4WFN1

Crystal structure of the large ribosomal subunit (50s) of deinococcus radiodurans containing a three residue insertion in l22 in complex with erythromycin
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
53
structure length
53
Chain Sequence
AKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2
publication title The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel.
pubmed doi rcsb
total genus 2
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2014-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00471 Ribosomal_L33 Ribosomal protein L33
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.120 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 4wfn100
3PIP1 5DM61 3J7Z1 3PIO1 5GAEc 3J7Y1 5GAGc 5GADc 5JVG1 4UY81 5MLC3 5GAHc 5JVH1 5DM71 4U671 4V196 4WFN1 5H1Sc
chains in the Genus database with same CATH superfamily
3CQZL 4A3LL 5DM71 2RFKB 4TPUA 1RDGA 1VZGA 4V196 1PFWA 5IYDL 1R0IA 3K7AL 5MF6A 4AHYA 5M5XL 2JA7L 3RYGA 3S1ML 3VPBE 3PIP1 2K2DA 5C4JL 5EIOC 1B2JA 5M3ML 3LWPB 1TWAL 1YV1A 5C4XL 3FDJA 1I3QL 2E2HL 2PVEA 1YUZA 2WB1P 7RXNA 1S24A 2KN9A 1ZRPA 3GTKL 2JA6L 1OWCA 1PFVA 1WJVA 2APOB 1RYQA 4BY1L 2AYJA 2ERSA 3S14L 3J7Z1 5IYCL 3H9CA 2CKAA 5IP7L 4RXNA 3WWNB 4AR4A 3HOVL 1LTLA 3S17L 4AHZA 4A3EL 4BY7L 1SMUA 1S30A 1FHMA 1FHHA 1VZIA 3ZG6A 3RZOL 1SMWA 3HAXC 2XJUA 4ZN1B 5C44L 4A3ML 1RB9A 4JADA 1NXEA 3H97A 1SMMA 3H99A 2XJPA 5GAEc 4YWLA 1BRFA 2R92L 1CADA 2PSMC 1T9QA 2NVXL 4POGA 2XJQA 2KKDA 4X6AL 4C3HL 1YUXA 3MPSA 4U671 2E2IL 1F4LA 2EY4E 3PWFA 4A3BL 1PZXA 5AN9H 2XJRA 1R0HA 3B0AB 6RXNA 2Z3QB 1Z92B 4QIWP 4JAFA 4GS7D 2Y0SP 3MSUA 4YWMA 1QQTA 3PKIA 1R0FA 1Y1VL 2NVQL 3QQCE 4A3FL 2JI1A 4C2M1 1JYBA 3SS2A 1IU6A 4WFN1 4A3DL 1T9PA 4AI2A 2GMGA 2MS3A 2H12A 3HOWL 4A3CL 4BBRL 3HOYL 5MLC3 2E2JL 5C3EL 3LWVB 4BXXL 3HOUL 2M4VA 3KYXA 5M5YL 5M5WL 2B63L 1B13A 1C09A 3J7Y1 3PO2L 1P7PA 3LWOB 4AHWA 3B08B 3HOZL 1B71A 5H1Sc 2V3BB 4B8CD 2A69D 5IP9L 3HJWB 1RDVA 3LNLA 4AYBP 4A3IL 1I6HL 1I50L 2V0FA 3RZTA 4XXBB 3LPEB 3PZAA 1E8JA 4K9FA 4UY81 3P2AA 1Y1WL 3H9BA 3S1NL 2JA8L 5DM61 2AQCA 4AR6A 2A6HD 4Y52L 4LHNA 3PL5A 4ZN3B 3S16L 4Y7NL 5FJ8L 3H3VM 3GTOL 4AR5A 1OWBA 1LKPA 1RWDA 1YK4A 2XJSA 3S2HL 1QYBA 3M4OL 1NXGA 3KYUA 1R0GA 2R7ZL 3S2DL 2PPTA 1WCML 2DSXA 3HOXL 3LWRB 3S1QL 4A3JL 4BBSL 1LKOA 4C3IL 4AI0A 2QL0A 2JI2A 1IROA 1VCXA 3S1RL 1S2ZA 1IRNA 2B5ID 5AI3A 5M3FL 2PYAA 4A3GL 4JAEA 2L0ZA 4E6YA 2M4YA 2YU9L 1PFYA 3QVDA 1YK5A 5MFZA 1SFOL 2C6BA 5MFPA 3RZDL 2NVTL 2CKCA 5FLML 5AI2A 1B2OA 1R9TL 1TWGL 3H0GL 2Z3RB 4C3JL 2XJTA 3JR7A 3RZ6A 3KYVA 1H7VA 3KYWA 2AUSB 3MQKB 1BE7A 3HJYB 4AR3A 2A6ED 1K83L 2WAQP 4ME3A 4AI3A 1NNQA 1ODHA 3A44A 2C6AA 3I4NL 1TWHL 5GAHc 1QCVA 1CAAA 5JVG1 3NFPI 2M6PA 3IU3I 3GTML 3S15L 1LKMA 2A68D 3HKZP 2V0EA 2RDVA 3GTGL 2NVYL 4XGHA 5RXNA 4TVMA 3GTPL 2HVYC 2O5JD 2J9UB 2ERJA 1BFYA 3PKJA 1VZHA 3GTJL 4POFA 4AI1A 3GTQL 5JVH1 1TWCL 2PMZP 4LHLA 2XJVA 2NYDA 1TWFL 2VUML 3K35A 4JAGA 1RYTA 1DVBA 3M3YL 1BQ8A 2LCQA 1PFUA 2CR8A 2VL6A 1IW7D 3KYYA 2ZIXA 4A93L 5K2ME 4G6BA 3I4ML 3PO3L 1BQ9A 2PVXA 5IY0A 5GAGc 3WWLA 2BE5D 3FKIL 5EINC 1IU5A 2R93L 3P8BA 4A3KL 2JI3A 5IYBL 2JA5L 1T9OA 3LWQB 1R0JA 5MGNA 2HR5A 4AHXA 3PIO1 8RXNA 5GADc 2M6OA 3GTLL 1DX8A
chains in the Genus database with same CATH topology
4AI3A 1NNQA 1CADA 1ODHA 2PSMC 2V0FA 1T9QA 3RZTA 4XXBB 5DM71 3A44A 4POGA 3LPEB 3PZAA 2C6AA 2XJQA 2KKDA 1E8JA 4K9FA 4UY81 4TPUA 1RDGA 3P2AA 1YUXA 1VZGA 3MPSA 4U671 4V196 1R0IA 5GAHc 5DM61 3PWFA 5MF6A 4AR6A 4AHYA 2A6HD 5AN9H 1QCVA 2XJRA 3RYGA 1CAAA 1R0HA 3VPBE 5JVG1 3NFPI 3PIP1 2M6PA 3B0AB 3IU3I 6RXNA 2Z3QB 1LKMA 2A68D 2K2DA 2V0EA 4LHNA 1Z92B 5EIOC 1B2JA 4JAFA 4GS7D 4ME3A 1YV1A 2RDVA 4ZN3B 3MSUA 4YWMA 4XGHA 5RXNA 4TVMA 2O5JD 2PVEA 1YUZA 3PKIA 1R0FA 2J9UB 2ERJA 1BFYA 3PKJA 1VZHA 7RXNA 4AR5A 1S24A 4POFA 1OWBA 1LKPA 1RWDA 2KN9A 3QQCE 1YK4A 2XJSA 4AI1A 1ZRPA 1QYBA 2JI1A 5JVH1 1OWCA 1JYBA 3SS2A 1NXGA 1IU6A 1WJVA 4WFN1 1RYQA 3KYUA 4LHLA 2XJVA 1R0GA 2NYDA 2PPTA 3K35A 1T9PA 2DSXA 4AI2A 2AYJA 2GMGA 2ERSA 4JAGA 2MS3A 3J7Z1 2H12A 1LKOA 2CKAA 2QL0A 4AI0A 1RYTA 2JI2A 1DVBA 1BQ8A 2LCQA 1IROA 1VCXA 1S2ZA 2CR8A 2VL6A 4RXNA 3WWNB 1IW7D 1IRNA 3KYYA 2ZIXA 4AR4A 2B5ID 5MLC3 1LTLA 5AI3A 4AHZA 5K2ME 4G6BA 2M4VA 3KYXA 2PYAA 4JAEA 2L0ZA 4E6YA 2M4YA 1SMUA 1S30A 1BQ9A 3QVDA 1YK5A 5MFZA 1B13A 1FHMA 2PVXA 1FHHA 2C6BA 1C09A 5IY0A 5MFPA 3J7Y1 1VZIA 5GAGc 3WWLA 3ZG6A 2BE5D 2CKCA 5AI2A 1B2OA 5EINC 1IU5A 1SMWA 4AHWA 2Z3RB 3P8BA 3B08B 2XJUA 4ZN1B 2JI3A 2XJTA 1RB9A 3RZ6A 1T9OA 4JADA 1B71A 1NXEA 5H1Sc 2V3BB 3KYVA 2A69D 1R0JA 4B8CD 1H7VA 3KYWA 1SMMA 5MGNA 2HR5A 2XJPA 4AHXA 1RDVA 8RXNA 5GAEc 1BE7A 3PIO1 3LNLA 5GADc 2M6OA 4AR3A 2A6ED 1DX8A 4YWLA 1BRFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PIP 1;  5DM6 1;  3J7Z 1;  3PIO 1;  5GAE c;  3J7Y 1;  5GAG c;  5GAD c;  5JVG 1;  4UY8 1;  5MLC 3;  5GAH c;  5JVH 1;  5DM7 1;  4U67 1;  4V19 6;  4WFN 1;  5H1S c; 
#chains in the Genus database with same CATH topology
 3CQZ L;  4A3L L;  5DM7 1;  2RFK B;  4TPU A;  1RDG A;  1VZG A;  4V19 6;  1PFW A;  5IYD L;  1R0I A;  3K7A L;  5MF6 A;  4AHY A;  5M5X L;  2JA7 L;  3RYG A;  3S1M L;  3VPB E;  3PIP 1;  2K2D A;  5C4J L;  5EIO C;  1B2J A;  5M3M L;  3LWP B;  1TWA L;  1YV1 A;  5C4X L;  3FDJ A;  1I3Q L;  2E2H L;  2PVE A;  1YUZ A;  2WB1 P;  7RXN A;  1S24 A;  2KN9 A;  1ZRP A;  3GTK L;  2JA6 L;  1OWC A;  1PFV A;  1WJV A;  2APO B;  1RYQ A;  4BY1 L;  2AYJ A;  2ERS A;  3S14 L;  3J7Z 1;  5IYC L;  3H9C A;  2CKA A;  5IP7 L;  4RXN A;  3WWN B;  4AR4 A;  3HOV L;  1LTL A;  3S17 L;  4AHZ A;  4A3E L;  4BY7 L;  1SMU A;  1S30 A;  1FHM A;  1FHH A;  1VZI A;  3ZG6 A;  3RZO L;  1SMW A;  3HAX C;  2XJU A;  4ZN1 B;  5C44 L;  4A3M L;  1RB9 A;  4JAD A;  1NXE A;  3H97 A;  1SMM A;  3H99 A;  2XJP A;  5GAE c;  4YWL A;  1BRF A;  2R92 L;  1CAD A;  2PSM C;  1T9Q A;  2NVX L;  4POG A;  2XJQ A;  2KKD A;  4X6A L;  4C3H L;  1YUX A;  3MPS A;  4U67 1;  2E2I L;  1F4L A;  2EY4 E;  3PWF A;  4A3B L;  1PZX A;  5AN9 H;  2XJR A;  1R0H A;  3B0A B;  6RXN A;  2Z3Q B;  1Z92 B;  4QIW P;  4JAF A;  4GS7 D;  2Y0S P;  3MSU A;  4YWM A;  1QQT A;  3PKI A;  1R0F A;  1Y1V L;  2NVQ L;  3QQC E;  4A3F L;  2JI1 A;  4C2M 1;  1JYB A;  3SS2 A;  1IU6 A;  4WFN 1;  4A3D L;  1T9P A;  4AI2 A;  2GMG A;  2MS3 A;  2H12 A;  3HOW L;  4A3C L;  4BBR L;  3HOY L;  5MLC 3;  2E2J L;  5C3E L;  3LWV B;  4BXX L;  3HOU L;  2M4V A;  3KYX A;  5M5Y L;  5M5W L;  2B63 L;  1B13 A;  1C09 A;  3J7Y 1;  3PO2 L;  1P7P A;  3LWO B;  4AHW A;  3B08 B;  3HOZ L;  1B71 A;  5H1S c;  2V3B B;  4B8C D;  2A69 D;  5IP9 L;  3HJW B;  1RDV A;  3LNL A;  4AYB P;  4A3I L;  1I6H L;  1I50 L;  2V0F A;  3RZT A;  4XXB B;  3LPE B;  3PZA A;  1E8J A;  4K9F A;  4UY8 1;  3P2A A;  1Y1W L;  3H9B A;  3S1N L;  2JA8 L;  5DM6 1;  2AQC A;  4AR6 A;  2A6H D;  4Y52 L;  4LHN A;  3PL5 A;  4ZN3 B;  3S16 L;  4Y7N L;  5FJ8 L;  3H3V M;  3GTO L;  4AR5 A;  1OWB A;  1LKP A;  1RWD A;  1YK4 A;  2XJS A;  3S2H L;  1QYB A;  3M4O L;  1NXG A;  3KYU A;  1R0G A;  2R7Z L;  3S2D L;  2PPT A;  1WCM L;  2DSX A;  3HOX L;  3LWR B;  3S1Q L;  4A3J L;  4BBS L;  1LKO A;  4C3I L;  4AI0 A;  2QL0 A;  2JI2 A;  1IRO A;  1VCX A;  3S1R L;  1S2Z A;  1IRN A;  2B5I D;  5AI3 A;  5M3F L;  2PYA A;  4A3G L;  4JAE A;  2L0Z A;  4E6Y A;  2M4Y A;  2YU9 L;  1PFY A;  3QVD A;  1YK5 A;  5MFZ A;  1SFO L;  2C6B A;  5MFP A;  3RZD L;  2NVT L;  2CKC A;  5FLM L;  5AI2 A;  1B2O A;  1R9T L;  1TWG L;  3H0G L;  2Z3R B;  4C3J L;  2XJT A;  3JR7 A;  3RZ6 A;  3KYV A;  1H7V A;  3KYW A;  2AUS B;  3MQK B;  1BE7 A;  3HJY B;  4AR3 A;  2A6E D;  1K83 L;  2WAQ P;  4ME3 A;  4AI3 A;  1NNQ A;  1ODH A;  3A44 A;  2C6A A;  3I4N L;  1TWH L;  5GAH c;  1QCV A;  1CAA A;  5JVG 1;  3NFP I;  2M6P A;  3IU3 I;  3GTM L;  3S15 L;  1LKM A;  2A68 D;  3HKZ P;  2V0E A;  2RDV A;  3GTG L;  2NVY L;  4XGH A;  5RXN A;  4TVM A;  3GTP L;  2HVY C;  2O5J D;  2J9U B;  2ERJ A;  1BFY A;  3PKJ A;  1VZH A;  3GTJ L;  4POF A;  4AI1 A;  3GTQ L;  5JVH 1;  1TWC L;  2PMZ P;  4LHL A;  2XJV A;  2NYD A;  1TWF L;  2VUM L;  3K35 A;  4JAG A;  1RYT A;  1DVB A;  3M3Y L;  1BQ8 A;  2LCQ A;  1PFU A;  2CR8 A;  2VL6 A;  1IW7 D;  3KYY A;  2ZIX A;  4A93 L;  5K2M E;  4G6B A;  3I4M L;  3PO3 L;  1BQ9 A;  2PVX A;  5IY0 A;  5GAG c;  3WWL A;  2BE5 D;  3FKI L;  5EIN C;  1IU5 A;  2R93 L;  3P8B A;  4A3K L;  2JI3 A;  5IYB L;  2JA5 L;  1T9O A;  3LWQ B;  1R0J A;  5MGN A;  2HR5 A;  4AHX A;  3PIO 1;  8RXN A;  5GAD c;  2M6O A;  3GTL L;  1DX8 A; 
#chains in the Genus database with same CATH homology
 4AI3 A;  1NNQ A;  1CAD A;  1ODH A;  2PSM C;  2V0F A;  1T9Q A;  3RZT A;  4XXB B;  5DM7 1;  3A44 A;  4POG A;  3LPE B;  3PZA A;  2C6A A;  2XJQ A;  2KKD A;  1E8J A;  4K9F A;  4UY8 1;  4TPU A;  1RDG A;  3P2A A;  1YUX A;  1VZG A;  3MPS A;  4U67 1;  4V19 6;  1R0I A;  5GAH c;  5DM6 1;  3PWF A;  5MF6 A;  4AR6 A;  4AHY A;  2A6H D;  5AN9 H;  1QCV A;  2XJR A;  3RYG A;  1CAA A;  1R0H A;  3VPB E;  5JVG 1;  3NFP I;  3PIP 1;  2M6P A;  3B0A B;  3IU3 I;  6RXN A;  2Z3Q B;  1LKM A;  2A68 D;  2K2D A;  2V0E A;  4LHN A;  1Z92 B;  5EIO C;  1B2J A;  4JAF A;  4GS7 D;  4ME3 A;  1YV1 A;  2RDV A;  4ZN3 B;  3MSU A;  4YWM A;  4XGH A;  5RXN A;  4TVM A;  2O5J D;  2PVE A;  1YUZ A;  3PKI A;  1R0F A;  2J9U B;  2ERJ A;  1BFY A;  3PKJ A;  1VZH A;  7RXN A;  4AR5 A;  1S24 A;  4POF A;  1OWB A;  1LKP A;  1RWD A;  2KN9 A;  3QQC E;  1YK4 A;  2XJS A;  4AI1 A;  1ZRP A;  1QYB A;  2JI1 A;  5JVH 1;  1OWC A;  1JYB A;  3SS2 A;  1NXG A;  1IU6 A;  1WJV A;  4WFN 1;  1RYQ A;  3KYU A;  4LHL A;  2XJV A;  1R0G A;  2NYD A;  2PPT A;  3K35 A;  1T9P A;  2DSX A;  4AI2 A;  2AYJ A;  2GMG A;  2ERS A;  4JAG A;  2MS3 A;  3J7Z 1;  2H12 A;  1LKO A;  2CKA A;  2QL0 A;  4AI0 A;  1RYT A;  2JI2 A;  1DVB A;  1BQ8 A;  2LCQ A;  1IRO A;  1VCX A;  1S2Z A;  2CR8 A;  2VL6 A;  4RXN A;  3WWN B;  1IW7 D;  1IRN A;  3KYY A;  2ZIX A;  4AR4 A;  2B5I D;  5MLC 3;  1LTL A;  5AI3 A;  4AHZ A;  5K2M E;  4G6B A;  2M4V A;  3KYX A;  2PYA A;  4JAE A;  2L0Z A;  4E6Y A;  2M4Y A;  1SMU A;  1S30 A;  1BQ9 A;  3QVD A;  1YK5 A;  5MFZ A;  1B13 A;  1FHM A;  2PVX A;  1FHH A;  2C6B A;  1C09 A;  5IY0 A;  5MFP A;  3J7Y 1;  1VZI A;  5GAG c;  3WWL A;  3ZG6 A;  2BE5 D;  2CKC A;  5AI2 A;  1B2O A;  5EIN C;  1IU5 A;  1SMW A;  4AHW A;  2Z3R B;  3P8B A;  3B08 B;  2XJU A;  4ZN1 B;  2JI3 A;  2XJT A;  1RB9 A;  3RZ6 A;  1T9O A;  4JAD A;  1B71 A;  1NXE A;  5H1S c;  2V3B B;  3KYV A;  2A69 D;  1R0J A;  4B8C D;  1H7V A;  3KYW A;  1SMM A;  5MGN A;  2HR5 A;  2XJP A;  4AHX A;  1RDV A;  8RXN A;  5GAE c;  1BE7 A;  3PIO 1;  3LNL A;  5GAD c;  2M6O A;  4AR3 A;  2A6E D;  1DX8 A;  4YWL A;  1BRF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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