4WFBS

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with bc-3205
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
167
structure length
157
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPNINDSLTVADVKVTGDFKIEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S rRNA
total genus 17
structure length 157
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wfbS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wfbS02
4IO9S 1QRSA 4WCES 4IOAS 5JVGS 1QRUA 2ZJRS 2RE8A 1D6KA 4JYZA 1DFUP 4WFBS 4P2BA 1QRTA 4U67S 5JVHS 5GADW 4WFNS 2ZJQS 1O0BA 3J7ZV 1B75A 3DLLS 1EUYA 1GTRA 2ZJPS 1QTQA 4WFAS 4JXZA 5GAHW 4JXXA 5BNZA 1EXDA 3CF5S 4UY88 1O0CA 5DM6S 5IZNA 3PIOS 2RD2A 5HL7S 3AIIA 4H3SA 3PIPS 4WF9S 1GTSA 5GAGW 1NYLA 5DM7S 1EUQA 1ZJWA 4IOCS 2HZ7A 1FEUA 5GAEW
chains in the Genus database with same CATH superfamily
4Q5SA 2KXYA 3S16C 4E8BA 4WCES 1QRSA 3GTQC 1QRUA 1Z85A 2R93C 4WFBS 1TWHC 4XLPA 3HOVC 1QRTA 1YNNA 1TWCC 1I3QC 2E2IC 2JA8C 1YNJA 3GTGC 1B75A 1GTRA 2EGWA 2A68A 2NVXC 4A3DC 4A3GC 4X6AC 4A3IC 3I4NC 5GAHW 4JXXA 2NVYC 4YG2A 1Y1WC 2VUMC 2B63C 1VHKA 5DM6S 3S2DC 1R9TC 5FLMC 3I4MC 4BY7C 2AE0X 4H3SA 3PIPS 3S1RC 3W2VB 2O5JA 4XLNA 1I6HC 5GAGW 5HQHA 4AYBD 3H3VD 1ZJWA 1Y1VC 5TMFA 4A93C 3HOXC 1EUYA 2HZ7A 2E2JC 2CW0A 4KN7A 4OIQA 3LYWA 4BBRC 2R92C 2A6EA 2E2HC 3S17C 3S1MC 4IOAS 3HKZD 2ZJRS 2RE8A 2KPUA 2G5DA 4C2MC 3GTMC 4OIPA 2JA7C 1I50C 4NOIA 3S15C 4C3JC 4A3CC 4U67S 4WFNS 2ZJQS 1O0BA 3S2HC 3J7ZV 2ZJPS 4BBSC 4A3KC 5IYDC 2NWAA 1SMYA 3PO3C 3PIOS 4Q4ZA 3AIIA 5HL7S 3W2WB 2BE5A 4A3FC 3S1QC 1GTSA 1V6ZA 2NVTC 1NYLA 2A6HA 2YU9C 1UDXA 4A3EC 3GTPC 3HOZC 3CZBA 1TWGC 5GAEW 4IO9S 4MEYA 4L69A 5IYBC 2PMZD 3S14C 3GTKC 3GTLC 4JK1A 3KW2A 5JVGS 4XSXA 5IP9C 1SFOC 1DFUP 4P2BA 1K83C 3M4OC 1BDFA 1ZYRA 2PICA 4V194 1NXZA 5TMCA 3GTJC 1VHYA 2WAQD 2O5IA 2PA8D 4H4KA 4OIOA 4A3LC 3RZDC 2EGVA 4WFAS 4JXZA 4A3BC 4UY88 1EXDA 3CF5S 1O0CA 4QIWD 1IW7A 2KQ1A 4A3JC 3GTOC 2RD2A 2L3UA 4KMUA 5DM7S 4A3MC 1TWAC 5C3EC 4OINA 2JA6C 4IOCS 1FEUA 5D4DA 4XSZA 3DXJA 2GAEA 2Y0SD 3PO2C 3X1LB 3EQLA 1WCMC 4C3HC 1TWFC 4QJVA 4J3CA 1D6KA 3K7AC 4JYZA 4LK0A 4YFKA 4Y7NC 3WODA 4BY1C 3M3YC 5C4XC 2WB1D 4YFNA 3S1NC 2PPBA 4G7OA 2PJJA 3HOYC 3HOUC 5JVHS 5GADW 4LJZA 4MEXA 3HOWC 2L5NA 3DLLS 2A69A 4GZYA 4ZH4A 2PI8A 2G6GA 4LLGA 3FKIC 4OIRA 3CQZC 1I6VA 5C44C 1QTQA 4G7ZA 4Y52C 2NVQC 5BNZA 4LK1A 4KN4A 4YFXA 4G7HA 4MQ9A 2Z0YA 5IZNA 5IYCC 2CX8A 2PNWA 2JA5C 4WF9S 4C3IC 4BXXC 5C4JC 1EUQA 3RZOC 5IP7C 1HQMA 2R7ZC 3H0GC
chains in the Genus database with same CATH topology
4IO9S 3X1LB 1QRSA 4WCES 4IOAS 5JVGS 1QRUA 2ZJRS 2RE8A 1D6KA 4JYZA 1DFUP 4WFBS 4P2BA 1QRTA 4V194 4U67S 5JVHS 5GADW 4WFNS 2ZJQS 4H4KA 1O0BA 3J7ZV 1B75A 3DLLS 1EUYA 1GTRA 2ZJPS 1QTQA 4WFAS 4JXZA 5GAHW 4JXXA 5BNZA 1EXDA 3CF5S 4UY88 1O0CA 5DM6S 5IZNA 3PIOS 2RD2A 5HL7S 3AIIA 3W2WB 4H3SA 3PIPS 4WF9S 3W2VB 1GTSA 5GAGW 1NYLA 5DM7S 1EUQA 1ZJWA 1UDXA 4IOCS 2HZ7A 1FEUA 5GAEW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IO9 S;  1QRS A;  4WCE S;  4IOA S;  5JVG S;  1QRU A;  2ZJR S;  2RE8 A;  1D6K A;  4JYZ A;  1DFU P;  4WFB S;  4P2B A;  1QRT A;  4U67 S;  5JVH S;  5GAD W;  4WFN S;  2ZJQ S;  1O0B A;  3J7Z V;  1B75 A;  3DLL S;  1EUY A;  1GTR A;  2ZJP S;  1QTQ A;  4WFA S;  4JXZ A;  5GAH W;  4JXX A;  5BNZ A;  1EXD A;  3CF5 S;  4UY8 8;  1O0C A;  5DM6 S;  5IZN A;  3PIO S;  2RD2 A;  5HL7 S;  3AII A;  4H3S A;  3PIP S;  4WF9 S;  1GTS A;  5GAG W;  1NYL A;  5DM7 S;  1EUQ A;  1ZJW A;  4IOC S;  2HZ7 A;  1FEU A;  5GAE W; 
#chains in the Genus database with same CATH topology
 4Q5S A;  2KXY A;  3S16 C;  4E8B A;  4WCE S;  1QRS A;  3GTQ C;  1QRU A;  1Z85 A;  2R93 C;  4WFB S;  1TWH C;  4XLP A;  3HOV C;  1QRT A;  1YNN A;  1TWC C;  1I3Q C;  2E2I C;  2JA8 C;  1YNJ A;  3GTG C;  1B75 A;  1GTR A;  2EGW A;  2A68 A;  2NVX C;  4A3D C;  4A3G C;  4X6A C;  4A3I C;  3I4N C;  5GAH W;  4JXX A;  2NVY C;  4YG2 A;  1Y1W C;  2VUM C;  2B63 C;  1VHK A;  5DM6 S;  3S2D C;  1R9T C;  5FLM C;  3I4M C;  4BY7 C;  2AE0 X;  4H3S A;  3PIP S;  3S1R C;  3W2V B;  2O5J A;  4XLN A;  1I6H C;  5GAG W;  5HQH A;  4AYB D;  3H3V D;  1ZJW A;  1Y1V C;  5TMF A;  4A93 C;  3HOX C;  1EUY A;  2HZ7 A;  2E2J C;  2CW0 A;  4KN7 A;  4OIQ A;  3LYW A;  4BBR C;  2R92 C;  2A6E A;  2E2H C;  3S17 C;  3S1M C;  4IOA S;  3HKZ D;  2ZJR S;  2RE8 A;  2KPU A;  2G5D A;  4C2M C;  3GTM C;  4OIP A;  2JA7 C;  1I50 C;  4NOI A;  3S15 C;  4C3J C;  4A3C C;  4U67 S;  4WFN S;  2ZJQ S;  1O0B A;  3S2H C;  3J7Z V;  2ZJP S;  4BBS C;  4A3K C;  5IYD C;  2NWA A;  1SMY A;  3PO3 C;  3PIO S;  4Q4Z A;  3AII A;  5HL7 S;  3W2W B;  2BE5 A;  4A3F C;  3S1Q C;  1GTS A;  1V6Z A;  2NVT C;  1NYL A;  2A6H A;  2YU9 C;  1UDX A;  4A3E C;  3GTP C;  3HOZ C;  3CZB A;  1TWG C;  5GAE W;  4IO9 S;  4MEY A;  4L69 A;  5IYB C;  2PMZ D;  3S14 C;  3GTK C;  3GTL C;  4JK1 A;  3KW2 A;  5JVG S;  4XSX A;  5IP9 C;  1SFO C;  1DFU P;  4P2B A;  1K83 C;  3M4O C;  1BDF A;  1ZYR A;  2PIC A;  4V19 4;  1NXZ A;  5TMC A;  3GTJ C;  1VHY A;  2WAQ D;  2O5I A;  2PA8 D;  4H4K A;  4OIO A;  4A3L C;  3RZD C;  2EGV A;  4WFA S;  4JXZ A;  4A3B C;  4UY8 8;  1EXD A;  3CF5 S;  1O0C A;  4QIW D;  1IW7 A;  2KQ1 A;  4A3J C;  3GTO C;  2RD2 A;  2L3U A;  4KMU A;  5DM7 S;  4A3M C;  1TWA C;  5C3E C;  4OIN A;  2JA6 C;  4IOC S;  1FEU A;  5D4D A;  4XSZ A;  3DXJ A;  2GAE A;  2Y0S D;  3PO2 C;  3X1L B;  3EQL A;  1WCM C;  4C3H C;  1TWF C;  4QJV A;  4J3C A;  1D6K A;  3K7A C;  4JYZ A;  4LK0 A;  4YFK A;  4Y7N C;  3WOD A;  4BY1 C;  3M3Y C;  5C4X C;  2WB1 D;  4YFN A;  3S1N C;  2PPB A;  4G7O A;  2PJJ A;  3HOY C;  3HOU C;  5JVH S;  5GAD W;  4LJZ A;  4MEX A;  3HOW C;  2L5N A;  3DLL S;  2A69 A;  4GZY A;  4ZH4 A;  2PI8 A;  2G6G A;  4LLG A;  3FKI C;  4OIR A;  3CQZ C;  1I6V A;  5C44 C;  1QTQ A;  4G7Z A;  4Y52 C;  2NVQ C;  5BNZ A;  4LK1 A;  4KN4 A;  4YFX A;  4G7H A;  4MQ9 A;  2Z0Y A;  5IZN A;  5IYC C;  2CX8 A;  2PNW A;  2JA5 C;  4WF9 S;  4C3I C;  4BXX C;  5C4J C;  1EUQ A;  3RZO C;  5IP7 C;  1HQM A;  2R7Z C;  3H0G C; 
#chains in the Genus database with same CATH homology
 4IO9 S;  3X1L B;  1QRS A;  4WCE S;  4IOA S;  5JVG S;  1QRU A;  2ZJR S;  2RE8 A;  1D6K A;  4JYZ A;  1DFU P;  4WFB S;  4P2B A;  1QRT A;  4V19 4;  4U67 S;  5JVH S;  5GAD W;  4WFN S;  2ZJQ S;  4H4K A;  1O0B A;  3J7Z V;  1B75 A;  3DLL S;  1EUY A;  1GTR A;  2ZJP S;  1QTQ A;  4WFA S;  4JXZ A;  5GAH W;  4JXX A;  5BNZ A;  1EXD A;  3CF5 S;  4UY8 8;  1O0C A;  5DM6 S;  5IZN A;  3PIO S;  2RD2 A;  5HL7 S;  3AII A;  3W2W B;  4H3S A;  3PIP S;  4WF9 S;  3W2V B;  1GTS A;  5GAG W;  1NYL A;  5DM7 S;  1EUQ A;  1ZJW A;  1UDX A;  4IOC S;  2HZ7 A;  1FEU A;  5GAE W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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