4WFBS

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with bc-3205
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
167
structure length
157
Chain Sequence
b'SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPNINDSLTVADVKVTGDFKIEN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S rRNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
total genus 17
structure length 157
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wfbS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wfbS02
5DM7S 4JXXA 2ZJPS 4UY88 1ZJWA 2ZJRS 5JVGS 1EUQA 1EUYA 4IOAS 1QRSA 3DLLS 4WFBS 5JVHS 4JYZA 1O0CA 3PIOS 3J7ZV 4WCES 1B75A 1QRTA 2RE8A 2RD2A 4P2BA 4JXZA 5GAHW 3AIIA 5HL7S 5IZNA 5DM6S 1GTSA 5BNZA 1GTRA 1DFUP 1QTQA 1FEUA 2HZ7A 4IOCS 3PIPS 4WF9S 4U67S 4IO9S 5GAEW 5GADW 1NYLA 1O0BA 1QRUA 4WFAS 5GAGW 1D6KA 3CF5S 2ZJQS 4WFNS 4H3SA 1EXDA
chains in the Genus database with same CATH superfamily
4J3CA 4YFXA 1BDFA 5DM7S 2ZJPS 3WODA 4Y52C 1Z85A 4LJZA 4G7HA 3HKZD 3GTMC 1TWAC 3PO3C 5C4JC 4Q4ZA 2E2HC 1QRSA 4OIPA 3DLLS 4WFBS 4JK1A 4ZH4A 4QIWD 4A3KC 1YNJA 4E8BA 3X1LB 2B63C 2O5JA 2CX8A 3GTLC 4BBRC 5HL7S 1I50C 1GTRA 2HZ7A 4IOCS 3W2WB 2KXYA 4U67S 4C3IC 4YFKA 3W2VB 5GAEW 3HOZC 5HQHA 1QRUA 2AE0X 2EGVA 5GAGW 3CF5S 2O5IA 4A3BC 1SFOC 3GTKC 4BY7C 1UDXA 4A3LC 2NVXC 3CZBA 4H3SA 1HQMA 1EXDA 4JXXA 4UY88 3GTOC 2JA8C 4Y7NC 1R9TC 3HOVC 4LLGA 1I3QC 2ZJRS 5JVGS 4C2MC 1EUQA 2A6HA 3FKIC 4XLNA 2GAEA 3M3YC 3I4NC 3S15C 4GZYA 3GTGC 4A3CC 4KN4A 3S1QC 5JVHS 2Y0SD 5TMCA 4JYZA 2PI8A 4BXXC 3J7ZV 3S1MC 4WCES 4YG2A 2RE8A 2RD2A 5IYCC 4LK0A 3GTPC 1NXZA 4A3FC 5C3EC 1GTSA 1ZYRA 4QJVA 1DFUP 1QTQA 4XLPA 4L69A 3PIPS 4WF9S 3HOXC 3HOUC 4OIRA 4XSZA 3RZOC 1O0BA 2KPUA 4H4KA 4G7ZA 4MEXA 2A69A 5IP9C 4BBSC 4A3DC 4C3JC 2VUMC 3S16C 3S1RC 4MQ9A 3LYWA 2JA7C 4A3GC 2E2JC 5C44C 3K7AC 4KMUA 4A3MC 5IYBC 2NVQC 2PICA 5D4DA 3I4MC 2CW0A 3H0GC 2PPBA 4A3IC 2EGWA 2WAQD 4KN7A 1Y1WC 2Z0YA 4P2BA 3S14C 5GAHW 2R93C 3HOWC 1IW7A 3GTQC 4YFNA 1K83C 2A68A 4OIQA 4IO9S 4X6AC 5FLMC 3S17C 5GADW 1NYLA 1Y1VC 1SMYA 2L3UA 4WFAS 3CQZC 2R92C 1D6KA 2G6GA 3S2DC 2G5DA 2ZJQS 2NVYC 5IYDC 4WFNS 3S2HC 1VHYA 4BY1C 2PNWA 2JA5C 4NOIA 4C3HC 1I6VA 3KW2A 3H3VD 2PJJA 3PO2C 1ZJWA 2A6EA 2WB1D 5C4XC 4LK1A 1EUYA 1TWCC 4A93C 4IOAS 1TWHC 2PA8D 1TWFC 2KQ1A 1O0CA 3HOYC 3PIOS 1B75A 1QRTA 2NWAA 4AYBD 2PMZD 4JXZA 3DXJA 4A3EC 5IP7C 3AIIA 4Q5SA 5IZNA 5DM6S 5TMFA 1V6ZA 5BNZA 3M4OC 1FEUA 1I6HC 2E2IC 1VHKA 3EQLA 3GTJC 4A3JC 3RZDC 3S1NC 4V194 1WCMC 4OINA 2NVTC 2JA6C 2R7ZC 4OIOA 4G7OA 2L5NA 4XSXA 4MEYA 2YU9C 2BE5A 1TWGC 1YNNA
chains in the Genus database with same CATH topology
5DM7S 4JXXA 2ZJPS 4UY88 1ZJWA 2ZJRS 5JVGS 1EUQA 1EUYA 4IOAS 1QRSA 3DLLS 4WFBS 5JVHS 4JYZA 1O0CA 3PIOS 3J7ZV 4WCES 1B75A 1QRTA 2RE8A 2RD2A 3X1LB 4P2BA 4JXZA 5GAHW 3AIIA 5HL7S 5IZNA 5DM6S 1GTSA 5BNZA 1GTRA 1DFUP 1QTQA 1FEUA 2HZ7A 4IOCS 3PIPS 4WF9S 3W2WB 4V194 4U67S 4IO9S 5GAEW 3W2VB 5GADW 1NYLA 1O0BA 1QRUA 4H4KA 4WFAS 5GAGW 1D6KA 3CF5S 2ZJQS 4WFNS 1UDXA 4H3SA 1EXDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DM7 S;  4JXX A;  2ZJP S;  4UY8 8;  1ZJW A;  2ZJR S;  5JVG S;  1EUQ A;  1EUY A;  4IOA S;  1QRS A;  3DLL S;  4WFB S;  5JVH S;  4JYZ A;  1O0C A;  3PIO S;  3J7Z V;  4WCE S;  1B75 A;  1QRT A;  2RE8 A;  2RD2 A;  4P2B A;  4JXZ A;  5GAH W;  3AII A;  5HL7 S;  5IZN A;  5DM6 S;  1GTS A;  5BNZ A;  1GTR A;  1DFU P;  1QTQ A;  1FEU A;  2HZ7 A;  4IOC S;  3PIP S;  4WF9 S;  4U67 S;  4IO9 S;  5GAE W;  5GAD W;  1NYL A;  1O0B A;  1QRU A;  4WFA S;  5GAG W;  1D6K A;  3CF5 S;  2ZJQ S;  4WFN S;  4H3S A;  1EXD A; 
#chains in the Genus database with same CATH topology
 4J3C A;  4YFX A;  1BDF A;  5DM7 S;  2ZJP S;  3WOD A;  4Y52 C;  1Z85 A;  4LJZ A;  4G7H A;  3HKZ D;  3GTM C;  1TWA C;  3PO3 C;  5C4J C;  4Q4Z A;  2E2H C;  1QRS A;  4OIP A;  3DLL S;  4WFB S;  4JK1 A;  4ZH4 A;  4QIW D;  4A3K C;  1YNJ A;  4E8B A;  3X1L B;  2B63 C;  2O5J A;  2CX8 A;  3GTL C;  4BBR C;  5HL7 S;  1I50 C;  1GTR A;  2HZ7 A;  4IOC S;  3W2W B;  2KXY A;  4U67 S;  4C3I C;  4YFK A;  3W2V B;  5GAE W;  3HOZ C;  5HQH A;  1QRU A;  2AE0 X;  2EGV A;  5GAG W;  3CF5 S;  2O5I A;  4A3B C;  1SFO C;  3GTK C;  4BY7 C;  1UDX A;  4A3L C;  2NVX C;  3CZB A;  4H3S A;  1HQM A;  1EXD A;  4JXX A;  4UY8 8;  3GTO C;  2JA8 C;  4Y7N C;  1R9T C;  3HOV C;  4LLG A;  1I3Q C;  2ZJR S;  5JVG S;  4C2M C;  1EUQ A;  2A6H A;  3FKI C;  4XLN A;  2GAE A;  3M3Y C;  3I4N C;  3S15 C;  4GZY A;  3GTG C;  4A3C C;  4KN4 A;  3S1Q C;  5JVH S;  2Y0S D;  5TMC A;  4JYZ A;  2PI8 A;  4BXX C;  3J7Z V;  3S1M C;  4WCE S;  4YG2 A;  2RE8 A;  2RD2 A;  5IYC C;  4LK0 A;  3GTP C;  1NXZ A;  4A3F C;  5C3E C;  1GTS A;  1ZYR A;  4QJV A;  1DFU P;  1QTQ A;  4XLP A;  4L69 A;  3PIP S;  4WF9 S;  3HOX C;  3HOU C;  4OIR A;  4XSZ A;  3RZO C;  1O0B A;  2KPU A;  4H4K A;  4G7Z A;  4MEX A;  2A69 A;  5IP9 C;  4BBS C;  4A3D C;  4C3J C;  2VUM C;  3S16 C;  3S1R C;  4MQ9 A;  3LYW A;  2JA7 C;  4A3G C;  2E2J C;  5C44 C;  3K7A C;  4KMU A;  4A3M C;  5IYB C;  2NVQ C;  2PIC A;  5D4D A;  3I4M C;  2CW0 A;  3H0G C;  2PPB A;  4A3I C;  2EGW A;  2WAQ D;  4KN7 A;  1Y1W C;  2Z0Y A;  4P2B A;  3S14 C;  5GAH W;  2R93 C;  3HOW C;  1IW7 A;  3GTQ C;  4YFN A;  1K83 C;  2A68 A;  4OIQ A;  4IO9 S;  4X6A C;  5FLM C;  3S17 C;  5GAD W;  1NYL A;  1Y1V C;  1SMY A;  2L3U A;  4WFA S;  3CQZ C;  2R92 C;  1D6K A;  2G6G A;  3S2D C;  2G5D A;  2ZJQ S;  2NVY C;  5IYD C;  4WFN S;  3S2H C;  1VHY A;  4BY1 C;  2PNW A;  2JA5 C;  4NOI A;  4C3H C;  1I6V A;  3KW2 A;  3H3V D;  2PJJ A;  3PO2 C;  1ZJW A;  2A6E A;  2WB1 D;  5C4X C;  4LK1 A;  1EUY A;  1TWC C;  4A93 C;  4IOA S;  1TWH C;  2PA8 D;  1TWF C;  2KQ1 A;  1O0C A;  3HOY C;  3PIO S;  1B75 A;  1QRT A;  2NWA A;  4AYB D;  2PMZ D;  4JXZ A;  3DXJ A;  4A3E C;  5IP7 C;  3AII A;  4Q5S A;  5IZN A;  5DM6 S;  5TMF A;  1V6Z A;  5BNZ A;  3M4O C;  1FEU A;  1I6H C;  2E2I C;  1VHK A;  3EQL A;  3GTJ C;  4A3J C;  3RZD C;  3S1N C;  4V19 4;  1WCM C;  4OIN A;  2NVT C;  2JA6 C;  2R7Z C;  4OIO A;  4G7O A;  2L5N A;  4XSX A;  4MEY A;  2YU9 C;  2BE5 A;  1TWG C;  1YNN A; 
#chains in the Genus database with same CATH homology
 5DM7 S;  4JXX A;  2ZJP S;  4UY8 8;  1ZJW A;  2ZJR S;  5JVG S;  1EUQ A;  1EUY A;  4IOA S;  1QRS A;  3DLL S;  4WFB S;  5JVH S;  4JYZ A;  1O0C A;  3PIO S;  3J7Z V;  4WCE S;  1B75 A;  1QRT A;  2RE8 A;  2RD2 A;  3X1L B;  4P2B A;  4JXZ A;  5GAH W;  3AII A;  5HL7 S;  5IZN A;  5DM6 S;  1GTS A;  5BNZ A;  1GTR A;  1DFU P;  1QTQ A;  1FEU A;  2HZ7 A;  4IOC S;  3PIP S;  4WF9 S;  3W2W B;  4V19 4;  4U67 S;  4IO9 S;  5GAE W;  3W2V B;  5GAD W;  1NYL A;  1O0B A;  1QRU A;  4H4K A;  4WFA S;  5GAG W;  1D6K A;  3CF5 S;  2ZJQ S;  4WFN S;  1UDX A;  4H3S A;  1EXD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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