4WFNK

Crystal structure of the large ribosomal subunit (50s) of deinococcus radiodurans containing a three residue insertion in l22 in complex with erythromycin
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
113
structure length
113
Chain Sequence
HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2
publication title The Ribosomal Protein uL22 Modulates the Shape of the Protein Exit Tunnel.
pubmed doi rcsb
total genus 28
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2014-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF01196 Ribosomal_L17 Ribosomal protein L17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1030.10 Alpha Beta Alpha-Beta Complex 50s Ribosomal Protein L17; Chain: A, Ribosomal protein L17 4wfnK00
5HL7K 3PIOK 2CQMA 5MLCP 4WF9K 5DM7K 4IOAK 4WCEK 5H1SP 5GAGO 3J7ZN 2ZJRK 4WFNK 3CF5K 4IOCK 2ZJQK 4U67K 4WFBK 4UY8N 5GAHO 2ZJPK 5GAEO 5GADO 5JVHK 5DM6K 4WFAK 3DLLK 5JVGK 1GD8A 3PIPK 4IO9K
chains in the Genus database with same CATH superfamily
5HL7K 3PIOK 2CQMA 5MLCP 4WF9K 5DM7K 4IOAK 4WCEK 5H1SP 5GAGO 3J7ZN 2ZJRK 4WFNK 3CF5K 4IOCK 2ZJQK 4U67K 4WFBK 4UY8N 5GAHO 2ZJPK 5GAEO 5GADO 5JVHK 5DM6K 4WFAK 3DLLK 5JVGK 1GD8A 3PIPK 4IO9K
chains in the Genus database with same CATH topology
5HL7K 3PIOK 2CQMA 5MLCP 4WF9K 5DM7K 4IOAK 4WCEK 5H1SP 5GAGO 3J7ZN 2ZJRK 4WFNK 3CF5K 4IOCK 2ZJQK 4U67K 4WFBK 4UY8N 5GAHO 2ZJPK 5GAEO 5GADO 5JVHK 5DM6K 4WFAK 3DLLK 5JVGK 1GD8A 3PIPK 4IO9K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HL7 K;  3PIO K;  2CQM A;  5MLC P;  4WF9 K;  5DM7 K;  4IOA K;  4WCE K;  5H1S P;  5GAG O;  3J7Z N;  2ZJR K;  4WFN K;  3CF5 K;  4IOC K;  2ZJQ K;  4U67 K;  4WFB K;  4UY8 N;  5GAH O;  2ZJP K;  5GAE O;  5GAD O;  5JVH K;  5DM6 K;  4WFA K;  3DLL K;  5JVG K;  1GD8 A;  3PIP K;  4IO9 K; 
#chains in the Genus database with same CATH topology
 5HL7 K;  3PIO K;  2CQM A;  5MLC P;  4WF9 K;  5DM7 K;  4IOA K;  4WCE K;  5H1S P;  5GAG O;  3J7Z N;  2ZJR K;  4WFN K;  3CF5 K;  4IOC K;  2ZJQ K;  4U67 K;  4WFB K;  4UY8 N;  5GAH O;  2ZJP K;  5GAE O;  5GAD O;  5JVH K;  5DM6 K;  4WFA K;  3DLL K;  5JVG K;  1GD8 A;  3PIP K;  4IO9 K; 
#chains in the Genus database with same CATH homology
 5HL7 K;  3PIO K;  2CQM A;  5MLC P;  4WF9 K;  5DM7 K;  4IOA K;  4WCE K;  5H1S P;  5GAG O;  3J7Z N;  2ZJR K;  4WFN K;  3CF5 K;  4IOC K;  2ZJQ K;  4U67 K;  4WFB K;  4UY8 N;  5GAH O;  2ZJP K;  5GAE O;  5GAD O;  5JVH K;  5DM6 K;  4WFA K;  3DLL K;  5JVG K;  1GD8 A;  3PIP K;  4IO9 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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