4WGJA

Crystal structure of bepc protein (virb-translocated bartonella effector protein) with bound amppnp from bartonella tribocorum
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
210
structure length
210
Chain Sequence
HHMEQNYLYKGTTTLKNKYGIKDPNKLYERCNHDVVKEAVNFRHEPPPQNFDAAYLSLIHWSLFHKTFEWAGHTRDTSFTFEDGTTARMPAMRPKGYEAPFAIGPQIKKELKQLEKTLNQKNNLKGLSHQEFAENAADVFMALEHAHPFRKGNGRANRMFMEKLGQAAGHTVDFSFITKGRMTTACIEAMQYGNSQPMKDLFEDITHPQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords BepC protein
publication title Crystal Structure of BepC protein (VirB-translocated Bartonella effector protein) with bound AMPPNP from Bartonella tribocorum
rcsb
source organism Bartonella tribocorum
total genus 77
structure length 210
sequence length 210
ec nomenclature
pdb deposition date 2014-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 4wgjA00
4ITRA 3N3UA 4X2DA 4WGJA 3SE5A 3ZCBA 4PY3A 2VZAA 3SN9A 5JFFA 4U07A 3ZC7A 4X2CA 4NPSA 4U0UA 2F6SA 4X2EA 5CKLA 5JJ6A 4XI8A 5EU0A 4M16A 3LETA 2JK8A 3ZLMA 2VY3A 3SHGA 5JJ7A 3CUCA 4U04A 4U0SA 5CMTA 3S6AA 2G03A 4N67A 4LU4A 5CGLA 4U0ZA 5JFZA
chains in the Genus database with same CATH superfamily
4ITRA 3N3UA 4X2DA 4WGJA 3SE5A 3ZCBA 4PY3A 2VZAA 3SN9A 5JFFA 4U07A 3ZC7A 4X2CA 4NPSA 4U0UA 2NUDA 2F6SA 4X2EA 5CKLA 5JJ6A 4XI8A 5EU0A 4M16A 3LETA 2JK8A 3ZLMA 2VY3A 2NUNA 3SHGA 5JJ7A 3CUCA 4U04A 1NH1A 4U0SA 5CMTA 3S6AA 2G03A 4N67A 4LU4A 5CGLA 4U0ZA 5JFZA
chains in the Genus database with same CATH topology
4ITRA 3N3UA 4X2DA 4WGJA 3SE5A 3ZCBA 4PY3A 2VZAA 3SN9A 5JFFA 4U07A 3ZC7A 4X2CA 4NPSA 4U0UA 2F6SA 4X2EA 5CKLA 5JJ6A 4XI8A 5EU0A 4M16A 3LETA 2JK8A 3ZLMA 2VY3A 3SHGA 5JJ7A 3CUCA 4U04A 4U0SA 5CMTA 3S6AA 2G03A 4N67A 4LU4A 5CGLA 4U0ZA 5JFZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ITR A;  3N3U A;  4X2D A;  4WGJ A;  3SE5 A;  3ZCB A;  4PY3 A;  2VZA A;  3SN9 A;  5JFF A;  4U07 A;  3ZC7 A;  4X2C A;  4NPS A;  4U0U A;  2F6S A;  4X2E A;  5CKL A;  5JJ6 A;  4XI8 A;  5EU0 A;  4M16 A;  3LET A;  2JK8 A;  3ZLM A;  2VY3 A;  3SHG A;  5JJ7 A;  3CUC A;  4U04 A;  4U0S A;  5CMT A;  3S6A A;  2G03 A;  4N67 A;  4LU4 A;  5CGL A;  4U0Z A;  5JFZ A; 
#chains in the Genus database with same CATH topology
 4ITR A;  3N3U A;  4X2D A;  4WGJ A;  3SE5 A;  3ZCB A;  4PY3 A;  2VZA A;  3SN9 A;  5JFF A;  4U07 A;  3ZC7 A;  4X2C A;  4NPS A;  4U0U A;  2NUD A;  2F6S A;  4X2E A;  5CKL A;  5JJ6 A;  4XI8 A;  5EU0 A;  4M16 A;  3LET A;  2JK8 A;  3ZLM A;  2VY3 A;  2NUN A;  3SHG A;  5JJ7 A;  3CUC A;  4U04 A;  1NH1 A;  4U0S A;  5CMT A;  3S6A A;  2G03 A;  4N67 A;  4LU4 A;  5CGL A;  4U0Z A;  5JFZ A; 
#chains in the Genus database with same CATH homology
 4ITR A;  3N3U A;  4X2D A;  4WGJ A;  3SE5 A;  3ZCB A;  4PY3 A;  2VZA A;  3SN9 A;  5JFF A;  4U07 A;  3ZC7 A;  4X2C A;  4NPS A;  4U0U A;  2F6S A;  4X2E A;  5CKL A;  5JJ6 A;  4XI8 A;  5EU0 A;  4M16 A;  3LET A;  2JK8 A;  3ZLM A;  2VY3 A;  3SHG A;  5JJ7 A;  3CUC A;  4U04 A;  4U0S A;  5CMT A;  3S6A A;  2G03 A;  4N67 A;  4LU4 A;  5CGL A;  4U0Z A;  5JFZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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