4WCES

The crystal structure of the large ribosomal subunit of staphylococcus aureus
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
167
structure length
167
Chain Sequence
b'SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S rRNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
total genus 21
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wceS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wceS02
1QRTA 4JXXA 3PIPS 3DLLS 3AIIA 1O0BA 4WF9S 4U67S 2ZJRS 5HL7S 4WFBS 2RE8A 1QTQA 5JVHS 2RD2A 5BNZA 5GAHW 4WCES 1QRSA 4P2BA 4UY88 1GTSA 5GAEW 1ZJWA 5IZNA 4IOAS 4JXZA 4WFNS 4WFAS 1DFUP 4JYZA 2ZJPS 2HZ7A 1D6KA 1EXDA 1QRUA 3CF5S 5DM7S 1EUYA 1B75A 5JVGS 4IO9S 1NYLA 4H3SA 5GADW 2ZJQS 1FEUA 5DM6S 3PIOS 1EUQA 3J7ZV 5GAGW 4IOCS 1GTRA 1O0CA
chains in the Genus database with same CATH superfamily
4BXXC 4LK1A 2BE5A 4XLPA 2PJJA 5C3EC 3K7AC 4WF9S 4C3HC 4ZH4A 2E2JC 2E2IC 2A6EA 4A3IC 2RE8A 3PO2C 1QTQA 1TWFC 1TWGC 4C3IC 4V194 2Y0SD 2RD2A 4WCES 1QRSA 4P2BA 3HOZC 4L69A 4H4KA 4A3DC 3S15C 3WODA 5C4XC 4IOAS 4X6AC 2L3UA 2NWAA 1EXDA 4BY7C 3S17C 1I3QC 1SMYA 2PPBA 2R93C 2G5DA 2KQ1A 3HOXC 3W2VB 1YNJA 1NXZA 4OIQA 3J7ZV 4IOCS 1GTRA 5HQHA 1QRTA 3GTKC 4KN4A 5TMCA 4KN7A 3DLLS 4JK1A 3AIIA 1O0BA 4MQ9A 4A3MC 3HOYC 3S14C 4Q4ZA 5HL7S 4WFBS 3RZOC 4KMUA 2Z0YA 1I6HC 4A3CC 4OIOA 3CZBA 5GAHW 1K83C 1R9TC 4XSXA 4A93C 3S2DC 2E2HC 4G7OA 3KW2A 1HQMA 2GAEA 5C44C 3GTMC 2O5IA 2G6GA 2A6HA 5C4JC 3M4OC 1TWCC 2ZJPS 1D6KA 4LK0A 3GTOC 1QRUA 2O5JA 4QJVA 4J3CA 1TWAC 2EGVA 5DM7S 4OINA 5JVGS 4E8BA 1NYLA 2EGWA 3EQLA 3I4MC 2CW0A 3M3YC 3S16C 2AE0X 2CX8A 5DM6S 4YFNA 2WB1D 1O0CA 4G7ZA 4A3LC 3X1LB 3HOWC 3GTPC 1TWHC 2A69A 4MEXA 2JA5C 5IP7C 2ZJRS 2KPUA 1Z85A 2NVXC 2YU9C 2JA7C 4A3JC 1V6ZA 2R92C 3S1QC 1VHYA 5BNZA 1IW7A 4LLGA 4OIPA 4YG2A 4A3EC 3HOUC 1ZJWA 5IZNA 4JXZA 2PMZD 4WFNS 4WFAS 3H3VD 5IYBC 3HOVC 4JYZA 1I6VA 2PA8D 2HZ7A 3S2HC 5FLMC 4BBRC 3FKIC 5IYCC 4QIWD 1B75A 1WCMC 2PI8A 4NOIA 2NVYC 4IO9S 3CQZC 4BBSC 3W2WB 4H3SA 5GADW 2A68A 1Y1WC 5IYDC 4C3JC 4GZYA 1FEUA 4Q5SA 3PIOS 1UDXA 1EUQA 5GAGW 4MEYA 2B63C 4YFXA 1SFOC 2JA8C 4JXXA 3PIPS 3S1RC 5TMFA 4G7HA 3I4NC 4U67S 3GTGC 3GTLC 1BDFA 1I50C 4YFKA 4BY1C 1VHKA 3LYWA 4A3FC 5JVHS 2NVQC 4XLNA 2VUMC 3GTQC 4A3GC 4UY88 4Y7NC 1GTSA 3RZDC 5GAEW 2PICA 2PNWA 1DFUP 1Y1VC 3H0GC 3DXJA 5IP9C 1ZYRA 4OIRA 4AYBD 3S1NC 2L5NA 5D4DA 4A3KC 3GTJC 3CF5S 2R7ZC 1EUYA 2NVTC 3PO3C 2WAQD 4A3BC 1YNNA 4Y52C 2ZJQS 2JA6C 4C2MC 3HKZD 4LJZA 2KXYA 3S1MC 4XSZA
chains in the Genus database with same CATH topology
1QRTA 4JXXA 3PIPS 3X1LB 3DLLS 3AIIA 1O0BA 4WF9S 4U67S 2ZJRS 5HL7S 4WFBS 2RE8A 1QTQA 4V194 5JVHS 2RD2A 5BNZA 5GAHW 4WCES 1QRSA 4P2BA 4UY88 4H4KA 1GTSA 5GAEW 1ZJWA 5IZNA 4IOAS 4JXZA 4WFNS 4WFAS 1DFUP 4JYZA 2ZJPS 2HZ7A 1D6KA 1EXDA 1QRUA 3CF5S 5DM7S 1EUYA 1B75A 5JVGS 4IO9S 1NYLA 3W2WB 4H3SA 3W2VB 5GADW 2ZJQS 1FEUA 5DM6S 1UDXA 3PIOS 3J7ZV 1EUQA 5GAGW 4IOCS 1GTRA 1O0CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QRT A;  4JXX A;  3PIP S;  3DLL S;  3AII A;  1O0B A;  4WF9 S;  4U67 S;  2ZJR S;  5HL7 S;  4WFB S;  2RE8 A;  1QTQ A;  5JVH S;  2RD2 A;  5BNZ A;  5GAH W;  4WCE S;  1QRS A;  4P2B A;  4UY8 8;  1GTS A;  5GAE W;  1ZJW A;  5IZN A;  4IOA S;  4JXZ A;  4WFN S;  4WFA S;  1DFU P;  4JYZ A;  2ZJP S;  2HZ7 A;  1D6K A;  1EXD A;  1QRU A;  3CF5 S;  5DM7 S;  1EUY A;  1B75 A;  5JVG S;  4IO9 S;  1NYL A;  4H3S A;  5GAD W;  2ZJQ S;  1FEU A;  5DM6 S;  3PIO S;  1EUQ A;  3J7Z V;  5GAG W;  4IOC S;  1GTR A;  1O0C A; 
#chains in the Genus database with same CATH topology
 4BXX C;  4LK1 A;  2BE5 A;  4XLP A;  2PJJ A;  5C3E C;  3K7A C;  4WF9 S;  4C3H C;  4ZH4 A;  2E2J C;  2E2I C;  2A6E A;  4A3I C;  2RE8 A;  3PO2 C;  1QTQ A;  1TWF C;  1TWG C;  4C3I C;  4V19 4;  2Y0S D;  2RD2 A;  4WCE S;  1QRS A;  4P2B A;  3HOZ C;  4L69 A;  4H4K A;  4A3D C;  3S15 C;  3WOD A;  5C4X C;  4IOA S;  4X6A C;  2L3U A;  2NWA A;  1EXD A;  4BY7 C;  3S17 C;  1I3Q C;  1SMY A;  2PPB A;  2R93 C;  2G5D A;  2KQ1 A;  3HOX C;  3W2V B;  1YNJ A;  1NXZ A;  4OIQ A;  3J7Z V;  4IOC S;  1GTR A;  5HQH A;  1QRT A;  3GTK C;  4KN4 A;  5TMC A;  4KN7 A;  3DLL S;  4JK1 A;  3AII A;  1O0B A;  4MQ9 A;  4A3M C;  3HOY C;  3S14 C;  4Q4Z A;  5HL7 S;  4WFB S;  3RZO C;  4KMU A;  2Z0Y A;  1I6H C;  4A3C C;  4OIO A;  3CZB A;  5GAH W;  1K83 C;  1R9T C;  4XSX A;  4A93 C;  3S2D C;  2E2H C;  4G7O A;  3KW2 A;  1HQM A;  2GAE A;  5C44 C;  3GTM C;  2O5I A;  2G6G A;  2A6H A;  5C4J C;  3M4O C;  1TWC C;  2ZJP S;  1D6K A;  4LK0 A;  3GTO C;  1QRU A;  2O5J A;  4QJV A;  4J3C A;  1TWA C;  2EGV A;  5DM7 S;  4OIN A;  5JVG S;  4E8B A;  1NYL A;  2EGW A;  3EQL A;  3I4M C;  2CW0 A;  3M3Y C;  3S16 C;  2AE0 X;  2CX8 A;  5DM6 S;  4YFN A;  2WB1 D;  1O0C A;  4G7Z A;  4A3L C;  3X1L B;  3HOW C;  3GTP C;  1TWH C;  2A69 A;  4MEX A;  2JA5 C;  5IP7 C;  2ZJR S;  2KPU A;  1Z85 A;  2NVX C;  2YU9 C;  2JA7 C;  4A3J C;  1V6Z A;  2R92 C;  3S1Q C;  1VHY A;  5BNZ A;  1IW7 A;  4LLG A;  4OIP A;  4YG2 A;  4A3E C;  3HOU C;  1ZJW A;  5IZN A;  4JXZ A;  2PMZ D;  4WFN S;  4WFA S;  3H3V D;  5IYB C;  3HOV C;  4JYZ A;  1I6V A;  2PA8 D;  2HZ7 A;  3S2H C;  5FLM C;  4BBR C;  3FKI C;  5IYC C;  4QIW D;  1B75 A;  1WCM C;  2PI8 A;  4NOI A;  2NVY C;  4IO9 S;  3CQZ C;  4BBS C;  3W2W B;  4H3S A;  5GAD W;  2A68 A;  1Y1W C;  5IYD C;  4C3J C;  4GZY A;  1FEU A;  4Q5S A;  3PIO S;  1UDX A;  1EUQ A;  5GAG W;  4MEY A;  2B63 C;  4YFX A;  1SFO C;  2JA8 C;  4JXX A;  3PIP S;  3S1R C;  5TMF A;  4G7H A;  3I4N C;  4U67 S;  3GTG C;  3GTL C;  1BDF A;  1I50 C;  4YFK A;  4BY1 C;  1VHK A;  3LYW A;  4A3F C;  5JVH S;  2NVQ C;  4XLN A;  2VUM C;  3GTQ C;  4A3G C;  4UY8 8;  4Y7N C;  1GTS A;  3RZD C;  5GAE W;  2PIC A;  2PNW A;  1DFU P;  1Y1V C;  3H0G C;  3DXJ A;  5IP9 C;  1ZYR A;  4OIR A;  4AYB D;  3S1N C;  2L5N A;  5D4D A;  4A3K C;  3GTJ C;  3CF5 S;  2R7Z C;  1EUY A;  2NVT C;  3PO3 C;  2WAQ D;  4A3B C;  1YNN A;  4Y52 C;  2ZJQ S;  2JA6 C;  4C2M C;  3HKZ D;  4LJZ A;  2KXY A;  3S1M C;  4XSZ A; 
#chains in the Genus database with same CATH homology
 1QRT A;  4JXX A;  3PIP S;  3X1L B;  3DLL S;  3AII A;  1O0B A;  4WF9 S;  4U67 S;  2ZJR S;  5HL7 S;  4WFB S;  2RE8 A;  1QTQ A;  4V19 4;  5JVH S;  2RD2 A;  5BNZ A;  5GAH W;  4WCE S;  1QRS A;  4P2B A;  4UY8 8;  4H4K A;  1GTS A;  5GAE W;  1ZJW A;  5IZN A;  4IOA S;  4JXZ A;  4WFN S;  4WFA S;  1DFU P;  4JYZ A;  2ZJP S;  2HZ7 A;  1D6K A;  1EXD A;  1QRU A;  3CF5 S;  5DM7 S;  1EUY A;  1B75 A;  5JVG S;  4IO9 S;  1NYL A;  3W2W B;  4H3S A;  3W2V B;  5GAD W;  2ZJQ S;  1FEU A;  5DM6 S;  1UDX A;  3PIO S;  3J7Z V;  1EUQ A;  5GAG W;  4IOC S;  1GTR A;  1O0C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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