4WCES

The crystal structure of the large ribosomal subunit of staphylococcus aureus
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
167
structure length
167
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S rRNA
total genus 21
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wceS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wceS02
1NYLA 5DM7S 4WFAS 2ZJRS 4WFBS 1EUQA 1QTQA 5GAEW 5JVGS 3DLLS 5GADW 4IO9S 5GAHW 3CF5S 1GTSA 3J7ZV 4P2BA 2RE8A 1ZJWA 3AIIA 5IZNA 3PIPS 5BNZA 2HZ7A 1O0BA 1EUYA 1FEUA 4IOCS 5DM6S 4IOAS 4JYZA 1EXDA 1GTRA 1QRSA 2ZJQS 3PIOS 4WF9S 1DFUP 4U67S 4WFNS 4WCES 5HL7S 1QRUA 4JXZA 2RD2A 1QRTA 1O0CA 1D6KA 4JXXA 2ZJPS 1B75A 4H3SA 5GAGW 5JVHS 4UY88
chains in the Genus database with same CATH superfamily
2ZJRS 5IYCC 2VUMC 5IYDC 2A69A 2PPBA 2E2IC 1SMYA 1QTQA 4C3JC 1R9TC 2PICA 2O5IA 4OIRA 5GAHW 4C3HC 4BBRC 2B63C 3AIIA 4X6AC 2HZ7A 1Y1VC 1EUYA 5TMCA 1TWAC 3LYWA 4ZH4A 3S1MC 4A3KC 1UDXA 3GTMC 3W2WB 4A3EC 4A3IC 1GTRA 1QRSA 2ZJQS 4A3DC 4A3JC 2AE0X 4A93C 2RD2A 1ZYRA 3S1NC 4KN7A 4MEYA 3S17C 2A68A 3HOYC 4JXXA 4J3CA 5JVHS 4AYBD 1V6ZA 2PA8D 4A3FC 3HOUC 3GTQC 5IYBC 4MQ9A 4YFXA 3S14C 5TMFA 3DXJA 3H3VD 1EUQA 2PNWA 2E2HC 3RZOC 5GAEW 1Y1WC 1TWHC 5GADW 4IO9S 2EGVA 4G7HA 1VHKA 1GTSA 3J7ZV 2R7ZC 2RE8A 3RZDC 4E8BA 3CQZC 3HOVC 2WAQD 4Y52C 1I50C 1NXZA 3M4OC 2CW0A 4XLPA 4OIOA 5DM6S 2YU9C 3S15C 3KW2A 1IW7A 3S2DC 4WF9S 1DFUP 4U67S 2Y0SD 3GTGC 5HL7S 4XSZA 4C2MC 1YNNA 4GZYA 4JXZA 2NVTC 2R92C 4BY7C 1O0CA 2NVQC 4G7OA 4BBSC 1D6KA 4Q5SA 1HQMA 3K7AC 1B75A 2KPUA 3CZBA 4KMUA 3GTOC 1I3QC 4XLNA 4BXXC 4A3MC 2Z0YA 3X1LB 4NOIA 4XSXA 4G7ZA 4L69A 5IP9C 3S2HC 3I4NC 1TWCC 2PJJA 3PO2C 3GTPC 3S16C 4YFNA 5IP7C 4H4KA 3S1RC 3W2VB 3PIPS 5IZNA 1K83C 3FKIC 5BNZA 4KN4A 4LLGA 1O0BA 2NVXC 4JK1A 3I4MC 4A3LC 1TWGC 2A6HA 5C3EC 5C4XC 5C44C 1EXDA 4LK1A 1TWFC 5HQHA 2L5NA 2G6GA 4WCES 4LK0A 2NWAA 4V194 1QRUA 1BDFA 2O5JA 5D4DA 3WODA 1YNJA 1Z85A 4A3GC 2A6EA 2CX8A 3GTJC 3HOWC 4C3IC 3S1QC 2BE5A 4A3BC 5GAGW 2EGWA 3M3YC 1I6HC 4YFKA 2E2JC 3HKZD 2GAEA 1NYLA 5DM7S 4WFAS 3PO3C 4WFBS 4A3CC 2R93C 4OIQA 5JVGS 3DLLS 3EQLA 4Y7NC 3CF5S 2KQ1A 2JA5C 2JA8C 4P2BA 1ZJWA 4BY1C 4YG2A 1FEUA 1I6VA 4IOCS 4IOAS 2L3UA 4JYZA 5C4JC 2NVYC 3HOZC 2JA7C 3PIOS 3HOXC 4Q4ZA 4WFNS 4OINA 3H0GC 1VHYA 4QJVA 1QRTA 4QIWD 2WB1D 4LJZA 4OIPA 2JA6C 1SFOC 2ZJPS 5FLMC 4H3SA 1WCMC 3GTKC 2PI8A 2G5DA 2KXYA 4UY88 3GTLC 2PMZD 4MEXA
chains in the Genus database with same CATH topology
3X1LB 1NYLA 5DM7S 4WFAS 2ZJRS 4WFBS 1EUQA 1QTQA 5GAEW 5JVGS 3DLLS 5GADW 4IO9S 5GAHW 3CF5S 1GTSA 3J7ZV 4H4KA 4P2BA 3W2VB 3AIIA 5IZNA 3PIPS 2RE8A 5BNZA 1ZJWA 2HZ7A 1O0BA 1EUYA 1FEUA 1UDXA 5DM6S 4IOCS 3W2WB 4IOAS 4JYZA 1EXDA 1GTRA 1QRSA 2ZJQS 3PIOS 4WF9S 1DFUP 4U67S 4WFNS 4WCES 5HL7S 4V194 1QRUA 4JXZA 2RD2A 1QRTA 1O0CA 1D6KA 4JXXA 2ZJPS 1B75A 4H3SA 5GAGW 5JVHS 4UY88
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NYL A;  5DM7 S;  4WFA S;  2ZJR S;  4WFB S;  1EUQ A;  1QTQ A;  5GAE W;  5JVG S;  3DLL S;  5GAD W;  4IO9 S;  5GAH W;  3CF5 S;  1GTS A;  3J7Z V;  4P2B A;  2RE8 A;  1ZJW A;  3AII A;  5IZN A;  3PIP S;  5BNZ A;  2HZ7 A;  1O0B A;  1EUY A;  1FEU A;  4IOC S;  5DM6 S;  4IOA S;  4JYZ A;  1EXD A;  1GTR A;  1QRS A;  2ZJQ S;  3PIO S;  4WF9 S;  1DFU P;  4U67 S;  4WFN S;  4WCE S;  5HL7 S;  1QRU A;  4JXZ A;  2RD2 A;  1QRT A;  1O0C A;  1D6K A;  4JXX A;  2ZJP S;  1B75 A;  4H3S A;  5GAG W;  5JVH S;  4UY8 8; 
#chains in the Genus database with same CATH topology
 2ZJR S;  5IYC C;  2VUM C;  5IYD C;  2A69 A;  2PPB A;  2E2I C;  1SMY A;  1QTQ A;  4C3J C;  1R9T C;  2PIC A;  2O5I A;  4OIR A;  5GAH W;  4C3H C;  4BBR C;  2B63 C;  3AII A;  4X6A C;  2HZ7 A;  1Y1V C;  1EUY A;  5TMC A;  1TWA C;  3LYW A;  4ZH4 A;  3S1M C;  4A3K C;  1UDX A;  3GTM C;  3W2W B;  4A3E C;  4A3I C;  1GTR A;  1QRS A;  2ZJQ S;  4A3D C;  4A3J C;  2AE0 X;  4A93 C;  2RD2 A;  1ZYR A;  3S1N C;  4KN7 A;  4MEY A;  3S17 C;  2A68 A;  3HOY C;  4JXX A;  4J3C A;  5JVH S;  4AYB D;  1V6Z A;  2PA8 D;  4A3F C;  3HOU C;  3GTQ C;  5IYB C;  4MQ9 A;  4YFX A;  3S14 C;  5TMF A;  3DXJ A;  3H3V D;  1EUQ A;  2PNW A;  2E2H C;  3RZO C;  5GAE W;  1Y1W C;  1TWH C;  5GAD W;  4IO9 S;  2EGV A;  4G7H A;  1VHK A;  1GTS A;  3J7Z V;  2R7Z C;  2RE8 A;  3RZD C;  4E8B A;  3CQZ C;  3HOV C;  2WAQ D;  4Y52 C;  1I50 C;  1NXZ A;  3M4O C;  2CW0 A;  4XLP A;  4OIO A;  5DM6 S;  2YU9 C;  3S15 C;  3KW2 A;  1IW7 A;  3S2D C;  4WF9 S;  1DFU P;  4U67 S;  2Y0S D;  3GTG C;  5HL7 S;  4XSZ A;  4C2M C;  1YNN A;  4GZY A;  4JXZ A;  2NVT C;  2R92 C;  4BY7 C;  1O0C A;  2NVQ C;  4G7O A;  4BBS C;  1D6K A;  4Q5S A;  1HQM A;  3K7A C;  1B75 A;  2KPU A;  3CZB A;  4KMU A;  3GTO C;  1I3Q C;  4XLN A;  4BXX C;  4A3M C;  2Z0Y A;  3X1L B;  4NOI A;  4XSX A;  4G7Z A;  4L69 A;  5IP9 C;  3S2H C;  3I4N C;  1TWC C;  2PJJ A;  3PO2 C;  3GTP C;  3S16 C;  4YFN A;  5IP7 C;  4H4K A;  3S1R C;  3W2V B;  3PIP S;  5IZN A;  1K83 C;  3FKI C;  5BNZ A;  4KN4 A;  4LLG A;  1O0B A;  2NVX C;  4JK1 A;  3I4M C;  4A3L C;  1TWG C;  2A6H A;  5C3E C;  5C4X C;  5C44 C;  1EXD A;  4LK1 A;  1TWF C;  5HQH A;  2L5N A;  2G6G A;  4WCE S;  4LK0 A;  2NWA A;  4V19 4;  1QRU A;  1BDF A;  2O5J A;  5D4D A;  3WOD A;  1YNJ A;  1Z85 A;  4A3G C;  2A6E A;  2CX8 A;  3GTJ C;  3HOW C;  4C3I C;  3S1Q C;  2BE5 A;  4A3B C;  5GAG W;  2EGW A;  3M3Y C;  1I6H C;  4YFK A;  2E2J C;  3HKZ D;  2GAE A;  1NYL A;  5DM7 S;  4WFA S;  3PO3 C;  4WFB S;  4A3C C;  2R93 C;  4OIQ A;  5JVG S;  3DLL S;  3EQL A;  4Y7N C;  3CF5 S;  2KQ1 A;  2JA5 C;  2JA8 C;  4P2B A;  1ZJW A;  4BY1 C;  4YG2 A;  1FEU A;  1I6V A;  4IOC S;  4IOA S;  2L3U A;  4JYZ A;  5C4J C;  2NVY C;  3HOZ C;  2JA7 C;  3PIO S;  3HOX C;  4Q4Z A;  4WFN S;  4OIN A;  3H0G C;  1VHY A;  4QJV A;  1QRT A;  4QIW D;  2WB1 D;  4LJZ A;  4OIP A;  2JA6 C;  1SFO C;  2ZJP S;  5FLM C;  4H3S A;  1WCM C;  3GTK C;  2PI8 A;  2G5D A;  2KXY A;  4UY8 8;  3GTL C;  2PMZ D;  4MEX A; 
#chains in the Genus database with same CATH homology
 3X1L B;  1NYL A;  5DM7 S;  4WFA S;  2ZJR S;  4WFB S;  1EUQ A;  1QTQ A;  5GAE W;  5JVG S;  3DLL S;  5GAD W;  4IO9 S;  5GAH W;  3CF5 S;  1GTS A;  3J7Z V;  4H4K A;  4P2B A;  3W2V B;  3AII A;  5IZN A;  3PIP S;  2RE8 A;  5BNZ A;  1ZJW A;  2HZ7 A;  1O0B A;  1EUY A;  1FEU A;  1UDX A;  5DM6 S;  4IOC S;  3W2W B;  4IOA S;  4JYZ A;  1EXD A;  1GTR A;  1QRS A;  2ZJQ S;  3PIO S;  4WF9 S;  1DFU P;  4U67 S;  4WFN S;  4WCE S;  5HL7 S;  4V19 4;  1QRU A;  4JXZ A;  2RD2 A;  1QRT A;  1O0C A;  1D6K A;  4JXX A;  2ZJP S;  1B75 A;  4H3S A;  5GAG W;  5JVH S;  4UY8 8; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...