMR 5DM6P 5GAET 3CCUR 3CCLR 4WFAP 2QA4R 1QVGQ 3CXCQ 5GAHT 1KD1S 1VQNR 1VQ8R 2ZJRP 3G71R 3CCRR 1Q82S 4WF9P 1N8RS 5GADT 1VQKR 1YITR 1YJNR 1M1KS 1I4JA 2ZJPP 3CCSR 1VQ5R 4WFNP 5GAGT 5H1SU 5JVHP 5DM7P 1K73S 1Q81S 1VQ9R 1VQ6R 1YIJR 3CCVR 1QVFQ 1S72R 3J7ZS 4IOAP 3PIPP 4V19W 1K9MS 2OTJR 1BXEA 3J7YT 2OTLR 1YI2R 1Q86S 3CCQR 4U67P 1KC8S 1VQ7R 1JJ2Q 3CC4R 3I56R 1YJWR 3I55R 3CPWQ 1YHQR
chains in the Genus database with same CATH superfamily
5JVGP 3CC2R 3HYKA 4WCEP 5MLCU 3OW2Q 3CMAR 4UY8S 3GWMA 3QMNA 4MRTA 3DLLP 1NBWA 4IO9P 3CMER 1VQMR 1VQLR 2ZJQP 1F80A 3G4SR 1QR0A 1W2BQ 1NJIS 3NE3B 1F7LA 3HQJA 2CG5A 3H7QA 3CCER 1VQ4R 2QEXR 1K8AS 3CD6R 4HC6A 3CC7R 4WFBP 3CF5P 2D0PA 4IOCP 1Q7YS 3NE1A 3CCJR 3PIOP 5HL7P 1KQSQ 1VQOR 4JM7A 3G6ER 1VQPR 1YJ9R 1M90S 3CCMR 5DM6P 5GAET 3CCUR 2JCAA 1FTEA 2WDYA 2QG8A 3CCLR 4WFAP 2WDOA 2QA4R 1QVGQ 3CXCQ 2BDDA 5GAHT 5CXDA 1KD1S 1VQNR 1VQ8R 2ZJRP 3G71R 3NFDA 3CCRR 1Q82S 4WF9P 1N8RS 5GADT 1VQKR 1FTFA 1YITR 1YJNR 2WASA 4DXEA 2WDSA 1M1KS 2C43A 1I4JA 2JBZA 2ZJPP 3CCSR 1VQ5R 4WFNP 2WASB 1FTHA 2BYDA 3NE9A 5H1SU 5DM7P 5GAGT 5JVHP 1Q81S 1K73S 1VQ9R 1VQ6R 1YIJR 3CCVR 1QVFQ 1S72R 3J7ZS 4IOAP 3PIPP 5CMOA 4V19W 1K9MS 2OTJR 1BXEA 3J7YT 2OTLR 2D0OA 1YI2R 1Q86S 3CCQR 4U67P 1F7TA 1KC8S 1VQ7R 1JJ2Q 3CC4R 3I56R 1YJWR 3I55R 3CPWQ 1YHQR 2WATA
chains in the Genus database with same CATH topology
5JVGP 3CC2R 4WCEP 5MLCU 3OW2Q 3CMAR 4UY8S 3DLLP 4IO9P 3CMER 1VQMR 1VQLR 2ZJQP 3G4SR 1W2BQ 1NJIS 3CCER 1VQ4R 2QEXR 1K8AS 3CD6R 3CC7R 4WFBP 3CF5P 4IOCP 1Q7YS 3CCJR 3PIOP 5HL7P 1KQSQ 1VQOR 3G6ER 1VQPR 1YJ9R 1M90S 3CCMR 5DM6P 5GAET 3CCUR 3CCLR 4WFAP 2QA4R 1QVGQ 3CXCQ 5GAHT 1KD1S 1VQNR 1VQ8R 2ZJRP 3G71R 3CCRR 1Q82S 4WF9P 1N8RS 5GADT 1VQKR 1YITR 1YJNR 1M1KS 1I4JA 2ZJPP 3CCSR 1VQ5R 4WFNP 5GAGT 5H1SU 5JVHP 5DM7P 1K73S 1Q81S 1VQ9R 1VQ6R 1YIJR 3CCVR 1QVFQ 1S72R 3J7ZS 4IOAP 3PIPP 4V19W 1K9MS 2OTJR 1BXEA 3J7YT 2OTLR 1YI2R 1Q86S 3CCQR 4U67P 1KC8S 1VQ7R 1JJ2Q 3CC4R 3I56R 1YJWR 3I55R 3CPWQ 1YHQR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JVG P;  3CC2 R;  4WCE P;  5MLC U;  3OW2 Q;  3CMA R;  4UY8 S;  3DLL P;  4IO9 P;  3CME R;  1VQM R;  1VQL R;  2ZJQ P;  3G4S R;  1W2B Q;  1NJI S;  3CCE R;  1VQ4 R;  2QEX R;  1K8A S;  3CD6 R;  3CC7 R;  4WFB P;  3CF5 P;  4IOC P;  1Q7Y S;  3CCJ R;  3PIO P;  5HL7 P;  1KQS Q;  1VQO R;  3G6E R;  1VQP R;  1YJ9 R;  1M90 S;  3CCM R;  5DM6 P;  5GAE T;  3CCU R;  3CCL R;  4WFA P;  2QA4 R;  1QVG Q;  3CXC Q;  5GAH T;  1KD1 S;  1VQN R;  1VQ8 R;  2ZJR P;  3G71 R;  3CCR R;  1Q82 S;  4WF9 P;  1N8R S;  5GAD T;  1VQK R;  1YIT R;  1YJN R;  1M1K S;  1I4J A;  2ZJP P;  3CCS R;  1VQ5 R;  4WFN P;  5GAG T;  5H1S U;  5JVH P;  5DM7 P;  1K73 S;  1Q81 S;  1VQ9 R;  1VQ6 R;  1YIJ R;  3CCV R;  1QVF Q;  1S72 R;  3J7Z S;  4IOA P;  3PIP P;  4V19 W;  1K9M S;  2OTJ R;  1BXE A;  3J7Y T;  2OTL R;  1YI2 R;  1Q86 S;  3CCQ R;  4U67 P;  1KC8 S;  1VQ7 R;  1JJ2 Q;  3CC4 R;  3I56 R;  1YJW R;  3I55 R;  3CPW Q;  1YHQ R; 
#chains in the Genus database with same CATH topology
 5JVG P;  3CC2 R;  3HYK A;  4WCE P;  5MLC U;  3OW2 Q;  3CMA R;  4UY8 S;  3GWM A;  3QMN A;  4MRT A;  3DLL P;  1NBW A;  4IO9 P;  3CME R;  1VQM R;  1VQL R;  2ZJQ P;  1F80 A;  3G4S R;  1QR0 A;  1W2B Q;  1NJI S;  3NE3 B;  1F7L A;  3HQJ A;  2CG5 A;  3H7Q A;  3CCE R;  1VQ4 R;  2QEX R;  1K8A S;  3CD6 R;  4HC6 A;  3CC7 R;  4WFB P;  3CF5 P;  2D0P A;  4IOC P;  1Q7Y S;  3NE1 A;  3CCJ R;  3PIO P;  5HL7 P;  1KQS Q;  1VQO R;  4JM7 A;  3G6E R;  1VQP R;  1YJ9 R;  1M90 S;  3CCM R;  5DM6 P;  5GAE T;  3CCU R;  2JCA A;  1FTE A;  2WDY A;  2QG8 A;  3CCL R;  4WFA P;  2WDO A;  2QA4 R;  1QVG Q;  3CXC Q;  2BDD A;  5GAH T;  5CXD A;  1KD1 S;  1VQN R;  1VQ8 R;  2ZJR P;  3G71 R;  3NFD A;  3CCR R;  1Q82 S;  4WF9 P;  1N8R S;  5GAD T;  1VQK R;  1FTF A;  1YIT R;  1YJN R;  2WAS A;  4DXE A;  2WDS A;  1M1K S;  2C43 A;  1I4J A;  2JBZ A;  2ZJP P;  3CCS R;  1VQ5 R;  4WFN P;  2WAS B;  1FTH A;  2BYD A;  3NE9 A;  5H1S U;  5DM7 P;  5GAG T;  5JVH P;  1Q81 S;  1K73 S;  1VQ9 R;  1VQ6 R;  1YIJ R;  3CCV R;  1QVF Q;  1S72 R;  3J7Z S;  4IOA P;  3PIP P;  5CMO A;  4V19 W;  1K9M S;  2OTJ R;  1BXE A;  3J7Y T;  2OTL R;  2D0O A;  1YI2 R;  1Q86 S;  3CCQ R;  4U67 P;  1F7T A;  1KC8 S;  1VQ7 R;  1JJ2 Q;  3CC4 R;  3I56 R;  1YJW R;  3I55 R;  3CPW Q;  1YHQ R;  2WAT A; 
#chains in the Genus database with same CATH homology
 5JVG P;  3CC2 R;  4WCE P;  5MLC U;  3OW2 Q;  3CMA R;  4UY8 S;  3DLL P;  4IO9 P;  3CME R;  1VQM R;  1VQL R;  2ZJQ P;  3G4S R;  1W2B Q;  1NJI S;  3CCE R;  1VQ4 R;  2QEX R;  1K8A S;  3CD6 R;  3CC7 R;  4WFB P;  3CF5 P;  4IOC P;  1Q7Y S;  3CCJ R;  3PIO P;  5HL7 P;  1KQS Q;  1VQO R;  3G6E R;  1VQP R;  1YJ9 R;  1M90 S;  3CCM R;  5DM6 P;  5GAE T;  3CCU R;  3CCL R;  4WFA P;  2QA4 R;  1QVG Q;  3CXC Q;  5GAH T;  1KD1 S;  1VQN R;  1VQ8 R;  2ZJR P;  3G71 R;  3CCR R;  1Q82 S;  4WF9 P;  1N8R S;  5GAD T;  1VQK R;  1YIT R;  1YJN R;  1M1K S;  1I4J A;  2ZJP P;  3CCS R;  1VQ5 R;  4WFN P;  5GAG T;  5H1S U;  5JVH P;  5DM7 P;  1K73 S;  1Q81 S;  1VQ9 R;  1VQ6 R;  1YIJ R;  3CCV R;  1QVF Q;  1S72 R;  3J7Z S;  4IOA P;  3PIP P;  4V19 W;  1K9M S;  2OTJ R;  1BXE A;  3J7Y T;  2OTL R;  1YI2 R;  1Q86 S;  3CCQ R;  4U67 P;  1KC8 S;  1VQ7 R;  1JJ2 Q;  3CC4 R;  3I56 R;  1YJW R;  3I55 R;  3CPW Q;  1YHQ R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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