4WPCA

Crystal structure of rgd1p f-bar domain in complex with inositol phosphate
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
297
structure length
283
Chain Sequence
FSTPEIKKVLNSDVAINALLSRLKQSLLTCEEFMKFIRKKYAFEEEHVQELSKQYKHFFNIQNSSLKKMIHEVLGFDGKMAQVKQSYITALQKMYSEISSLLLTMTKLRKSVKENSKRLEKDVSDAIHSAEKAQSRYNSLCQDWDKLRKTKLTLRGSKTTKEQEEELLRKIDNADLEYKQKVDHSNSLRNTFITKERPRIVQELKDLILEIDTAMTIQLQKYTIWTENLVLNTGVTISPLDSTKSMKSFAGSVSNERDLYSFLNKYNQLINKNLIPVSYKKHP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RHO GTPase-activating protein RGD1
publication title Comparison of Saccharomyces cerevisiae F-BAR Domain Structures Reveals a Conserved Inositol Phosphate Binding Site.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Lipid binding protein
total genus 112
structure length 283
sequence length 297
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-10-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4wpcA00
1X03A 4BNEA 2Z0VA 2ELBA 2X3VA 1URUA 5C5BB 4AKVA 2Q13A 2RAJA 3ABHA 2Z0OA 3HAHA 2FICA 4AVMA 2V0OA 3PLTA 1I4TA 3G9GA 3OK8A 4DCNC 1I49A 2RAKA 4NQIA 3LLLA 4NSWA 4WPCA 2Z0NA 3QNIA 3QWEA 4H8SA 4FZSA 3SOGA 3HAIA 3I2WA 2D1LA 1I4LA 1WDZA 3CAZA 1X04A 2Q12A 2EFKA 3ACOA 3M3WA 2D4CA 3Q0KA 3Q84A 1I4DA 3SYVA 3HAJA 2EFLA 4DYLA 5C5BA 3QE6A 1Y2OA 2X3WA 4ATMA 3DYTA 2YKTA 2RAIA 2X3XA 4I1QA 4WPEA 1ZWWA 2C08A
chains in the Genus database with same CATH superfamily
4HR1B 4BNEA 2ZXQA 4H6IA 1LQ7A 4EZQA 3T46A 1O7DB 4AZ5A 4EZNA 3QNJA 3T4AG 4H8SA 1ZYLA 2F7PA 3ZEDA 3EJSA 4FZPA 2PY6A 2F7RA 3D2FA 1E2UA 3T47A 3BVXA 2EFKA 2D4CA 4HYBA 4EZOA 3RV1A 2F1BA 3D52A 2RT6A 1HXKA 2OZNB 1HWWA 2D1LA 2ALWA 4AZCA 2O0I1 3ACOA 3Q0KA 1W9MA 1OA0A 3DDGA 2X3WA 3DYTA 3T48A 3OHXM 1SU6A 3OK8A 2GA9D 3CZSA 4R5KA 3LLLA 4JWEA 4IM0A 3SYVA 3M3WA 1DKXA 3LVTA 4DYLA 3RPMA 5C5BA 4ATMA 2OBMA 2FYVA 3DX1A 4JNFA 1TQVA 3O3MB 3L3PA 3VKHA 3VEBA 1UPXA 2Z0NA 5FLEX 3QNIA 3BVUA 3DX0A 4EZYA 3ER9B 2RAIA 4I1QA 4EZPA 4UDYX 2OW6A 1URUA 1E1DA 1I4TA 1SU8A 4EZRA 4HY9A 2GF4A 3UITA 2NCZA 4EZTA 2GAFD 2OW7A 4JWDA 3CZNA 3DX4A 2C08A 1JQKA 2X3VA 2EWFA 3F7WA 2YL6A 3DX2A 3GI7A 1OAOA 4JNEA 5TKYA 5KBPA 3CVRA 3O3NB 4H6HA 3Q84A 4R5GA 4B9QA 3KAWA 2QKWA 2PMRA 1SU7A 3HAHA 3BLBA 1DKYA 3BVVA 2N3KA 4FZOA 3EJQA 1U00A 4UDXX 4JL9A 3SOGA 4IM2A 3T49A 4EZSA 1QWUA 2YKTA 2YL8A 2Z0VA 2Z8YA 2F7OA 3A98A 4KIKB 4WPCA 4EZVA 1R34A 3HAIA 3EJPA 4EZXA 3BUQA 2YI9A 2LM0A 3BUIA 2YLAA 2WINM 3DPOA 4HR1A 3BUPA 3DDFA 3ERCC 3ABHA 3D4ZA 2KHOA 3RV0A 4G6QA 2LXYA 3D2EA 5E84A 3DPQA 1I4DA 5FIGA 1OA1A 3KDRA 3L3OM 1ZWWA 4JLCA 4AVMA 4JWIA 3B52X 3D51A 2F7QA 3CAZA 1TQSA 2X5CA 2EFLA 3QE6A 3B53X 4WPEA 4KIKA 1PS3A 3DPPA 4PO2A 3D50A 2Z0OA 4EZWA 2ND1A 1O7DC 4NSWA 4EZZA 3VEAA 2EX3B 2ND0A 4F00A 4IWPA 2QFFA 4IWOA 3O3OB 1Y2OA 3KAVA 3CKDA 3I39X 2YIBA 2ELBA 4AZHA 5C5BB 4NPHA 3BVTA 3I2WA 2OO2A 4FM3A 1WDZA 4IWQA 3OWGA 4AZ7A 2Q12A 1HTYA 1DKZA 4F01A 4IW0A 3ER8C 1QWNA 3C7NA 1GNTA 4E3CA 2FICA 4AZGA 1I49A 4NQIA 2F18A 1SUFA 3I01A 1MJGA 3DX3A 3B51X 1X04A 2QXLA 2YIVX 2YL9A 1R33A 2RAJA 4JN4A 2WYHA 4DCNC 2F1AA 3QA8A 2OBLA 4FZSA 1I4LA 4AZ6A 3EJTA 3EJUA 3CV5A 3HAJA 1TQWA 4M0MA 2X3XA 3BUDA 4E81A 1X03A 4R5LA 4AKVA 2YIAA 4JWCA 3BUBA 3FD9A 3LMFA 2RAKA 4IM3A 4D8JA 1YWMA 4AZBA 1TQTA 2WYIA 1GN9A 3D4YA 1QX1A 4R5IA 4AZCB 4R5JA 3BVWA 2Q13A 2JNSA 2V0OA 3PLTA 2YLLA 1E9VA 3G9GA 3EJRA 3QWEA 2JNKA 2YL5A 1R5EA 4EZUA 2YI8A 1TQUA 1GNLA 4AZIA 2MI7A 3I04A
chains in the Genus database with same CATH topology
1X03A 4BNEA 2Z0VA 2ELBA 2X3VA 1URUA 5C5BB 4AKVA 2Q13A 2RAJA 3ABHA 2Z0OA 3HAHA 2FICA 4AVMA 2V0OA 3PLTA 1I4TA 3G9GA 3OK8A 4DCNC 1I49A 2RAKA 4NQIA 3LLLA 4NSWA 4WPCA 2Z0NA 3QNIA 3QWEA 4H8SA 4FZSA 3SOGA 3HAIA 3I2WA 2D1LA 1I4LA 1WDZA 3CAZA 1X04A 2Q12A 2EFKA 3ACOA 3M3WA 2D4CA 3Q0KA 3Q84A 1I4DA 3SYVA 3HAJA 2EFLA 4DYLA 5C5BA 3QE6A 1Y2OA 2X3WA 4ATMA 3DYTA 2YKTA 2RAIA 2X3XA 4I1QA 4WPEA 1ZWWA 2C08A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X03 A;  4BNE A;  2Z0V A;  2ELB A;  2X3V A;  1URU A;  5C5B B;  4AKV A;  2Q13 A;  2RAJ A;  3ABH A;  2Z0O A;  3HAH A;  2FIC A;  4AVM A;  2V0O A;  3PLT A;  1I4T A;  3G9G A;  3OK8 A;  4DCN C;  1I49 A;  2RAK A;  4NQI A;  3LLL A;  4NSW A;  4WPC A;  2Z0N A;  3QNI A;  3QWE A;  4H8S A;  4FZS A;  3SOG A;  3HAI A;  3I2W A;  2D1L A;  1I4L A;  1WDZ A;  3CAZ A;  1X04 A;  2Q12 A;  2EFK A;  3ACO A;  3M3W A;  2D4C A;  3Q0K A;  3Q84 A;  1I4D A;  3SYV A;  3HAJ A;  2EFL A;  4DYL A;  5C5B A;  3QE6 A;  1Y2O A;  2X3W A;  4ATM A;  3DYT A;  2YKT A;  2RAI A;  2X3X A;  4I1Q A;  4WPE A;  1ZWW A;  2C08 A; 
#chains in the Genus database with same CATH topology
 4HR1 B;  4BNE A;  2ZXQ A;  4H6I A;  1LQ7 A;  4EZQ A;  3T46 A;  1O7D B;  4AZ5 A;  4EZN A;  3QNJ A;  3T4A G;  4H8S A;  1ZYL A;  2F7P A;  3ZED A;  3EJS A;  4FZP A;  2PY6 A;  2F7R A;  3D2F A;  1E2U A;  3T47 A;  3BVX A;  2EFK A;  2D4C A;  4HYB A;  4EZO A;  3RV1 A;  2F1B A;  3D52 A;  2RT6 A;  1HXK A;  2OZN B;  1HWW A;  2D1L A;  2ALW A;  4AZC A;  2O0I 1;  3ACO A;  3Q0K A;  1W9M A;  1OA0 A;  3DDG A;  2X3W A;  3DYT A;  3T48 A;  3OHX M;  1SU6 A;  3OK8 A;  2GA9 D;  3CZS A;  4R5K A;  3LLL A;  4JWE A;  4IM0 A;  3SYV A;  3M3W A;  1DKX A;  3LVT A;  4DYL A;  3RPM A;  5C5B A;  4ATM A;  2OBM A;  2FYV A;  3DX1 A;  4JNF A;  1TQV A;  3O3M B;  3L3P A;  3VKH A;  3VEB A;  1UPX A;  2Z0N A;  5FLE X;  3QNI A;  3BVU A;  3DX0 A;  4EZY A;  3ER9 B;  2RAI A;  4I1Q A;  4EZP A;  4UDY X;  2OW6 A;  1URU A;  1E1D A;  1I4T A;  1SU8 A;  4EZR A;  4HY9 A;  2GF4 A;  3UIT A;  2NCZ A;  4EZT A;  2GAF D;  2OW7 A;  4JWD A;  3CZN A;  3DX4 A;  2C08 A;  1JQK A;  2X3V A;  2EWF A;  3F7W A;  2YL6 A;  3DX2 A;  3GI7 A;  1OAO A;  4JNE A;  5TKY A;  5KBP A;  3CVR A;  3O3N B;  4H6H A;  3Q84 A;  4R5G A;  4B9Q A;  3KAW A;  2QKW A;  2PMR A;  1SU7 A;  3HAH A;  3BLB A;  1DKY A;  3BVV A;  2N3K A;  4FZO A;  3EJQ A;  1U00 A;  4UDX X;  4JL9 A;  3SOG A;  4IM2 A;  3T49 A;  4EZS A;  1QWU A;  2YKT A;  2YL8 A;  2Z0V A;  2Z8Y A;  2F7O A;  3A98 A;  4KIK B;  4WPC A;  4EZV A;  1R34 A;  3HAI A;  3EJP A;  4EZX A;  3BUQ A;  2YI9 A;  2LM0 A;  3BUI A;  2YLA A;  2WIN M;  3DPO A;  4HR1 A;  3BUP A;  3DDF A;  3ERC C;  3ABH A;  3D4Z A;  2KHO A;  3RV0 A;  4G6Q A;  2LXY A;  3D2E A;  5E84 A;  3DPQ A;  1I4D A;  5FIG A;  1OA1 A;  3KDR A;  3L3O M;  1ZWW A;  4JLC A;  4AVM A;  4JWI A;  3B52 X;  3D51 A;  2F7Q A;  3CAZ A;  1TQS A;  2X5C A;  2EFL A;  3QE6 A;  3B53 X;  4WPE A;  4KIK A;  1PS3 A;  3DPP A;  4PO2 A;  3D50 A;  2Z0O A;  4EZW A;  2ND1 A;  1O7D C;  4NSW A;  4EZZ A;  3VEA A;  2EX3 B;  2ND0 A;  4F00 A;  4IWP A;  2QFF A;  4IWO A;  3O3O B;  1Y2O A;  3KAV A;  3CKD A;  3I39 X;  2YIB A;  2ELB A;  4AZH A;  5C5B B;  4NPH A;  3BVT A;  3I2W A;  2OO2 A;  4FM3 A;  1WDZ A;  4IWQ A;  3OWG A;  4AZ7 A;  2Q12 A;  1HTY A;  1DKZ A;  4F01 A;  4IW0 A;  3ER8 C;  1QWN A;  3C7N A;  1GNT A;  4E3C A;  2FIC A;  4AZG A;  1I49 A;  4NQI A;  2F18 A;  1SUF A;  3I01 A;  1MJG A;  3DX3 A;  3B51 X;  1X04 A;  2QXL A;  2YIV X;  2YL9 A;  1R33 A;  2RAJ A;  4JN4 A;  2WYH A;  4DCN C;  2F1A A;  3QA8 A;  2OBL A;  4FZS A;  1I4L A;  4AZ6 A;  3EJT A;  3EJU A;  3CV5 A;  3HAJ A;  1TQW A;  4M0M A;  2X3X A;  3BUD A;  4E81 A;  1X03 A;  4R5L A;  4AKV A;  2YIA A;  4JWC A;  3BUB A;  3FD9 A;  3LMF A;  2RAK A;  4IM3 A;  4D8J A;  1YWM A;  4AZB A;  1TQT A;  2WYI A;  1GN9 A;  3D4Y A;  1QX1 A;  4R5I A;  4AZC B;  4R5J A;  3BVW A;  2Q13 A;  2JNS A;  2V0O A;  3PLT A;  2YLL A;  1E9V A;  3G9G A;  3EJR A;  3QWE A;  2JNK A;  2YL5 A;  1R5E A;  4EZU A;  2YI8 A;  1TQU A;  1GNL A;  4AZI A;  2MI7 A;  3I04 A; 
#chains in the Genus database with same CATH homology
 1X03 A;  4BNE A;  2Z0V A;  2ELB A;  2X3V A;  1URU A;  5C5B B;  4AKV A;  2Q13 A;  2RAJ A;  3ABH A;  2Z0O A;  3HAH A;  2FIC A;  4AVM A;  2V0O A;  3PLT A;  1I4T A;  3G9G A;  3OK8 A;  4DCN C;  1I49 A;  2RAK A;  4NQI A;  3LLL A;  4NSW A;  4WPC A;  2Z0N A;  3QNI A;  3QWE A;  4H8S A;  4FZS A;  3SOG A;  3HAI A;  3I2W A;  2D1L A;  1I4L A;  1WDZ A;  3CAZ A;  1X04 A;  2Q12 A;  2EFK A;  3ACO A;  3M3W A;  2D4C A;  3Q0K A;  3Q84 A;  1I4D A;  3SYV A;  3HAJ A;  2EFL A;  4DYL A;  5C5B A;  3QE6 A;  1Y2O A;  2X3W A;  4ATM A;  3DYT A;  2YKT A;  2RAI A;  2X3X A;  4I1Q A;  4WPE A;  1ZWW A;  2C08 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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