4WFBS

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with bc-3205
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
167
structure length
157
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPNINDSLTVADVKVTGDFKIEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S rRNA
total genus 17
structure length 157
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wfbS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wfbS02
4P2BA 2ZJQS 3AIIA 1EXDA 1ZJWA 1QRSA 2RE8A 3DLLS 4JYZA 4WFNS 4IOCS 1O0CA 5IZNA 2RD2A 2ZJPS 5GAEW 5DM7S 1QTQA 4WF9S 3J7ZV 4U67S 1QRTA 4H3SA 5GAHW 3CF5S 4UY88 5JVHS 1DFUP 5HL7S 4JXXA 1D6KA 5JVGS 1EUYA 2HZ7A 1EUQA 4JXZA 1O0BA 4WFBS 1GTRA 1B75A 4IOAS 1GTSA 4WCES 5GAGW 2ZJRS 1NYLA 5BNZA 5DM6S 5GADW 3PIPS 1QRUA 1FEUA 3PIOS 4WFAS 4IO9S
chains in the Genus database with same CATH superfamily
4A3LC 4G7OA 4P2BA 3HOXC 3AIIA 1EXDA 1ZJWA 3HOYC 5C3EC 3GTOC 2RE8A 1VHYA 5HQHA 2E2JC 2R92C 2NVTC 5IZNA 1WCMC 3S15C 3EQLA 2CW0A 4Y7NC 3GTGC 2PJJA 3S2HC 4H3SA 1TWCC 1DFUP 5D4DA 3PO2C 1TWHC 5IYCC 5TMFA 5C4JC 3S16C 1D6KA 4XSXA 4Y52C 2HZ7A 3H0GC 3FKIC 4OIOA 1O0BA 2WB1D 3HKZD 1GTRA 1ZYRA 2KPUA 1B75A 4Q4ZA 2KXYA 4OIRA 5IP9C 2VUMC 4YG2A 5BNZA 3H3VD 1FEUA 4MEXA 1K83C 4WFAS 4OIQA 2L3UA 4QJVA 2JA6C 4KN4A 3GTQC 2CX8A 1QRSA 4A3DC 4BBSC 1Y1WC 2NVYC 3HOVC 4IOCS 5IP7C 3DXJA 2A6HA 4YFKA 2ZJPS 1R9TC 5FLMC 1I50C 2YU9C 4WF9S 4U67S 3S14C 3CF5S 2PICA 2G5DA 3CZBA 4JXXA 3I4MC 5IYBC 2NVQC 2E2HC 2R7ZC 1EUQA 1VHKA 2AE0X 3HOWC 2PI8A 1TWAC 4G7HA 4YFNA 3W2VB 3S2DC 3X1LB 4J3CA 3RZOC 4IOAS 1GTSA 3GTPC 2BE5A 2G6GA 2GAEA 1HQMA 3M4OC 4A3GC 4JK1A 2KQ1A 4A3BC 3GTLC 1UDXA 3PO3C 1I6VA 3HOUC 3HOZC 1Z85A 1YNNA 4XSZA 2A6EA 4E8BA 4A3MC 2O5IA 3DLLS 3GTMC 4A3FC 4LLGA 2EGWA 4LK1A 1O0CA 1QTQA 5DM7S 4ZH4A 4LK0A 4KMUA 3J7ZV 4GZYA 5GAHW 2A69A 2Z0YA 4UY88 4XLPA 4A3JC 4A3IC 4OINA 4XLNA 3W2WB 4C3HC 3S1RC 3GTJC 3S1QC 4A3CC 4H4KA 3CQZC 1TWFC 2JA5C 3WODA 1I3QC 2PNWA 4A93C 3K7AC 4G7ZA 5GAGW 1SMYA 5DM6S 4YFXA 1V6ZA 4X6AC 4BBRC 5GADW 4MEYA 2EGVA 4BY1C 2JA8C 2Y0SD 1QRTA 4MQ9A 4C3JC 2R93C 2PA8D 3M3YC 3I4NC 2ZJQS 1BDFA 4C2MC 4NOIA 2E2IC 1TWGC 1IW7A 2A68A 2PMZD 4AYBD 4QIWD 4C3IC 5IYDC 2PPBA 1NXZA 4JYZA 4WFNS 3RZDC 3S17C 1I6HC 5C44C 2RD2A 3GTKC 5GAEW 1YNJA 2NWAA 2B63C 5JVHS 2JA7C 1Y1VC 5HL7S 4BY7C 2WAQD 4OIPA 5JVGS 1EUYA 3LYWA 3S1MC 4LJZA 2L5NA 3S1NC 5TMCA 4L69A 4Q5SA 4JXZA 5C4XC 4WFBS 4KN7A 4WCES 2ZJRS 4A3EC 1NYLA 2NVXC 3KW2A 4A3KC 3PIPS 1QRUA 3PIOS 1SFOC 2O5JA 4V194 4IO9S 4BXXC
chains in the Genus database with same CATH topology
4P2BA 1UDXA 2ZJQS 3AIIA 1EXDA 1ZJWA 1QRSA 2RE8A 3DLLS 4JYZA 4WFNS 4IOCS 1O0CA 5IZNA 2RD2A 2ZJPS 5GAEW 5DM7S 1QTQA 4WF9S 3J7ZV 4U67S 1QRTA 4H3SA 5GAHW 3CF5S 4UY88 5JVHS 1DFUP 5HL7S 3W2WB 4JXXA 1D6KA 4H4KA 5JVGS 1EUYA 2HZ7A 1EUQA 4JXZA 1O0BA 3W2VB 4WFBS 1GTRA 3X1LB 1B75A 4IOAS 1GTSA 4WCES 5GAGW 2ZJRS 1NYLA 5BNZA 5DM6S 5GADW 3PIPS 1QRUA 1FEUA 3PIOS 4WFAS 4V194 4IO9S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P2B A;  2ZJQ S;  3AII A;  1EXD A;  1ZJW A;  1QRS A;  2RE8 A;  3DLL S;  4JYZ A;  4WFN S;  4IOC S;  1O0C A;  5IZN A;  2RD2 A;  2ZJP S;  5GAE W;  5DM7 S;  1QTQ A;  4WF9 S;  3J7Z V;  4U67 S;  1QRT A;  4H3S A;  5GAH W;  3CF5 S;  4UY8 8;  5JVH S;  1DFU P;  5HL7 S;  4JXX A;  1D6K A;  5JVG S;  1EUY A;  2HZ7 A;  1EUQ A;  4JXZ A;  1O0B A;  4WFB S;  1GTR A;  1B75 A;  4IOA S;  1GTS A;  4WCE S;  5GAG W;  2ZJR S;  1NYL A;  5BNZ A;  5DM6 S;  5GAD W;  3PIP S;  1QRU A;  1FEU A;  3PIO S;  4WFA S;  4IO9 S; 
#chains in the Genus database with same CATH topology
 4A3L C;  4G7O A;  4P2B A;  3HOX C;  3AII A;  1EXD A;  1ZJW A;  3HOY C;  5C3E C;  3GTO C;  2RE8 A;  1VHY A;  5HQH A;  2E2J C;  2R92 C;  2NVT C;  5IZN A;  1WCM C;  3S15 C;  3EQL A;  2CW0 A;  4Y7N C;  3GTG C;  2PJJ A;  3S2H C;  4H3S A;  1TWC C;  1DFU P;  5D4D A;  3PO2 C;  1TWH C;  5IYC C;  5TMF A;  5C4J C;  3S16 C;  1D6K A;  4XSX A;  4Y52 C;  2HZ7 A;  3H0G C;  3FKI C;  4OIO A;  1O0B A;  2WB1 D;  3HKZ D;  1GTR A;  1ZYR A;  2KPU A;  1B75 A;  4Q4Z A;  2KXY A;  4OIR A;  5IP9 C;  2VUM C;  4YG2 A;  5BNZ A;  3H3V D;  1FEU A;  4MEX A;  1K83 C;  4WFA S;  4OIQ A;  2L3U A;  4QJV A;  2JA6 C;  4KN4 A;  3GTQ C;  2CX8 A;  1QRS A;  4A3D C;  4BBS C;  1Y1W C;  2NVY C;  3HOV C;  4IOC S;  5IP7 C;  3DXJ A;  2A6H A;  4YFK A;  2ZJP S;  1R9T C;  5FLM C;  1I50 C;  2YU9 C;  4WF9 S;  4U67 S;  3S14 C;  3CF5 S;  2PIC A;  2G5D A;  3CZB A;  4JXX A;  3I4M C;  5IYB C;  2NVQ C;  2E2H C;  2R7Z C;  1EUQ A;  1VHK A;  2AE0 X;  3HOW C;  2PI8 A;  1TWA C;  4G7H A;  4YFN A;  3W2V B;  3S2D C;  3X1L B;  4J3C A;  3RZO C;  4IOA S;  1GTS A;  3GTP C;  2BE5 A;  2G6G A;  2GAE A;  1HQM A;  3M4O C;  4A3G C;  4JK1 A;  2KQ1 A;  4A3B C;  3GTL C;  1UDX A;  3PO3 C;  1I6V A;  3HOU C;  3HOZ C;  1Z85 A;  1YNN A;  4XSZ A;  2A6E A;  4E8B A;  4A3M C;  2O5I A;  3DLL S;  3GTM C;  4A3F C;  4LLG A;  2EGW A;  4LK1 A;  1O0C A;  1QTQ A;  5DM7 S;  4ZH4 A;  4LK0 A;  4KMU A;  3J7Z V;  4GZY A;  5GAH W;  2A69 A;  2Z0Y A;  4UY8 8;  4XLP A;  4A3J C;  4A3I C;  4OIN A;  4XLN A;  3W2W B;  4C3H C;  3S1R C;  3GTJ C;  3S1Q C;  4A3C C;  4H4K A;  3CQZ C;  1TWF C;  2JA5 C;  3WOD A;  1I3Q C;  2PNW A;  4A93 C;  3K7A C;  4G7Z A;  5GAG W;  1SMY A;  5DM6 S;  4YFX A;  1V6Z A;  4X6A C;  4BBR C;  5GAD W;  4MEY A;  2EGV A;  4BY1 C;  2JA8 C;  2Y0S D;  1QRT A;  4MQ9 A;  4C3J C;  2R93 C;  2PA8 D;  3M3Y C;  3I4N C;  2ZJQ S;  1BDF A;  4C2M C;  4NOI A;  2E2I C;  1TWG C;  1IW7 A;  2A68 A;  2PMZ D;  4AYB D;  4QIW D;  4C3I C;  5IYD C;  2PPB A;  1NXZ A;  4JYZ A;  4WFN S;  3RZD C;  3S17 C;  1I6H C;  5C44 C;  2RD2 A;  3GTK C;  5GAE W;  1YNJ A;  2NWA A;  2B63 C;  5JVH S;  2JA7 C;  1Y1V C;  5HL7 S;  4BY7 C;  2WAQ D;  4OIP A;  5JVG S;  1EUY A;  3LYW A;  3S1M C;  4LJZ A;  2L5N A;  3S1N C;  5TMC A;  4L69 A;  4Q5S A;  4JXZ A;  5C4X C;  4WFB S;  4KN7 A;  4WCE S;  2ZJR S;  4A3E C;  1NYL A;  2NVX C;  3KW2 A;  4A3K C;  3PIP S;  1QRU A;  3PIO S;  1SFO C;  2O5J A;  4V19 4;  4IO9 S;  4BXX C; 
#chains in the Genus database with same CATH homology
 4P2B A;  1UDX A;  2ZJQ S;  3AII A;  1EXD A;  1ZJW A;  1QRS A;  2RE8 A;  3DLL S;  4JYZ A;  4WFN S;  4IOC S;  1O0C A;  5IZN A;  2RD2 A;  2ZJP S;  5GAE W;  5DM7 S;  1QTQ A;  4WF9 S;  3J7Z V;  4U67 S;  1QRT A;  4H3S A;  5GAH W;  3CF5 S;  4UY8 8;  5JVH S;  1DFU P;  5HL7 S;  3W2W B;  4JXX A;  1D6K A;  4H4K A;  5JVG S;  1EUY A;  2HZ7 A;  1EUQ A;  4JXZ A;  1O0B A;  3W2V B;  4WFB S;  1GTR A;  3X1L B;  1B75 A;  4IOA S;  1GTS A;  4WCE S;  5GAG W;  2ZJR S;  1NYL A;  5BNZ A;  5DM6 S;  5GAD W;  3PIP S;  1QRU A;  1FEU A;  3PIO S;  4WFA S;  4V19 4;  4IO9 S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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