4WF9K

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with telithromycin
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
119
structure length
119
Chain Sequence
RKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
total genus 31
structure length 119
sequence length 119
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 4wf9K00
4WFAK 4WF9K 3CF5K 3PIOK 5MLCP 2ZJQK 4IOCK 4UY8N 5GADO 5H1SP 3J7ZN 5DM6K 5GAEO 5GAHO 5JVHK 3PIPK 4IO9K 5DM7K 5HL7K 4WFNK 5GAGO 2ZJRK 4WCEK 2ZJPK 5JVGK 2CQMA 4U67K 1GD8A 4IOAK 3DLLK 4WFBK
chains in the Genus database with same CATH superfamily
4WFAK 4WF9K 3CF5K 3PIOK 5MLCP 2ZJQK 4IOCK 4UY8N 5GADO 5H1SP 3J7ZN 5DM6K 5GAEO 5GAHO 5JVHK 3PIPK 4IO9K 5DM7K 5HL7K 4WFNK 5GAGO 2ZJRK 4WCEK 2ZJPK 5JVGK 2CQMA 4U67K 1GD8A 4IOAK 3DLLK 4WFBK
chains in the Genus database with same CATH topology
4WFAK 4WF9K 3CF5K 3PIOK 5MLCP 2ZJQK 4IOCK 4UY8N 5GADO 5H1SP 3J7ZN 5DM6K 5GAEO 5GAHO 5JVHK 3PIPK 4IO9K 5DM7K 5HL7K 4WFNK 5GAGO 2ZJRK 4WCEK 2ZJPK 5JVGK 2CQMA 4U67K 1GD8A 4IOAK 3DLLK 4WFBK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFA K;  4WF9 K;  3CF5 K;  3PIO K;  5MLC P;  2ZJQ K;  4IOC K;  4UY8 N;  5GAD O;  5H1S P;  3J7Z N;  5DM6 K;  5GAE O;  5GAH O;  5JVH K;  3PIP K;  4IO9 K;  5DM7 K;  5HL7 K;  4WFN K;  5GAG O;  2ZJR K;  4WCE K;  2ZJP K;  5JVG K;  2CQM A;  4U67 K;  1GD8 A;  4IOA K;  3DLL K;  4WFB K; 
#chains in the Genus database with same CATH topology
 4WFA K;  4WF9 K;  3CF5 K;  3PIO K;  5MLC P;  2ZJQ K;  4IOC K;  4UY8 N;  5GAD O;  5H1S P;  3J7Z N;  5DM6 K;  5GAE O;  5GAH O;  5JVH K;  3PIP K;  4IO9 K;  5DM7 K;  5HL7 K;  4WFN K;  5GAG O;  2ZJR K;  4WCE K;  2ZJP K;  5JVG K;  2CQM A;  4U67 K;  1GD8 A;  4IOA K;  3DLL K;  4WFB K; 
#chains in the Genus database with same CATH homology
 4WFA K;  4WF9 K;  3CF5 K;  3PIO K;  5MLC P;  2ZJQ K;  4IOC K;  4UY8 N;  5GAD O;  5H1S P;  3J7Z N;  5DM6 K;  5GAE O;  5GAH O;  5JVH K;  3PIP K;  4IO9 K;  5DM7 K;  5HL7 K;  4WFN K;  5GAG O;  2ZJR K;  4WCE K;  2ZJP K;  5JVG K;  2CQM A;  4U67 K;  1GD8 A;  4IOA K;  3DLL K;  4WFB K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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