4WFBS

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with bc-3205
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
167
structure length
157
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPNINDSLTVADVKVTGDFKIEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S rRNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
total genus 17
structure length 157
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wfbS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wfbS02
4WFNS 1O0CA 1EUQA 4P2BA 1QRTA 2HZ7A 4IO9S 1B75A 1DFUP 2ZJQS 4JXZA 4WCES 3DLLS 5JVHS 1EUYA 5DM6S 1NYLA 5IZNA 1GTRA 4U67S 2RE8A 3AIIA 5GAEW 5GAGW 5BNZA 4IOCS 5GADW 1QRUA 4IOAS 1FEUA 1ZJWA 1QTQA 1QRSA 3J7ZV 1GTSA 4WFBS 4WFAS 2ZJRS 5DM7S 3CF5S 5JVGS 4JYZA 2RD2A 4JXXA 1D6KA 4WF9S 4UY88 1O0BA 1EXDA 2ZJPS 3PIOS 5HL7S 3PIPS 4H3SA 5GAHW
chains in the Genus database with same CATH superfamily
5TMCA 4GZYA 1I6VA 4A3MC 2A6EA 1QRTA 4YG2A 4C3HC 3GTJC 4IO9S 4OIOA 2PMZD 4JK1A 2AE0X 2EGWA 1BDFA 2KQ1A 5C4JC 4WCES 2R93C 3S2HC 1VHKA 3DLLS 5JVHS 4C3JC 5IP7C 3M4OC 5IZNA 4H4KA 4XSXA 2RE8A 3S1QC 4QIWD 5TMFA 2WB1D 1QRUA 1FEUA 3GTPC 1VHYA 1QRSA 3CQZC 4BY1C 1V6ZA 3HOXC 4YFNA 3GTMC 2ZJRS 3S1MC 5HQHA 3S14C 5DM7S 3X1LB 1WCMC 2EGVA 2JA8C 4X6AC 1YNJA 3HOYC 4WF9S 4A3JC 3HOZC 2KXYA 1I6HC 1TWHC 4XLPA 4A3DC 2CW0A 2A68A 4LLGA 4BY7C 3S1NC 1O0BA 3PIPS 4H3SA 5GAHW 4WFNS 5IYCC 1EUQA 4P2BA 4G7OA 2YU9C 4Q4ZA 2PPBA 2G5DA 3S16C 2R7ZC 4Y7NC 2PJJA 2PI8A 2E2HC 4V194 1I3QC 4MEYA 4XLNA 4Y52C 4J3CA 2JA5C 4U67S 3AIIA 4LJZA 5GAGW 5BNZA 3PO3C 3S2DC 3J7ZV 2CX8A 2PA8D 4WFAS 1IW7A 4A93C 1YNNA 3CF5S 4QJVA 3KW2A 4JXXA 3W2WB 4UY88 4XSZA 2JA7C 1EXDA 2ZJPS 3PIOS 3PO2C 2WAQD 1TWFC 2A69A 4MQ9A 4BBRC 3RZOC 3GTKC 2R92C 5HL7S 2HZ7A 3M3YC 4BXXC 1I50C 1Y1WC 4LK0A 4ZH4A 4A3CC 3HKZD 2NVXC 4YFXA 5FLMC 4A3KC 1TWAC 4JXZA 4KN4A 3GTLC 4OIPA 4L69A 2B63C 3CZBA 2O5IA 4E8BA 4C2MC 5DM6S 1SFOC 1GTRA 2E2IC 2NVYC 5GAEW 2KPUA 2JA6C 4A3LC 5D4DA 4A3GC 4IOAS 3LYWA 3EQLA 3I4NC 1K83C 3FKIC 4A3IC 3GTOC 4Q5SA 1GTSA 4WFBS 4OIRA 2Z0YA 4KMUA 1TWCC 3S1RC 2NVTC 2L5NA 4MEXA 2NWAA 3S15C 4JYZA 2G6GA 3K7AC 3WODA 1NXZA 3H0GC 2A6HA 3HOUC 5IYBC 4A3BC 1Y1VC 3HOVC 4NOIA 1O0CA 4C3IC 5C44C 4YFKA 2Y0SD 2VUMC 5C3EC 3S17C 5IP9C 4BBSC 5IYDC 5C4XC 2GAEA 3DXJA 1B75A 3H3VD 4A3EC 1DFUP 2ZJQS 2E2JC 1Z85A 4LK1A 2BE5A 4OINA 3GTGC 3GTQC 1EUYA 1NYLA 1UDXA 1TWGC 4G7HA 2NVQC 2O5JA 2PICA 1SMYA 4IOCS 5GADW 1ZJWA 1ZYRA 4AYBD 4KN7A 3RZDC 5JVGS 2PNWA 3HOWC 1D6KA 1HQMA 2L3UA 3W2VB 4G7ZA 4OIQA 1R9TC 1QTQA 4A3FC 2RD2A 3I4MC
chains in the Genus database with same CATH topology
4WFNS 1O0CA 1EUQA 4P2BA 1QRTA 2HZ7A 4IO9S 4V194 1B75A 1DFUP 2ZJQS 4JXZA 4WCES 3DLLS 5JVHS 1EUYA 5DM6S 1NYLA 1UDXA 5IZNA 4H4KA 1GTRA 4U67S 2RE8A 3AIIA 5GAEW 5GAGW 5BNZA 4IOCS 5GADW 1QRUA 4IOAS 1FEUA 1ZJWA 1QTQA 1QRSA 3J7ZV 1GTSA 4WFBS 4WFAS 2ZJRS 5DM7S 3CF5S 3X1LB 5JVGS 4JYZA 2RD2A 3W2WB 4JXXA 1D6KA 4WF9S 4UY88 1O0BA 3W2VB 2ZJPS 1EXDA 3PIOS 5HL7S 3PIPS 4H3SA 5GAHW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFN S;  1O0C A;  1EUQ A;  4P2B A;  1QRT A;  2HZ7 A;  4IO9 S;  1B75 A;  1DFU P;  2ZJQ S;  4JXZ A;  4WCE S;  3DLL S;  5JVH S;  1EUY A;  5DM6 S;  1NYL A;  5IZN A;  1GTR A;  4U67 S;  2RE8 A;  3AII A;  5GAE W;  5GAG W;  5BNZ A;  4IOC S;  5GAD W;  1QRU A;  4IOA S;  1FEU A;  1ZJW A;  1QTQ A;  1QRS A;  3J7Z V;  1GTS A;  4WFB S;  4WFA S;  2ZJR S;  5DM7 S;  3CF5 S;  5JVG S;  4JYZ A;  2RD2 A;  4JXX A;  1D6K A;  4WF9 S;  4UY8 8;  1O0B A;  1EXD A;  2ZJP S;  3PIO S;  5HL7 S;  3PIP S;  4H3S A;  5GAH W; 
#chains in the Genus database with same CATH topology
 5TMC A;  4GZY A;  1I6V A;  4A3M C;  2A6E A;  1QRT A;  4YG2 A;  4C3H C;  3GTJ C;  4IO9 S;  4OIO A;  2PMZ D;  4JK1 A;  2AE0 X;  2EGW A;  1BDF A;  2KQ1 A;  5C4J C;  4WCE S;  2R93 C;  3S2H C;  1VHK A;  3DLL S;  5JVH S;  4C3J C;  5IP7 C;  3M4O C;  5IZN A;  4H4K A;  4XSX A;  2RE8 A;  3S1Q C;  4QIW D;  5TMF A;  2WB1 D;  1QRU A;  1FEU A;  3GTP C;  1VHY A;  1QRS A;  3CQZ C;  4BY1 C;  1V6Z A;  3HOX C;  4YFN A;  3GTM C;  2ZJR S;  3S1M C;  5HQH A;  3S14 C;  5DM7 S;  3X1L B;  1WCM C;  2EGV A;  2JA8 C;  4X6A C;  1YNJ A;  3HOY C;  4WF9 S;  4A3J C;  3HOZ C;  2KXY A;  1I6H C;  1TWH C;  4XLP A;  4A3D C;  2CW0 A;  2A68 A;  4LLG A;  4BY7 C;  3S1N C;  1O0B A;  3PIP S;  4H3S A;  5GAH W;  4WFN S;  5IYC C;  1EUQ A;  4P2B A;  4G7O A;  2YU9 C;  4Q4Z A;  2PPB A;  2G5D A;  3S16 C;  2R7Z C;  4Y7N C;  2PJJ A;  2PI8 A;  2E2H C;  4V19 4;  1I3Q C;  4MEY A;  4XLN A;  4Y52 C;  4J3C A;  2JA5 C;  4U67 S;  3AII A;  4LJZ A;  5GAG W;  5BNZ A;  3PO3 C;  3S2D C;  3J7Z V;  2CX8 A;  2PA8 D;  4WFA S;  1IW7 A;  4A93 C;  1YNN A;  3CF5 S;  4QJV A;  3KW2 A;  4JXX A;  3W2W B;  4UY8 8;  4XSZ A;  2JA7 C;  1EXD A;  2ZJP S;  3PIO S;  3PO2 C;  2WAQ D;  1TWF C;  2A69 A;  4MQ9 A;  4BBR C;  3RZO C;  3GTK C;  2R92 C;  5HL7 S;  2HZ7 A;  3M3Y C;  4BXX C;  1I50 C;  1Y1W C;  4LK0 A;  4ZH4 A;  4A3C C;  3HKZ D;  2NVX C;  4YFX A;  5FLM C;  4A3K C;  1TWA C;  4JXZ A;  4KN4 A;  3GTL C;  4OIP A;  4L69 A;  2B63 C;  3CZB A;  2O5I A;  4E8B A;  4C2M C;  5DM6 S;  1SFO C;  1GTR A;  2E2I C;  2NVY C;  5GAE W;  2KPU A;  2JA6 C;  4A3L C;  5D4D A;  4A3G C;  4IOA S;  3LYW A;  3EQL A;  3I4N C;  1K83 C;  3FKI C;  4A3I C;  3GTO C;  4Q5S A;  1GTS A;  4WFB S;  4OIR A;  2Z0Y A;  4KMU A;  1TWC C;  3S1R C;  2NVT C;  2L5N A;  4MEX A;  2NWA A;  3S15 C;  4JYZ A;  2G6G A;  3K7A C;  3WOD A;  1NXZ A;  3H0G C;  2A6H A;  3HOU C;  5IYB C;  4A3B C;  1Y1V C;  3HOV C;  4NOI A;  1O0C A;  4C3I C;  5C44 C;  4YFK A;  2Y0S D;  2VUM C;  5C3E C;  3S17 C;  5IP9 C;  4BBS C;  5IYD C;  5C4X C;  2GAE A;  3DXJ A;  1B75 A;  3H3V D;  4A3E C;  1DFU P;  2ZJQ S;  2E2J C;  1Z85 A;  4LK1 A;  2BE5 A;  4OIN A;  3GTG C;  3GTQ C;  1EUY A;  1NYL A;  1UDX A;  1TWG C;  4G7H A;  2NVQ C;  2O5J A;  2PIC A;  1SMY A;  4IOC S;  5GAD W;  1ZJW A;  1ZYR A;  4AYB D;  4KN7 A;  3RZD C;  5JVG S;  2PNW A;  3HOW C;  1D6K A;  1HQM A;  2L3U A;  3W2V B;  4G7Z A;  4OIQ A;  1R9T C;  1QTQ A;  4A3F C;  2RD2 A;  3I4M C; 
#chains in the Genus database with same CATH homology
 4WFN S;  1O0C A;  1EUQ A;  4P2B A;  1QRT A;  2HZ7 A;  4IO9 S;  4V19 4;  1B75 A;  1DFU P;  2ZJQ S;  4JXZ A;  4WCE S;  3DLL S;  5JVH S;  1EUY A;  5DM6 S;  1NYL A;  1UDX A;  5IZN A;  4H4K A;  1GTR A;  4U67 S;  2RE8 A;  3AII A;  5GAE W;  5GAG W;  5BNZ A;  4IOC S;  5GAD W;  1QRU A;  4IOA S;  1FEU A;  1ZJW A;  1QTQ A;  1QRS A;  3J7Z V;  1GTS A;  4WFB S;  4WFA S;  2ZJR S;  5DM7 S;  3CF5 S;  3X1L B;  5JVG S;  4JYZ A;  2RD2 A;  3W2W B;  4JXX A;  1D6K A;  4WF9 S;  4UY8 8;  1O0B A;  3W2V B;  2ZJP S;  1EXD A;  3PIO S;  5HL7 S;  3PIP S;  4H3S A;  5GAH W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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