4WCES

The crystal structure of the large ribosomal subunit of staphylococcus aureus
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
167
structure length
167
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S rRNA
total genus 21
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wceS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wceS02
1QRSA 4IOAS 5JVHS 2ZJRS 3DLLS 1QTQA 5GAGW 4U67S 4JXXA 4JYZA 5DM7S 3PIPS 1FEUA 1GTSA 1QRUA 4WFNS 4WCES 1EUQA 4WFBS 4IOCS 4WFAS 2ZJQS 1GTRA 4UY88 3AIIA 2RE8A 5HL7S 5BNZA 5GAHW 1NYLA 2HZ7A 3J7ZV 1ZJWA 2RD2A 5GADW 1B75A 1O0CA 1D6KA 2ZJPS 1EUYA 4IO9S 1QRTA 4JXZA 1DFUP 5JVGS 4P2BA 1EXDA 1O0BA 3CF5S 4WF9S 4H3SA 5GAEW 3PIOS 5DM6S 5IZNA
chains in the Genus database with same CATH superfamily
3PO2C 4IOAS 2E2IC 2NVYC 4A3IC 4A3JC 5JVHS 1QTQA 3DLLS 5IYBC 4YG2A 3S1MC 1YNJA 2KQ1A 3PIPS 4AYBD 5TMCA 1FEUA 3M3YC 3HOYC 1I6HC 2NWAA 4WFNS 4WCES 1EUQA 3HKZD 4OIRA 2PPBA 4X6AC 4XSXA 3S15C 2A68A 4MEYA 3RZDC 3PO3C 1VHKA 3S2DC 5HQHA 4XSZA 4MEXA 1V6ZA 5BNZA 5HL7S 5GAHW 2L3UA 1WCMC 3M4OC 1R9TC 3KW2A 4YFXA 2NVTC 3I4MC 4QIWD 5GADW 3GTOC 2O5JA 2ZJPS 1EUYA 4WF9S 2PA8D 5JVGS 4Y52C 1O0BA 1IW7A 1TWFC 4OINA 4G7OA 3GTLC 4C3JC 4A3FC 5IYDC 1Y1WC 1QRSA 4MQ9A 3GTMC 2R7ZC 2PMZD 3HOWC 1SMYA 3H0GC 4LLGA 2ZJRS 5GAGW 4XLNA 3HOXC 1I6VA 4OIOA 3W2VB 1TWGC 1GTSA 3GTPC 1QRUA 4A3BC 2BE5A 4BY1C 5IP7C 1HQMA 4LK1A 4V194 4OIPA 2CX8A 4Y7NC 4LJZA 2PJJA 1UDXA 2RE8A 1Y1VC 3S1QC 2HZ7A 1NXZA 2KXYA 4C3IC 2G6GA 4BBSC 2GAEA 2CW0A 4OIQA 4L69A 2AE0X 4QJVA 2Y0SD 4IO9S 2A6EA 4JK1A 3S2HC 3X1LB 4A3MC 2PI8A 4H3SA 5GAEW 4J3CA 1TWCC 4YFKA 2O5IA 3HOZC 1ZYRA 5IZNA 3W2WB 2E2JC 2E2HC 1SFOC 1VHYA 1YNNA 4U67S 4JXXA 1BDFA 4ZH4A 3WODA 4BBRC 5DM7S 4E8BA 2G5DA 2NVQC 4A93C 2PNWA 3EQLA 4C3HC 2JA8C 3HOVC 4A3GC 3S14C 4A3EC 2ZJQS 4LK0A 3GTKC 4BXXC 4G7HA 3GTGC 4UY88 5C3EC 4BY7C 1NYLA 2YU9C 4Q5SA 2KPUA 5D4DA 3I4NC 5C4XC 3S1RC 1O0CA 1D6KA 2L5NA 3S17C 1DFUP 2R93C 4JXZA 4P2BA 2A6HA 4A3KC 4A3DC 4H4KA 4G7ZA 3PIOS 2EGWA 4JYZA 5DM6S 3LYWA 2NVXC 2JA6C 2EGVA 3CZBA 3S1NC 2B63C 2JA7C 2PICA 3K7AC 4YFNA 5TMFA 1TWAC 4KN7A 2Z0YA 4KN4A 5FLMC 4XLPA 3FKIC 3CQZC 3HOUC 1TWHC 4A3LC 4A3CC 3S16C 4WFBS 2A69A 2R92C 4IOCS 4WFAS 4KMUA 1GTRA 3RZOC 3AIIA 3J7ZV 2VUMC 1ZJWA 3DXJA 3GTJC 4NOIA 1Z85A 1I50C 4C2MC 5C4JC 2RD2A 1B75A 1K83C 5C44C 3H3VD 1QRTA 5IP9C 2WAQD 1EXDA 3CF5S 3GTQC 4GZYA 1I3QC 2WB1D 5IYCC 2JA5C 4Q4ZA
chains in the Genus database with same CATH topology
1QRSA 4IOAS 5JVHS 2ZJRS 3DLLS 1QTQA 5GAGW 4U67S 4JXXA 4JYZA 5DM7S 3PIPS 3W2VB 1FEUA 1GTSA 1QRUA 4WFNS 4WCES 1EUQA 4WFBS 4IOCS 4WFAS 4V194 2ZJQS 1GTRA 4UY88 3AIIA 1UDXA 5HL7S 5BNZA 5GAHW 1NYLA 2HZ7A 3J7ZV 2RE8A 1ZJWA 3W2WB 2RD2A 5GADW 1B75A 1O0CA 1D6KA 2ZJPS 1EUYA 4IO9S 1QRTA 4JXZA 1DFUP 5JVGS 4P2BA 1EXDA 1O0BA 3CF5S 3X1LB 4H4KA 4H3SA 5GAEW 3PIOS 4WF9S 5DM6S 5IZNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QRS A;  4IOA S;  5JVH S;  2ZJR S;  3DLL S;  1QTQ A;  5GAG W;  4U67 S;  4JXX A;  4JYZ A;  5DM7 S;  3PIP S;  1FEU A;  1GTS A;  1QRU A;  4WFN S;  4WCE S;  1EUQ A;  4WFB S;  4IOC S;  4WFA S;  2ZJQ S;  1GTR A;  4UY8 8;  3AII A;  2RE8 A;  5HL7 S;  5BNZ A;  5GAH W;  1NYL A;  2HZ7 A;  3J7Z V;  1ZJW A;  2RD2 A;  5GAD W;  1B75 A;  1O0C A;  1D6K A;  2ZJP S;  1EUY A;  4IO9 S;  1QRT A;  4JXZ A;  1DFU P;  5JVG S;  4P2B A;  1EXD A;  1O0B A;  3CF5 S;  4WF9 S;  4H3S A;  5GAE W;  3PIO S;  5DM6 S;  5IZN A; 
#chains in the Genus database with same CATH topology
 3PO2 C;  4IOA S;  2E2I C;  2NVY C;  4A3I C;  4A3J C;  5JVH S;  1QTQ A;  3DLL S;  5IYB C;  4YG2 A;  3S1M C;  1YNJ A;  2KQ1 A;  3PIP S;  4AYB D;  5TMC A;  1FEU A;  3M3Y C;  3HOY C;  1I6H C;  2NWA A;  4WFN S;  4WCE S;  1EUQ A;  3HKZ D;  4OIR A;  2PPB A;  4X6A C;  4XSX A;  3S15 C;  2A68 A;  4MEY A;  3RZD C;  3PO3 C;  1VHK A;  3S2D C;  5HQH A;  4XSZ A;  4MEX A;  1V6Z A;  5BNZ A;  5HL7 S;  5GAH W;  2L3U A;  1WCM C;  3M4O C;  1R9T C;  3KW2 A;  4YFX A;  2NVT C;  3I4M C;  4QIW D;  5GAD W;  3GTO C;  2O5J A;  2ZJP S;  1EUY A;  4WF9 S;  2PA8 D;  5JVG S;  4Y52 C;  1O0B A;  1IW7 A;  1TWF C;  4OIN A;  4G7O A;  3GTL C;  4C3J C;  4A3F C;  5IYD C;  1Y1W C;  1QRS A;  4MQ9 A;  3GTM C;  2R7Z C;  2PMZ D;  3HOW C;  1SMY A;  3H0G C;  4LLG A;  2ZJR S;  5GAG W;  4XLN A;  3HOX C;  1I6V A;  4OIO A;  3W2V B;  1TWG C;  1GTS A;  3GTP C;  1QRU A;  4A3B C;  2BE5 A;  4BY1 C;  5IP7 C;  1HQM A;  4LK1 A;  4V19 4;  4OIP A;  2CX8 A;  4Y7N C;  4LJZ A;  2PJJ A;  1UDX A;  2RE8 A;  1Y1V C;  3S1Q C;  2HZ7 A;  1NXZ A;  2KXY A;  4C3I C;  2G6G A;  4BBS C;  2GAE A;  2CW0 A;  4OIQ A;  4L69 A;  2AE0 X;  4QJV A;  2Y0S D;  4IO9 S;  2A6E A;  4JK1 A;  3S2H C;  3X1L B;  4A3M C;  2PI8 A;  4H3S A;  5GAE W;  4J3C A;  1TWC C;  4YFK A;  2O5I A;  3HOZ C;  1ZYR A;  5IZN A;  3W2W B;  2E2J C;  2E2H C;  1SFO C;  1VHY A;  1YNN A;  4U67 S;  4JXX A;  1BDF A;  4ZH4 A;  3WOD A;  4BBR C;  5DM7 S;  4E8B A;  2G5D A;  2NVQ C;  4A93 C;  2PNW A;  3EQL A;  4C3H C;  2JA8 C;  3HOV C;  4A3G C;  3S14 C;  4A3E C;  2ZJQ S;  4LK0 A;  3GTK C;  4BXX C;  4G7H A;  3GTG C;  4UY8 8;  5C3E C;  4BY7 C;  1NYL A;  2YU9 C;  4Q5S A;  2KPU A;  5D4D A;  3I4N C;  5C4X C;  3S1R C;  1O0C A;  1D6K A;  2L5N A;  3S17 C;  1DFU P;  2R93 C;  4JXZ A;  4P2B A;  2A6H A;  4A3K C;  4A3D C;  4H4K A;  4G7Z A;  3PIO S;  2EGW A;  4JYZ A;  5DM6 S;  3LYW A;  2NVX C;  2JA6 C;  2EGV A;  3CZB A;  3S1N C;  2B63 C;  2JA7 C;  2PIC A;  3K7A C;  4YFN A;  5TMF A;  1TWA C;  4KN7 A;  2Z0Y A;  4KN4 A;  5FLM C;  4XLP A;  3FKI C;  3CQZ C;  3HOU C;  1TWH C;  4A3L C;  4A3C C;  3S16 C;  4WFB S;  2A69 A;  2R92 C;  4IOC S;  4WFA S;  4KMU A;  1GTR A;  3RZO C;  3AII A;  3J7Z V;  2VUM C;  1ZJW A;  3DXJ A;  3GTJ C;  4NOI A;  1Z85 A;  1I50 C;  4C2M C;  5C4J C;  2RD2 A;  1B75 A;  1K83 C;  5C44 C;  3H3V D;  1QRT A;  5IP9 C;  2WAQ D;  1EXD A;  3CF5 S;  3GTQ C;  4GZY A;  1I3Q C;  2WB1 D;  5IYC C;  2JA5 C;  4Q4Z A; 
#chains in the Genus database with same CATH homology
 1QRS A;  4IOA S;  5JVH S;  2ZJR S;  3DLL S;  1QTQ A;  5GAG W;  4U67 S;  4JXX A;  4JYZ A;  5DM7 S;  3PIP S;  3W2V B;  1FEU A;  1GTS A;  1QRU A;  4WFN S;  4WCE S;  1EUQ A;  4WFB S;  4IOC S;  4WFA S;  4V19 4;  2ZJQ S;  1GTR A;  4UY8 8;  3AII A;  1UDX A;  5HL7 S;  5BNZ A;  5GAH W;  1NYL A;  2HZ7 A;  3J7Z V;  2RE8 A;  1ZJW A;  3W2W B;  2RD2 A;  5GAD W;  1B75 A;  1O0C A;  1D6K A;  2ZJP S;  1EUY A;  4IO9 S;  1QRT A;  4JXZ A;  1DFU P;  5JVG S;  4P2B A;  1EXD A;  1O0B A;  3CF5 S;  3X1L B;  4H4K A;  4H3S A;  5GAE W;  3PIO S;  4WF9 S;  5DM6 S;  5IZN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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