4WHSD

4-fluorocatechol bound to protocatechuate 3,4-dioxygenase (pseudomonas putida) at ph 8.5
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
238
structure length
236
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
publication title Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 52
structure length 236
sequence length 238
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2014-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00775 Dioxygenase_C Dioxygenase
D PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 4whsD00
1S9AA 3PCGM 1YKPB 1EO2A 3O5UA 3MI5M 3T67M 4WHRA 2BUQA 1EOAB 4ILTA 2PCDM 3LKTM 1TMXA 3PCIA 2BUQB 3TH1A 5TD3A 3PCGA 3O6JA 3MI5A 3HJSA 1EO9B 3PCMM 3MFLA 3PCNM 3PCFM 3PCDA 2PCDA 1EOBA 2BUTB 4WHQA 3MI1A 2BUMB 2BUZA 3PCAM 3MV6A 2BUWA 2XSVA 3PCJA 2XSUA 4WHQB 4WHSB 2BV0A 2BUZB 3PCNA 1YKOA 3LMXM 3PCBM 2AZQA 1EO2B 3T63A 3PCAA 4WHRB 1YKOB 2BUUA 4ILVA 3HHXA 3PCKM 2BUVA 3PCEM 3T67A 2BUUB 3LMXA 3HKPA 2BUXA 1YKLA 3LKTA 2BURA 2BUVB 3PCLM 3PCCM 4WHPD 1YKKA 3HHYA 1YKLB 3I51A 1EOBB 2BURB 1YKNA 3HGIA 3PCMA 2BUYA 4WHOD 2XSRA 4WHOA 3PCFA 2BOYA 2BUWB 3LXVM 3PCHM 1YKMA 2BV0B 3PCCA 4WHRF 1EOCA 1YKMB 3MV4M 3HJQA 1EOCB 1YKPA 3PCIM 3PCBA 3N9TA 3HJ8A 1EOAA 4WHPA 3I4YA 2BUXB 3MV4A 3PCKA 3O32A 3MFLM 3PCEA 3O6RA 3PCDM 4WHPB 3MI1M 1YKKB 1EO9A 1YKNB 3MV6M 1DLMA 3PCLA 3PCJM 1DLQA 1DMHA 2BUTA 2BUYB 4WHOB 2BUMA 4WHSD 4WHSA 3I4VA 3PCHA 3LXVA 3T63M 1DLTA
chains in the Genus database with same CATH superfamily
1S9AA 3PCGM 1YKPB 1EO2A 3O5UA 3MI5M 3T67M 4WHRA 2BUQA 1EOAB 4ILTA 2PCDM 3LKTM 1TMXA 3PCIA 2BUQB 3TH1A 5TD3A 3PCGA 3O6JA 3MI5A 3HJSA 1EO9B 3PCMM 3MFLA 3PCNM 3PCFM 3PCDA 2PCDA 1EOBA 2BUTB 4WHQA 3MI1A 2BUMB 2BUZA 3PCAM 3MV6A 2BUWA 2XSVA 3PCJA 2XSUA 4WHQB 4WHSB 2BV0A 2BUZB 3PCNA 1YKOA 3LMXM 3PCBM 2AZQA 1EO2B 3T63A 3PCAA 4WHRB 1YKOB 2BUUA 4ILVA 3HHXA 3PCKM 2BUVA 3PCEM 3T67A 2BUUB 3LMXA 3HKPA 2BUXA 1YKLA 3LKTA 2BURA 2BUVB 3PCLM 3PCCM 4WHPD 1YKKA 3HHYA 1YKLB 3I51A 1EOBB 2BURB 1YKNA 3HGIA 3PCMA 2BUYA 4WHOD 2XSRA 4WHOA 3PCFA 2BOYA 2BUWB 3LXVM 3PCHM 1YKMA 2BV0B 3PCCA 4WHRF 1EOCA 1YKMB 3MV4M 3HJQA 1EOCB 1YKPA 3PCIM 3PCBA 3N9TA 3HJ8A 1EOAA 4WHPA 3I4YA 2BUXB 3MV4A 3PCKA 3O32A 3MFLM 3PCEA 3O6RA 3PCDM 4WHPB 3MI1M 1YKKB 1EO9A 1YKNB 3MV6M 1DLMA 3PCLA 3PCJM 1DLQA 1DMHA 2BUTA 2BUYB 4WHOB 2BUMA 4WHSD 4WHSA 3I4VA 3PCHA 3LXVA 3T63M 1DLTA
chains in the Genus database with same CATH topology
1S9AA 3PCGM 1YKPB 1EO2A 3O5UA 3MI5M 3T67M 4WHRA 2BUQA 1EOAB 4ILTA 2PCDM 3LKTM 1TMXA 3PCIA 2BUQB 3TH1A 5TD3A 3PCGA 3O6JA 3MI5A 3HJSA 1EO9B 3PCMM 3MFLA 3PCNM 3PCFM 3PCDA 2PCDA 1EOBA 2BUTB 4WHQA 3MI1A 2BUMB 2BUZA 3PCAM 3MV6A 2BUWA 2XSVA 3PCJA 2XSUA 4WHQB 4WHSB 2BV0A 2BUZB 3PCNA 1YKOA 3LMXM 3PCBM 2AZQA 1EO2B 3T63A 3PCAA 4WHRB 1YKOB 2BUUA 4ILVA 3HHXA 3PCKM 2BUVA 3PCEM 3T67A 2BUUB 3LMXA 3HKPA 2BUXA 1YKLA 3LKTA 2BURA 2BUVB 3PCLM 3PCCM 4WHPD 1YKKA 3HHYA 1YKLB 3I51A 1EOBB 2BURB 1YKNA 3HGIA 3PCMA 2BUYA 4WHOD 2XSRA 4WHOA 3PCFA 2BOYA 2BUWB 3LXVM 3PCHM 1YKMA 2BV0B 3PCCA 4WHRF 1EOCA 1YKMB 3MV4M 3HJQA 1EOCB 1YKPA 3PCIM 3PCBA 3N9TA 3HJ8A 1EOAA 4WHPA 3I4YA 2BUXB 3MV4A 3PCKA 3O32A 3MFLM 3PCEA 3O6RA 3PCDM 4WHPB 3MI1M 1YKKB 1EO9A 1YKNB 3MV6M 1DLMA 3PCLA 3PCJM 1DLQA 1DMHA 2BUTA 2BUYB 4WHOB 2BUMA 4WHSD 4WHSA 3I4VA 3PCHA 3LXVA 3T63M 1DLTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S9A A;  3PCG M;  1YKP B;  1EO2 A;  3O5U A;  3MI5 M;  3T67 M;  4WHR A;  2BUQ A;  1EOA B;  4ILT A;  2PCD M;  3LKT M;  1TMX A;  3PCI A;  2BUQ B;  3TH1 A;  5TD3 A;  3PCG A;  3O6J A;  3MI5 A;  3HJS A;  1EO9 B;  3PCM M;  3MFL A;  3PCN M;  3PCF M;  3PCD A;  2PCD A;  1EOB A;  2BUT B;  4WHQ A;  3MI1 A;  2BUM B;  2BUZ A;  3PCA M;  3MV6 A;  2BUW A;  2XSV A;  3PCJ A;  2XSU A;  4WHQ B;  4WHS B;  2BV0 A;  2BUZ B;  3PCN A;  1YKO A;  3LMX M;  3PCB M;  2AZQ A;  1EO2 B;  3T63 A;  3PCA A;  4WHR B;  1YKO B;  2BUU A;  4ILV A;  3HHX A;  3PCK M;  2BUV A;  3PCE M;  3T67 A;  2BUU B;  3LMX A;  3HKP A;  2BUX A;  1YKL A;  3LKT A;  2BUR A;  2BUV B;  3PCL M;  3PCC M;  4WHP D;  1YKK A;  3HHY A;  1YKL B;  3I51 A;  1EOB B;  2BUR B;  1YKN A;  3HGI A;  3PCM A;  2BUY A;  4WHO D;  2XSR A;  4WHO A;  3PCF A;  2BOY A;  2BUW B;  3LXV M;  3PCH M;  1YKM A;  2BV0 B;  3PCC A;  4WHR F;  1EOC A;  1YKM B;  3MV4 M;  3HJQ A;  1EOC B;  1YKP A;  3PCI M;  3PCB A;  3N9T A;  3HJ8 A;  1EOA A;  4WHP A;  3I4Y A;  2BUX B;  3MV4 A;  3PCK A;  3O32 A;  3MFL M;  3PCE A;  3O6R A;  3PCD M;  4WHP B;  3MI1 M;  1YKK B;  1EO9 A;  1YKN B;  3MV6 M;  1DLM A;  3PCL A;  3PCJ M;  1DLQ A;  1DMH A;  2BUT A;  2BUY B;  4WHO B;  2BUM A;  4WHS D;  4WHS A;  3I4V A;  3PCH A;  3LXV A;  3T63 M;  1DLT A; 
#chains in the Genus database with same CATH topology
 1S9A A;  3PCG M;  1YKP B;  1EO2 A;  3O5U A;  3MI5 M;  3T67 M;  4WHR A;  2BUQ A;  1EOA B;  4ILT A;  2PCD M;  3LKT M;  1TMX A;  3PCI A;  2BUQ B;  3TH1 A;  5TD3 A;  3PCG A;  3O6J A;  3MI5 A;  3HJS A;  1EO9 B;  3PCM M;  3MFL A;  3PCN M;  3PCF M;  3PCD A;  2PCD A;  1EOB A;  2BUT B;  4WHQ A;  3MI1 A;  2BUM B;  2BUZ A;  3PCA M;  3MV6 A;  2BUW A;  2XSV A;  3PCJ A;  2XSU A;  4WHQ B;  4WHS B;  2BV0 A;  2BUZ B;  3PCN A;  1YKO A;  3LMX M;  3PCB M;  2AZQ A;  1EO2 B;  3T63 A;  3PCA A;  4WHR B;  1YKO B;  2BUU A;  4ILV A;  3HHX A;  3PCK M;  2BUV A;  3PCE M;  3T67 A;  2BUU B;  3LMX A;  3HKP A;  2BUX A;  1YKL A;  3LKT A;  2BUR A;  2BUV B;  3PCL M;  3PCC M;  4WHP D;  1YKK A;  3HHY A;  1YKL B;  3I51 A;  1EOB B;  2BUR B;  1YKN A;  3HGI A;  3PCM A;  2BUY A;  4WHO D;  2XSR A;  4WHO A;  3PCF A;  2BOY A;  2BUW B;  3LXV M;  3PCH M;  1YKM A;  2BV0 B;  3PCC A;  4WHR F;  1EOC A;  1YKM B;  3MV4 M;  3HJQ A;  1EOC B;  1YKP A;  3PCI M;  3PCB A;  3N9T A;  3HJ8 A;  1EOA A;  4WHP A;  3I4Y A;  2BUX B;  3MV4 A;  3PCK A;  3O32 A;  3MFL M;  3PCE A;  3O6R A;  3PCD M;  4WHP B;  3MI1 M;  1YKK B;  1EO9 A;  1YKN B;  3MV6 M;  1DLM A;  3PCL A;  3PCJ M;  1DLQ A;  1DMH A;  2BUT A;  2BUY B;  4WHO B;  2BUM A;  4WHS D;  4WHS A;  3I4V A;  3PCH A;  3LXV A;  3T63 M;  1DLT A; 
#chains in the Genus database with same CATH homology
 1S9A A;  3PCG M;  1YKP B;  1EO2 A;  3O5U A;  3MI5 M;  3T67 M;  4WHR A;  2BUQ A;  1EOA B;  4ILT A;  2PCD M;  3LKT M;  1TMX A;  3PCI A;  2BUQ B;  3TH1 A;  5TD3 A;  3PCG A;  3O6J A;  3MI5 A;  3HJS A;  1EO9 B;  3PCM M;  3MFL A;  3PCN M;  3PCF M;  3PCD A;  2PCD A;  1EOB A;  2BUT B;  4WHQ A;  3MI1 A;  2BUM B;  2BUZ A;  3PCA M;  3MV6 A;  2BUW A;  2XSV A;  3PCJ A;  2XSU A;  4WHQ B;  4WHS B;  2BV0 A;  2BUZ B;  3PCN A;  1YKO A;  3LMX M;  3PCB M;  2AZQ A;  1EO2 B;  3T63 A;  3PCA A;  4WHR B;  1YKO B;  2BUU A;  4ILV A;  3HHX A;  3PCK M;  2BUV A;  3PCE M;  3T67 A;  2BUU B;  3LMX A;  3HKP A;  2BUX A;  1YKL A;  3LKT A;  2BUR A;  2BUV B;  3PCL M;  3PCC M;  4WHP D;  1YKK A;  3HHY A;  1YKL B;  3I51 A;  1EOB B;  2BUR B;  1YKN A;  3HGI A;  3PCM A;  2BUY A;  4WHO D;  2XSR A;  4WHO A;  3PCF A;  2BOY A;  2BUW B;  3LXV M;  3PCH M;  1YKM A;  2BV0 B;  3PCC A;  4WHR F;  1EOC A;  1YKM B;  3MV4 M;  3HJQ A;  1EOC B;  1YKP A;  3PCI M;  3PCB A;  3N9T A;  3HJ8 A;  1EOA A;  4WHP A;  3I4Y A;  2BUX B;  3MV4 A;  3PCK A;  3O32 A;  3MFL M;  3PCE A;  3O6R A;  3PCD M;  4WHP B;  3MI1 M;  1YKK B;  1EO9 A;  1YKN B;  3MV6 M;  1DLM A;  3PCL A;  3PCJ M;  1DLQ A;  1DMH A;  2BUT A;  2BUY B;  4WHO B;  2BUM A;  4WHS D;  4WHS A;  3I4V A;  3PCH A;  3LXV A;  3T63 M;  1DLT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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