4WFBS

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with bc-3205
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
167
structure length
157
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPNINDSLTVADVKVTGDFKIEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S rRNA
total genus 17
structure length 157
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wfbS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wfbS02
5IZNA 1GTRA 4P2BA 1QRSA 4JYZA 3PIOS 5HL7S 4U67S 5GAGW 3PIPS 3DLLS 3CF5S 5GADW 2RE8A 5JVGS 1D6KA 1GTSA 3J7ZV 3AIIA 1EUQA 4WFNS 1QRUA 1ZJWA 5BNZA 5GAHW 2ZJQS 2ZJRS 1O0BA 5JVHS 1QRTA 4IOAS 1DFUP 1QTQA 4WCES 1O0CA 4UY88 5GAEW 2RD2A 1EUYA 4JXZA 1FEUA 2ZJPS 1B75A 1EXDA 4WF9S 4JXXA 1NYLA 2HZ7A 5DM7S 4H3SA 4IO9S 5DM6S 4WFBS 4IOCS 4WFAS
chains in the Genus database with same CATH superfamily
4A3LC 5C3EC 5C44C 1GTRA 1R9TC 2E2IC 3S14C 3S2DC 3H0GC 4KMUA 5HL7S 4U67S 2PI8A 3PIPS 4YFKA 4YFXA 4MEXA 1ZYRA 4KN7A 4MQ9A 2O5IA 3GTLC 3HOZC 3W2VB 4GZYA 3WODA 2A6EA 2PA8D 5GAHW 4MEYA 4A3BC 5TMFA 1O0BA 1QRTA 4XSZA 1SMYA 1QTQA 4KN4A 2JA6C 3PO2C 2KQ1A 4WCES 4UY88 1I3QC 2L3UA 2WAQD 4ZH4A 3S1QC 2B63C 2Y0SD 1EUYA 4JXZA 3W2WB 1FEUA 1YNNA 4WF9S 4OIPA 2Z0YA 5FLMC 1Y1WC 4JXXA 3HOVC 4C3IC 3S16C 2A68A 4BXXC 1TWGC 3H3VD 3RZDC 1Y1VC 4BBRC 3X1LB 1VHKA 2VUMC 2NVQC 3GTJC 3S1MC 3GTMC 4LK0A 2NWAA 4XLPA 5IYDC 3PIOS 2PNWA 2E2HC 4A3CC 1I6HC 3HOUC 3PO3C 4LK1A 3J7ZV 3AIIA 2NVTC 3HOWC 4A3DC 4LLGA 4AYBD 4WFNS 3CZBA 1QRUA 2JA8C 1ZJWA 4NOIA 2NVXC 3S2HC 4V194 2PPBA 2ZJRS 2EGVA 2BE5A 5JVHS 1I6VA 2GAEA 4L69A 4G7HA 1NXZA 5IP9C 5IP7C 2E2JC 1TWFC 1WCMC 4XSXA 2R93C 4Q4ZA 2JA5C 2R92C 4J3CA 4X6AC 4OIRA 1NYLA 5DM7S 2PMZD 5C4JC 4Y7NC 2EGWA 5DM6S 4IO9S 4LJZA 4BY1C 1K83C 4G7OA 4IOCS 4WFAS 1BDFA 3M4OC 2CX8A 4P2BA 4E8BA 3RZOC 3HOYC 4A3KC 4A3EC 3DLLS 5GAGW 1YNJA 4C3HC 5GADW 2R7ZC 4OIQA 1EUQA 3GTOC 4OIOA 4A3IC 5IYBC 4BY7C 4IOAS 2KPUA 3GTPC 4Y52C 3HKZD 4H4KA 1O0CA 5GAEW 4A3FC 2WB1D 2G5DA 2A6HA 2O5JA 5C4XC 5HQHA 1IW7A 2L5NA 4XLNA 3CQZC 3K7AC 4QJVA 5IYCC 1SFOC 4YFNA 2JA7C 4A93C 1TWCC 1HQMA 4WFBS 3LYWA 3M3YC 5IZNA 1TWAC 3KW2A 1QRSA 2PJJA 4JYZA 2YU9C 4JK1A 3DXJA 3CF5S 4A3MC 2RE8A 5JVGS 1D6KA 1GTSA 4YG2A 3S15C 2AE0X 3GTQC 4Q5SA 4G7ZA 3FKIC 4C3JC 5BNZA 2ZJQS 4C2MC 1DFUP 1VHYA 1V6ZA 2A69A 3S1NC 1I50C 1Z85A 3I4MC 3I4NC 3S1RC 1TWHC 4QIWD 2PICA 1UDXA 2RD2A 1B75A 3S17C 3GTGC 2ZJPS 3EQLA 1EXDA 2KXYA 2G6GA 4BBSC 4A3GC 5TMCA 4OINA 2HZ7A 5D4DA 4H3SA 2CW0A 3HOXC 2NVYC 3GTKC 4A3JC
chains in the Genus database with same CATH topology
5IZNA 1GTRA 4P2BA 1QRSA 4JYZA 3PIOS 5HL7S 4U67S 5GAGW 3PIPS 3DLLS 3CF5S 5GADW 2RE8A 5JVGS 3W2VB 1D6KA 3J7ZV 3AIIA 1GTSA 1EUQA 4WFNS 1QRUA 1ZJWA 5BNZA 5GAHW 2ZJQS 4V194 2ZJRS 1O0BA 5JVHS 1QRTA 4IOAS 1DFUP 1QTQA 4WCES 4H4KA 1O0CA 4UY88 5GAEW 1UDXA 2RD2A 1EUYA 4JXZA 3W2WB 2ZJPS 1FEUA 1EXDA 4WF9S 1B75A 4JXXA 1NYLA 2HZ7A 5DM7S 4H3SA 4IO9S 5DM6S 3X1LB 4WFBS 4IOCS 4WFAS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IZN A;  1GTR A;  4P2B A;  1QRS A;  4JYZ A;  3PIO S;  5HL7 S;  4U67 S;  5GAG W;  3PIP S;  3DLL S;  3CF5 S;  5GAD W;  2RE8 A;  5JVG S;  1D6K A;  1GTS A;  3J7Z V;  3AII A;  1EUQ A;  4WFN S;  1QRU A;  1ZJW A;  5BNZ A;  5GAH W;  2ZJQ S;  2ZJR S;  1O0B A;  5JVH S;  1QRT A;  4IOA S;  1DFU P;  1QTQ A;  4WCE S;  1O0C A;  4UY8 8;  5GAE W;  2RD2 A;  1EUY A;  4JXZ A;  1FEU A;  2ZJP S;  1B75 A;  1EXD A;  4WF9 S;  4JXX A;  1NYL A;  2HZ7 A;  5DM7 S;  4H3S A;  4IO9 S;  5DM6 S;  4WFB S;  4IOC S;  4WFA S; 
#chains in the Genus database with same CATH topology
 4A3L C;  5C3E C;  5C44 C;  1GTR A;  1R9T C;  2E2I C;  3S14 C;  3S2D C;  3H0G C;  4KMU A;  5HL7 S;  4U67 S;  2PI8 A;  3PIP S;  4YFK A;  4YFX A;  4MEX A;  1ZYR A;  4KN7 A;  4MQ9 A;  2O5I A;  3GTL C;  3HOZ C;  3W2V B;  4GZY A;  3WOD A;  2A6E A;  2PA8 D;  5GAH W;  4MEY A;  4A3B C;  5TMF A;  1O0B A;  1QRT A;  4XSZ A;  1SMY A;  1QTQ A;  4KN4 A;  2JA6 C;  3PO2 C;  2KQ1 A;  4WCE S;  4UY8 8;  1I3Q C;  2L3U A;  2WAQ D;  4ZH4 A;  3S1Q C;  2B63 C;  2Y0S D;  1EUY A;  4JXZ A;  3W2W B;  1FEU A;  1YNN A;  4WF9 S;  4OIP A;  2Z0Y A;  5FLM C;  1Y1W C;  4JXX A;  3HOV C;  4C3I C;  3S16 C;  2A68 A;  4BXX C;  1TWG C;  3H3V D;  3RZD C;  1Y1V C;  4BBR C;  3X1L B;  1VHK A;  2VUM C;  2NVQ C;  3GTJ C;  3S1M C;  3GTM C;  4LK0 A;  2NWA A;  4XLP A;  5IYD C;  3PIO S;  2PNW A;  2E2H C;  4A3C C;  1I6H C;  3HOU C;  3PO3 C;  4LK1 A;  3J7Z V;  3AII A;  2NVT C;  3HOW C;  4A3D C;  4LLG A;  4AYB D;  4WFN S;  3CZB A;  1QRU A;  2JA8 C;  1ZJW A;  4NOI A;  2NVX C;  3S2H C;  4V19 4;  2PPB A;  2ZJR S;  2EGV A;  2BE5 A;  5JVH S;  1I6V A;  2GAE A;  4L69 A;  4G7H A;  1NXZ A;  5IP9 C;  5IP7 C;  2E2J C;  1TWF C;  1WCM C;  4XSX A;  2R93 C;  4Q4Z A;  2JA5 C;  2R92 C;  4J3C A;  4X6A C;  4OIR A;  1NYL A;  5DM7 S;  2PMZ D;  5C4J C;  4Y7N C;  2EGW A;  5DM6 S;  4IO9 S;  4LJZ A;  4BY1 C;  1K83 C;  4G7O A;  4IOC S;  4WFA S;  1BDF A;  3M4O C;  2CX8 A;  4P2B A;  4E8B A;  3RZO C;  3HOY C;  4A3K C;  4A3E C;  3DLL S;  5GAG W;  1YNJ A;  4C3H C;  5GAD W;  2R7Z C;  4OIQ A;  1EUQ A;  3GTO C;  4OIO A;  4A3I C;  5IYB C;  4BY7 C;  4IOA S;  2KPU A;  3GTP C;  4Y52 C;  3HKZ D;  4H4K A;  1O0C A;  5GAE W;  4A3F C;  2WB1 D;  2G5D A;  2A6H A;  2O5J A;  5C4X C;  5HQH A;  1IW7 A;  2L5N A;  4XLN A;  3CQZ C;  3K7A C;  4QJV A;  5IYC C;  1SFO C;  4YFN A;  2JA7 C;  4A93 C;  1TWC C;  1HQM A;  4WFB S;  3LYW A;  3M3Y C;  5IZN A;  1TWA C;  3KW2 A;  1QRS A;  2PJJ A;  4JYZ A;  2YU9 C;  4JK1 A;  3DXJ A;  3CF5 S;  4A3M C;  2RE8 A;  5JVG S;  1D6K A;  1GTS A;  4YG2 A;  3S15 C;  2AE0 X;  3GTQ C;  4Q5S A;  4G7Z A;  3FKI C;  4C3J C;  5BNZ A;  2ZJQ S;  4C2M C;  1DFU P;  1VHY A;  1V6Z A;  2A69 A;  3S1N C;  1I50 C;  1Z85 A;  3I4M C;  3I4N C;  3S1R C;  1TWH C;  4QIW D;  2PIC A;  1UDX A;  2RD2 A;  1B75 A;  3S17 C;  3GTG C;  2ZJP S;  3EQL A;  1EXD A;  2KXY A;  2G6G A;  4BBS C;  4A3G C;  5TMC A;  4OIN A;  2HZ7 A;  5D4D A;  4H3S A;  2CW0 A;  3HOX C;  2NVY C;  3GTK C;  4A3J C; 
#chains in the Genus database with same CATH homology
 5IZN A;  1GTR A;  4P2B A;  1QRS A;  4JYZ A;  3PIO S;  5HL7 S;  4U67 S;  5GAG W;  3PIP S;  3DLL S;  3CF5 S;  5GAD W;  2RE8 A;  5JVG S;  3W2V B;  1D6K A;  3J7Z V;  3AII A;  1GTS A;  1EUQ A;  4WFN S;  1QRU A;  1ZJW A;  5BNZ A;  5GAH W;  2ZJQ S;  4V19 4;  2ZJR S;  1O0B A;  5JVH S;  1QRT A;  4IOA S;  1DFU P;  1QTQ A;  4WCE S;  4H4K A;  1O0C A;  4UY8 8;  5GAE W;  1UDX A;  2RD2 A;  1EUY A;  4JXZ A;  3W2W B;  2ZJP S;  1FEU A;  1EXD A;  4WF9 S;  1B75 A;  4JXX A;  1NYL A;  2HZ7 A;  5DM7 S;  4H3S A;  4IO9 S;  5DM6 S;  3X1L B;  4WFB S;  4IOC S;  4WFA S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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