4WCES

The crystal structure of the large ribosomal subunit of staphylococcus aureus
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
167
structure length
167
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S rRNA
total genus 21
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wceS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wceS02
4P2BA 4WFNS 1DFUP 4WCES 3PIPS 4IO9S 4IOAS 1QRUA 4WFAS 5IZNA 4H3SA 1ZJWA 1FEUA 4WFBS 1GTRA 5DM7S 2ZJPS 4JXXA 1O0CA 2ZJQS 1O0BA 5GAGW 5BNZA 5JVGS 2RD2A 1QRSA 2RE8A 1B75A 4WF9S 5DM6S 4U67S 1NYLA 5GAHW 4JYZA 4IOCS 1EUYA 4JXZA 5GADW 1GTSA 1QTQA 5GAEW 1EUQA 5HL7S 5JVHS 4UY88 3J7ZV 2HZ7A 1EXDA 1QRTA 3CF5S 2ZJRS 3PIOS 1D6KA 3AIIA 3DLLS
chains in the Genus database with same CATH superfamily
2CW0A 4XSZA 4YFNA 2EGVA 2E2HC 4IO9S 3PIPS 5C4XC 2JA5C 4C3JC 5IYBC 5FLMC 4A3FC 1QRUA 4A3JC 4QIWD 2R7ZC 3M4OC 2B63C 5C3EC 5IYCC 2A68A 4XLNA 1Y1VC 2PMZD 2KXYA 4WFBS 1GTRA 3GTLC 5DM7S 4C3IC 2A6HA 5JVGS 3CQZC 3S1RC 4KN4A 3X1LB 3H3VD 4KN7A 4L69A 4WF9S 3HKZD 4U67S 1NYLA 3S16C 2PICA 3KW2A 4A3DC 4JYZA 4G7ZA 5IP9C 1UDXA 3HOWC 3GTKC 5GADW 2PJJA 3GTGC 5D4DA 3S1NC 1YNJA 1SMYA 1TWGC 2HZ7A 1EXDA 5C4JC 3S14C 5HQHA 4XLPA 4YFXA 1HQMA 3W2WB 3AIIA 4P2BA 4LJZA 4YFKA 4WCES 3RZDC 4IOAS 4MQ9A 1R9TC 4Q5SA 2JA7C 1TWFC 2L5NA 2R93C 4H3SA 2G5DA 2GAEA 1FEUA 4A93C 2E2IC 4LK1A 3HOXC 1Z85A 2ZJPS 3LYWA 4YG2A 2R92C 3DXJA 1QRSA 4G7HA 4ZH4A 5DM6S 5TMCA 2JA8C 2NWAA 3S1QC 1EUYA 4JXZA 4J3CA 3I4MC 2YU9C 5GAEW 1EUQA 5IYDC 3M3YC 3S15C 4A3CC 4A3LC 3WODA 4MEYA 4A3IC 1TWHC 1WCMC 4G7OA 3GTJC 3PIOS 3S2HC 3I4NC 2O5JA 3RZOC 3GTQC 1VHKA 1I50C 2NVXC 3S17C 4KMUA 3HOUC 5IP7C 4Y7NC 4WFAS 5IZNA 4XSXA 4OIRA 2EGWA 4A3BC 3GTMC 2NVQC 4A3GC 3K7AC 4E8BA 4A3KC 4LLGA 2ZJQS 5BNZA 2A6EA 3CZBA 2NVTC 2G6GA 2RE8A 1I6HC 5GAHW 4AYBD 4IOCS 2BE5A 4V194 3HOZC 1YNNA 1QTQA 4Q4ZA 4JK1A 2PPBA 4BBSC 5HL7S 1I6VA 5TMFA 2PA8D 4UY88 2Y0SD 2ZJRS 1K83C 3J7ZV 2KPUA 4BXXC 1IW7A 1QRTA 1BDFA 4OIOA 2AE0X 1Y1WC 4OIQA 2VUMC 1D6KA 3GTPC 2L3UA 1ZYRA 1V6ZA 4BY7C 5C44C 4A3EC 4BBRC 4WFNS 1DFUP 3HOVC 4QJVA 4X6AC 1TWCC 3H0GC 4Y52C 1SFOC 4LK0A 1VHYA 4NOIA 1ZJWA 2PNWA 4OINA 2O5IA 2NVYC 2WAQD 2PI8A 4JXXA 1O0BA 5GAGW 2RD2A 4C2MC 2JA6C 1NXZA 2WB1D 4H4KA 1B75A 3FKIC 4C3HC 2Z0YA 3W2VB 3PO2C 3GTOC 4OIPA 1GTSA 4BY1C 3PO3C 4MEXA 1I3QC 1TWAC 3HOYC 3S1MC 5JVHS 2A69A 3S2DC 4GZYA 4A3MC 3EQLA 2E2JC 2KQ1A 1O0CA 2CX8A 3CF5S 3DLLS
chains in the Genus database with same CATH topology
4P2BA 4WFNS 1DFUP 4WCES 3PIPS 4IO9S 4IOAS 1QRUA 4WFAS 5IZNA 4H3SA 1ZJWA 1FEUA 4WFBS 3AIIA 1GTRA 5DM7S 2ZJPS 4JXXA 1O0CA 2ZJQS 1O0BA 5GAGW 5BNZA 5JVGS 2RD2A 3X1LB 1QRSA 2RE8A 4H4KA 1B75A 4WF9S 5DM6S 4U67S 1NYLA 5GAHW 3W2VB 4JYZA 4IOCS 4V194 1UDXA 1EUYA 4JXZA 5GADW 1GTSA 1QTQA 5GAEW 1EUQA 5HL7S 5JVHS 4UY88 3J7ZV 2HZ7A 1EXDA 1QRTA 3CF5S 2ZJRS 3PIOS 1D6KA 3W2WB 3DLLS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P2B A;  4WFN S;  1DFU P;  4WCE S;  3PIP S;  4IO9 S;  4IOA S;  1QRU A;  4WFA S;  5IZN A;  4H3S A;  1ZJW A;  1FEU A;  4WFB S;  1GTR A;  5DM7 S;  2ZJP S;  4JXX A;  1O0C A;  2ZJQ S;  1O0B A;  5GAG W;  5BNZ A;  5JVG S;  2RD2 A;  1QRS A;  2RE8 A;  1B75 A;  4WF9 S;  5DM6 S;  4U67 S;  1NYL A;  5GAH W;  4JYZ A;  4IOC S;  1EUY A;  4JXZ A;  5GAD W;  1GTS A;  1QTQ A;  5GAE W;  1EUQ A;  5HL7 S;  5JVH S;  4UY8 8;  3J7Z V;  2HZ7 A;  1EXD A;  1QRT A;  3CF5 S;  2ZJR S;  3PIO S;  1D6K A;  3AII A;  3DLL S; 
#chains in the Genus database with same CATH topology
 2CW0 A;  4XSZ A;  4YFN A;  2EGV A;  2E2H C;  4IO9 S;  3PIP S;  5C4X C;  2JA5 C;  4C3J C;  5IYB C;  5FLM C;  4A3F C;  1QRU A;  4A3J C;  4QIW D;  2R7Z C;  3M4O C;  2B63 C;  5C3E C;  5IYC C;  2A68 A;  4XLN A;  1Y1V C;  2PMZ D;  2KXY A;  4WFB S;  1GTR A;  3GTL C;  5DM7 S;  4C3I C;  2A6H A;  5JVG S;  3CQZ C;  3S1R C;  4KN4 A;  3X1L B;  3H3V D;  4KN7 A;  4L69 A;  4WF9 S;  3HKZ D;  4U67 S;  1NYL A;  3S16 C;  2PIC A;  3KW2 A;  4A3D C;  4JYZ A;  4G7Z A;  5IP9 C;  1UDX A;  3HOW C;  3GTK C;  5GAD W;  2PJJ A;  3GTG C;  5D4D A;  3S1N C;  1YNJ A;  1SMY A;  1TWG C;  2HZ7 A;  1EXD A;  5C4J C;  3S14 C;  5HQH A;  4XLP A;  4YFX A;  1HQM A;  3W2W B;  3AII A;  4P2B A;  4LJZ A;  4YFK A;  4WCE S;  3RZD C;  4IOA S;  4MQ9 A;  1R9T C;  4Q5S A;  2JA7 C;  1TWF C;  2L5N A;  2R93 C;  4H3S A;  2G5D A;  2GAE A;  1FEU A;  4A93 C;  2E2I C;  4LK1 A;  3HOX C;  1Z85 A;  2ZJP S;  3LYW A;  4YG2 A;  2R92 C;  3DXJ A;  1QRS A;  4G7H A;  4ZH4 A;  5DM6 S;  5TMC A;  2JA8 C;  2NWA A;  3S1Q C;  1EUY A;  4JXZ A;  4J3C A;  3I4M C;  2YU9 C;  5GAE W;  1EUQ A;  5IYD C;  3M3Y C;  3S15 C;  4A3C C;  4A3L C;  3WOD A;  4MEY A;  4A3I C;  1TWH C;  1WCM C;  4G7O A;  3GTJ C;  3PIO S;  3S2H C;  3I4N C;  2O5J A;  3RZO C;  3GTQ C;  1VHK A;  1I50 C;  2NVX C;  3S17 C;  4KMU A;  3HOU C;  5IP7 C;  4Y7N C;  4WFA S;  5IZN A;  4XSX A;  4OIR A;  2EGW A;  4A3B C;  3GTM C;  2NVQ C;  4A3G C;  3K7A C;  4E8B A;  4A3K C;  4LLG A;  2ZJQ S;  5BNZ A;  2A6E A;  3CZB A;  2NVT C;  2G6G A;  2RE8 A;  1I6H C;  5GAH W;  4AYB D;  4IOC S;  2BE5 A;  4V19 4;  3HOZ C;  1YNN A;  1QTQ A;  4Q4Z A;  4JK1 A;  2PPB A;  4BBS C;  5HL7 S;  1I6V A;  5TMF A;  2PA8 D;  4UY8 8;  2Y0S D;  2ZJR S;  1K83 C;  3J7Z V;  2KPU A;  4BXX C;  1IW7 A;  1QRT A;  1BDF A;  4OIO A;  2AE0 X;  1Y1W C;  4OIQ A;  2VUM C;  1D6K A;  3GTP C;  2L3U A;  1ZYR A;  1V6Z A;  4BY7 C;  5C44 C;  4A3E C;  4BBR C;  4WFN S;  1DFU P;  3HOV C;  4QJV A;  4X6A C;  1TWC C;  3H0G C;  4Y52 C;  1SFO C;  4LK0 A;  1VHY A;  4NOI A;  1ZJW A;  2PNW A;  4OIN A;  2O5I A;  2NVY C;  2WAQ D;  2PI8 A;  4JXX A;  1O0B A;  5GAG W;  2RD2 A;  4C2M C;  2JA6 C;  1NXZ A;  2WB1 D;  4H4K A;  1B75 A;  3FKI C;  4C3H C;  2Z0Y A;  3W2V B;  3PO2 C;  3GTO C;  4OIP A;  1GTS A;  4BY1 C;  3PO3 C;  4MEX A;  1I3Q C;  1TWA C;  3HOY C;  3S1M C;  5JVH S;  2A69 A;  3S2D C;  4GZY A;  4A3M C;  3EQL A;  2E2J C;  2KQ1 A;  1O0C A;  2CX8 A;  3CF5 S;  3DLL S; 
#chains in the Genus database with same CATH homology
 4P2B A;  4WFN S;  1DFU P;  4WCE S;  3PIP S;  4IO9 S;  4IOA S;  1QRU A;  4WFA S;  5IZN A;  4H3S A;  1ZJW A;  1FEU A;  4WFB S;  3AII A;  1GTR A;  5DM7 S;  2ZJP S;  4JXX A;  1O0C A;  2ZJQ S;  1O0B A;  5GAG W;  5BNZ A;  5JVG S;  2RD2 A;  3X1L B;  1QRS A;  2RE8 A;  4H4K A;  1B75 A;  4WF9 S;  5DM6 S;  4U67 S;  1NYL A;  5GAH W;  3W2V B;  4JYZ A;  4IOC S;  4V19 4;  1UDX A;  1EUY A;  4JXZ A;  5GAD W;  1GTS A;  1QTQ A;  5GAE W;  1EUQ A;  5HL7 S;  5JVH S;  4UY8 8;  3J7Z V;  2HZ7 A;  1EXD A;  1QRT A;  3CF5 S;  2ZJR S;  3PIO S;  1D6K A;  3W2W B;  3DLL S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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