4WCES

The crystal structure of the large ribosomal subunit of staphylococcus aureus
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
167
structure length
167
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S rRNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
total genus 21
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wceS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wceS02
4WFAS 5JVGS 1QRSA 5HL7S 1B75A 3PIOS 1QRTA 4JYZA 5BNZA 3PIPS 4IO9S 4H3SA 5GAHW 3CF5S 2RE8A 1O0CA 1GTSA 5GAGW 1NYLA 5DM7S 2HZ7A 1EXDA 5JVHS 1FEUA 4UY88 3AIIA 5GAEW 2ZJQS 4WCES 1DFUP 4WFNS 2ZJPS 4P2BA 1QTQA 4IOAS 3J7ZV 5DM6S 2ZJRS 1GTRA 3DLLS 4IOCS 4JXXA 1ZJWA 5GADW 1D6KA 2RD2A 1O0BA 5IZNA 4WFBS 4U67S 1EUYA 1EUQA 1QRUA 4JXZA 4WF9S
chains in the Genus database with same CATH superfamily
4A3EC 3GTOC 4BXXC 3M3YC 3KW2A 4BBRC 4JYZA 1I6VA 3PIPS 2B63C 4Y7NC 4H3SA 3S1RC 1WCMC 3CF5S 3HOXC 5GAGW 5DM7S 4KN4A 2JA6C 2PPBA 3W2VB 4YFNA 4A3JC 2JA7C 4UY88 1TWHC 4YG2A 5GAEW 4G7OA 5TMCA 4LLGA 3H3VD 2AE0X 4LJZA 3S15C 4IOAS 4NOIA 5DM6S 4OIRA 3I4MC 1Y1WC 4A3BC 3DLLS 2EGVA 3HKZD 3S17C 5D4DA 1NXZA 1D6KA 3HOZC 4YFKA 1I3QC 4XSZA 3HOWC 1O0BA 3S2HC 5C4JC 5IZNA 4U67S 2GAEA 1QRUA 4V194 1IW7A 3GTKC 4AYBD 3LYWA 5FLMC 3W2WB 4BY1C 2PJJA 4WFAS 5JVGS 2R93C 4A3GC 4XLPA 4X6AC 2JA8C 2NWAA 4C3HC 1R9TC 2PA8D 1GTSA 4XLNA 4GZYA 3CQZC 3K7AC 1HQMA 2JA5C 2CW0A 5JVHS 4KMUA 1FEUA 3I4NC 4BY7C 3AIIA 2ZJQS 5IP7C 4WCES 1YNNA 2ZJPS 2KPUA 2KXYA 2A68A 1TWCC 2R7ZC 1TWFC 3J7ZV 2ZJRS 4Y52C 2PI8A 2O5IA 3S2DC 4MQ9A 4L69A 4A3KC 2RD2A 3H0GC 2E2JC 4J3CA 1EUYA 4WFBS 4ZH4A 1EUQA 1BDFA 2L3UA 2VUMC 3GTMC 3S1QC 5C3EC 3S1NC 2Z0YA 2EGWA 2PNWA 2CX8A 1K83C 1SMYA 2L5NA 5HL7S 2Y0SD 4A3MC 3RZDC 1QRTA 1VHYA 2E2IC 5BNZA 4OIOA 3GTQC 5IYBC 3PO3C 5GAHW 2RE8A 1O0CA 1TWGC 3DXJA 3S1MC 1TWAC 1ZYRA 1VHKA 4A93C 4Q5SA 2O5JA 3GTJC 1EXDA 2NVYC 3GTGC 4JK1A 2R92C 1Z85A 1DFUP 5IYDC 2YU9C 4P2BA 3HOUC 4G7ZA 3S16C 1GTRA 4IOCS 5GADW 4A3LC 2KQ1A 4KN7A 2PMZD 4OINA 3HOVC 3M4OC 2E2HC 4C3JC 4WF9S 3S14C 3RZOC 5HQHA 2BE5A 4QJVA 1QRSA 4OIPA 1UDXA 1B75A 4XSXA 4Q4ZA 3PIOS 4C2MC 3FKIC 4QIWD 5IP9C 2NVQC 4IO9S 4A3FC 3X1LB 4E8BA 2A69A 1Y1VC 4A3IC 3HOYC 5TMFA 1NYLA 2NVTC 4A3CC 2HZ7A 1V6ZA 4A3DC 2WB1D 5C44C 5C4XC 2G6GA 5IYCC 3PO2C 2A6EA 1I50C 3GTLC 4C3IC 4WFNS 1SFOC 1QTQA 4LK0A 3CZBA 4H4KA 4G7HA 4LK1A 4OIQA 3WODA 4JXXA 1ZJWA 3GTPC 4BBSC 4MEYA 4MEXA 2NVXC 2PICA 2G5DA 4JXZA 3EQLA 2A6HA 2WAQD 4YFXA 1I6HC 1YNJA
chains in the Genus database with same CATH topology
4WFAS 5JVGS 1QRSA 1UDXA 5HL7S 1B75A 3PIOS 1QRTA 4JYZA 5BNZA 3PIPS 4IO9S 4H3SA 5GAHW 3CF5S 2RE8A 1O0CA 3X1LB 1GTSA 5GAGW 1NYLA 5DM7S 2HZ7A 1EXDA 3W2VB 5JVHS 1FEUA 4UY88 3AIIA 5GAEW 2ZJQS 4WCES 1DFUP 4WFNS 2ZJPS 4P2BA 1QTQA 4IOAS 3J7ZV 5DM6S 2ZJRS 1GTRA 4H4KA 3DLLS 4IOCS 4JXXA 1ZJWA 5GADW 1D6KA 2RD2A 1O0BA 5IZNA 4WFBS 4U67S 1EUYA 1EUQA 1QRUA 4V194 4JXZA 4WF9S 3W2WB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFA S;  5JVG S;  1QRS A;  5HL7 S;  1B75 A;  3PIO S;  1QRT A;  4JYZ A;  5BNZ A;  3PIP S;  4IO9 S;  4H3S A;  5GAH W;  3CF5 S;  2RE8 A;  1O0C A;  1GTS A;  5GAG W;  1NYL A;  5DM7 S;  2HZ7 A;  1EXD A;  5JVH S;  1FEU A;  4UY8 8;  3AII A;  5GAE W;  2ZJQ S;  4WCE S;  1DFU P;  4WFN S;  2ZJP S;  4P2B A;  1QTQ A;  4IOA S;  3J7Z V;  5DM6 S;  2ZJR S;  1GTR A;  3DLL S;  4IOC S;  4JXX A;  1ZJW A;  5GAD W;  1D6K A;  2RD2 A;  1O0B A;  5IZN A;  4WFB S;  4U67 S;  1EUY A;  1EUQ A;  1QRU A;  4JXZ A;  4WF9 S; 
#chains in the Genus database with same CATH topology
 4A3E C;  3GTO C;  4BXX C;  3M3Y C;  3KW2 A;  4BBR C;  4JYZ A;  1I6V A;  3PIP S;  2B63 C;  4Y7N C;  4H3S A;  3S1R C;  1WCM C;  3CF5 S;  3HOX C;  5GAG W;  5DM7 S;  4KN4 A;  2JA6 C;  2PPB A;  3W2V B;  4YFN A;  4A3J C;  2JA7 C;  4UY8 8;  1TWH C;  4YG2 A;  5GAE W;  4G7O A;  5TMC A;  4LLG A;  3H3V D;  2AE0 X;  4LJZ A;  3S15 C;  4IOA S;  4NOI A;  5DM6 S;  4OIR A;  3I4M C;  1Y1W C;  4A3B C;  3DLL S;  2EGV A;  3HKZ D;  3S17 C;  5D4D A;  1NXZ A;  1D6K A;  3HOZ C;  4YFK A;  1I3Q C;  4XSZ A;  3HOW C;  1O0B A;  3S2H C;  5C4J C;  5IZN A;  4U67 S;  2GAE A;  1QRU A;  4V19 4;  1IW7 A;  3GTK C;  4AYB D;  3LYW A;  5FLM C;  3W2W B;  4BY1 C;  2PJJ A;  4WFA S;  5JVG S;  2R93 C;  4A3G C;  4XLP A;  4X6A C;  2JA8 C;  2NWA A;  4C3H C;  1R9T C;  2PA8 D;  1GTS A;  4XLN A;  4GZY A;  3CQZ C;  3K7A C;  1HQM A;  2JA5 C;  2CW0 A;  5JVH S;  4KMU A;  1FEU A;  3I4N C;  4BY7 C;  3AII A;  2ZJQ S;  5IP7 C;  4WCE S;  1YNN A;  2ZJP S;  2KPU A;  2KXY A;  2A68 A;  1TWC C;  2R7Z C;  1TWF C;  3J7Z V;  2ZJR S;  4Y52 C;  2PI8 A;  2O5I A;  3S2D C;  4MQ9 A;  4L69 A;  4A3K C;  2RD2 A;  3H0G C;  2E2J C;  4J3C A;  1EUY A;  4WFB S;  4ZH4 A;  1EUQ A;  1BDF A;  2L3U A;  2VUM C;  3GTM C;  3S1Q C;  5C3E C;  3S1N C;  2Z0Y A;  2EGW A;  2PNW A;  2CX8 A;  1K83 C;  1SMY A;  2L5N A;  5HL7 S;  2Y0S D;  4A3M C;  3RZD C;  1QRT A;  1VHY A;  2E2I C;  5BNZ A;  4OIO A;  3GTQ C;  5IYB C;  3PO3 C;  5GAH W;  2RE8 A;  1O0C A;  1TWG C;  3DXJ A;  3S1M C;  1TWA C;  1ZYR A;  1VHK A;  4A93 C;  4Q5S A;  2O5J A;  3GTJ C;  1EXD A;  2NVY C;  3GTG C;  4JK1 A;  2R92 C;  1Z85 A;  1DFU P;  5IYD C;  2YU9 C;  4P2B A;  3HOU C;  4G7Z A;  3S16 C;  1GTR A;  4IOC S;  5GAD W;  4A3L C;  2KQ1 A;  4KN7 A;  2PMZ D;  4OIN A;  3HOV C;  3M4O C;  2E2H C;  4C3J C;  4WF9 S;  3S14 C;  3RZO C;  5HQH A;  2BE5 A;  4QJV A;  1QRS A;  4OIP A;  1UDX A;  1B75 A;  4XSX A;  4Q4Z A;  3PIO S;  4C2M C;  3FKI C;  4QIW D;  5IP9 C;  2NVQ C;  4IO9 S;  4A3F C;  3X1L B;  4E8B A;  2A69 A;  1Y1V C;  4A3I C;  3HOY C;  5TMF A;  1NYL A;  2NVT C;  4A3C C;  2HZ7 A;  1V6Z A;  4A3D C;  2WB1 D;  5C44 C;  5C4X C;  2G6G A;  5IYC C;  3PO2 C;  2A6E A;  1I50 C;  3GTL C;  4C3I C;  4WFN S;  1SFO C;  1QTQ A;  4LK0 A;  3CZB A;  4H4K A;  4G7H A;  4LK1 A;  4OIQ A;  3WOD A;  4JXX A;  1ZJW A;  3GTP C;  4BBS C;  4MEY A;  4MEX A;  2NVX C;  2PIC A;  2G5D A;  4JXZ A;  3EQL A;  2A6H A;  2WAQ D;  4YFX A;  1I6H C;  1YNJ A; 
#chains in the Genus database with same CATH homology
 4WFA S;  5JVG S;  1QRS A;  1UDX A;  5HL7 S;  1B75 A;  3PIO S;  1QRT A;  4JYZ A;  5BNZ A;  3PIP S;  4IO9 S;  4H3S A;  5GAH W;  3CF5 S;  2RE8 A;  1O0C A;  3X1L B;  1GTS A;  5GAG W;  1NYL A;  5DM7 S;  2HZ7 A;  1EXD A;  3W2V B;  5JVH S;  1FEU A;  4UY8 8;  3AII A;  5GAE W;  2ZJQ S;  4WCE S;  1DFU P;  4WFN S;  2ZJP S;  4P2B A;  1QTQ A;  4IOA S;  3J7Z V;  5DM6 S;  2ZJR S;  1GTR A;  4H4K A;  3DLL S;  4IOC S;  4JXX A;  1ZJW A;  5GAD W;  1D6K A;  2RD2 A;  1O0B A;  5IZN A;  4WFB S;  4U67 S;  1EUY A;  1EUQ A;  1QRU A;  4V19 4;  4JXZ A;  4WF9 S;  3W2W B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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