4WPCA

Crystal structure of rgd1p f-bar domain in complex with inositol phosphate
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
297
structure length
283
Chain Sequence
b'FSTPEIKKVLNSDVAINALLSRLKQSLLTCEEFMKFIRKKYAFEEEHVQELSKQYKHFFNIQNSSLKKMIHEVLGFDGKMAQVKQSYITALQKMYSEISSLLLTMTKLRKSVKENSKRLEKDVSDAIHSAEKAQSRYNSLCQDWDKLRKTKLTLRGSKTTKEQEEELLRKIDNADLEYKQKVDHSNSLRNTFITKERPRIVQELKDLILEIDTAMTIQLQKYTIWTENLVLNTGVTISPLDSTKSMKSFAGSVSNERDLYSFLNKYNQLINKNLIPVSYKKHP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RHO GTPase-activating protein RGD1
publication title Comparison of Saccharomyces cerevisiae F-BAR Domain Structures Reveals a Conserved Inositol Phosphate Binding Site.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Lipid binding protein
total genus 112
structure length 283
sequence length 297
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-10-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4wpcA00
1WDZA 3HAIA 3LLLA 4WPEA 2YKTA 1Y2OA 2D4CA 2EFLA 3M3WA 3OK8A 3Q0KA 3QE6A 2FICA 3SOGA 3QWEA 5C5BB 4NSWA 3HAHA 3I2WA 4ATMA 4DCNC 3Q84A 1ZWWA 2X3XA 1I4LA 4AKVA 3SYVA 3HAJA 3DYTA 2Z0OA 4I1QA 3G9GA 5C5BA 2Q13A 1X03A 3CAZA 2RAJA 2RAIA 2Z0VA 2EFKA 2V0OA 2C08A 3QNIA 2ELBA 1I4DA 3ABHA 4AVMA 4BNEA 4DYLA 1I4TA 4FZSA 3ACOA 2X3WA 2RAKA 2Q12A 4H8SA 1I49A 2X3VA 4WPCA 1URUA 2D1LA 4NQIA 3PLTA 2Z0NA 1X04A
chains in the Genus database with same CATH superfamily
3HAIA 1E1DA 2JNKA 3Q0KA 3CVRA 5FIGA 2YIBA 1GNLA 4DYLA 3BUBA 1I4TA 3BUIA 4E3CA 1MJGA 4EZYA 2WYIA 3BVVA 3O3NB 1TQUA 4I1QA 3I04A 1WDZA 4WPEA 4FZPA 2YIVX 2MI7A 3DPPA 3BUQA 4EZTA 3QNJA 1QWUA 3D50A 3D2FA 3T48A 4EZSA 3D4ZA 4FZSA 2Q12A 1SU6A 2ALWA 2Z0NA 4IM0A 1R34A 3BLBA 4NPHA 1O7DC 4G6QA 3RPMA 1R33A 3EJSA 3D52A 2Z0VA 2EFKA 2RAKA 5KBPA 1HTYA 2F18A 3A98A 2OBMA 2OZNB 3QE6A 3KAWA 4JNEA 3SOGA 4AZCA 1SUFA 4JWIA 2Z0OA 3G9GA 4IW0A 1SU8A 1YWMA 3ABHA 1QX1A 3BUDA 3I01A 4WPCA 2X5CA 3DPOA 2LXYA 3ER9B 4PO2A 2YI9A 3BVUA 3OK8A 3D51A 3C7NA 4KIKB 2YL8A 3DPQA 3VEAA 3FD9A 1DKZA 4JN4A 4FM3A 3D2EA 2WYHA 3CZSA 4JWEA 4EZOA 1TQSA 4B9QA 1TQVA 3DDFA 3EJQA 1I4LA 3HAJA 1ZYLA 2F7RA 4HY9A 1JQKA 3I39X 2EWFA 4AVMA 1DKYA 3ERCC 3ZEDA 2EX3B 1TQWA 2JNSA 3BVXA 2Z8YA 3B53X 1Y2OA 3O3MB 4M0MA 4EZNA 4AZ5A 3EJRA 4ATMA 1ZWWA 2GF4A 2X3XA 4JL9A 3BUPA 3ACOA 4R5JA 2PMRA 3DX0A 2YLAA 3BVTA 2OW7A 4IWQA 2PY6A 3HAHA 2FYVA 2ND1A 3SYVA 3DX4A 4R5IA 4EZPA 3ER8C 1QWNA 2QKWA 2KHOA 3QNIA 1I4DA 3CKDA 2N3KA 2X3WA 1I49A 4H6HA 3EJTA 4UDYX 3T49A 3OWGA 3LLLA 4EZWA 2F1AA 4NSWA 3DYTA 5C5BA 2YLLA 1W9MA 4R5GA 1HWWA 2ND0A 1X04A 3RV0A 2RT6A 3M3WA 2GA9D 3T4AG 4HR1B 1PS3A 2F7PA 3CAZA 3KAVA 4FZOA 3F7WA 4AZIA 4EZXA 1E9VA 2F7OA 2YKTA 4IM2A 2QFFA 4JNFA 2O0I1 4AKVA 3CZNA 2NCZA 3LVTA 2Q13A 2RAJA 4IWPA 2OO2A 3VEBA 2OBLA 3CV5A 4AZ6A 3B52X 5E84A 1GNTA 2FICA 3BVWA 4EZZA 3QA8A 4R5KA 4D8JA 3DX2A 2YI8A 4AZGA 5TKYA 3GI7A 3VKHA 1R5EA 1SU7A 4R5LA 3QWEA 3I2WA 3L3PA 3Q84A 1TQTA 1OAOA 3B51X 3DX1A 1X03A 1GN9A 2V0OA 4H6IA 3KDRA 1OA0A 2X3VA 3PLTA 1DKXA 2ZXQA 3T46A 3DX3A 2D4CA 2EFLA 2YL9A 3EJPA 2F1BA 2WINM 3D4YA 4HR1A 2RAIA 3OHXM 4BNEA 4KIKA 1LQ7A 3EJUA 4H8SA 4E81A 4AZ7A 4EZVA 1UPXA 1URUA 1OA1A 4UDXX 5FLEX 3LMFA 4AZBA 4JWDA 1E2UA 3O3OB 4DCNC 1HXKA 2OW6A 3T47A 2LM0A 3DDGA 2ELBA 3RV1A 2F7QA 4IM3A 2D1LA 4AZHA 4EZUA 4HYBA 3L3OM 4IWOA 1U00A 4AZCB 4JLCA 2YL6A 2YIAA 5C5BB 4EZRA 1O7DB 3UITA 2C08A 2YL5A 4EZQA 4JWCA 4F01A 2GAFD 4NQIA 4F00A 2QXLA
chains in the Genus database with same CATH topology
1WDZA 3HAIA 3LLLA 4WPEA 2YKTA 1Y2OA 2D4CA 2EFLA 3M3WA 3OK8A 3Q0KA 3QE6A 2FICA 3SOGA 3QWEA 5C5BB 4NSWA 3HAHA 3I2WA 4ATMA 4DCNC 3Q84A 1ZWWA 2X3XA 1I4LA 4AKVA 3SYVA 3HAJA 3DYTA 2Z0OA 4I1QA 3G9GA 5C5BA 2Q13A 1X03A 3CAZA 2RAJA 2RAIA 2Z0VA 2EFKA 2V0OA 2C08A 3QNIA 2ELBA 1I4DA 3ABHA 4AVMA 4BNEA 4DYLA 1I4TA 4FZSA 3ACOA 2X3WA 2RAKA 2Q12A 4H8SA 1I49A 2X3VA 4WPCA 1URUA 2D1LA 4NQIA 3PLTA 2Z0NA 1X04A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WDZ A;  3HAI A;  3LLL A;  4WPE A;  2YKT A;  1Y2O A;  2D4C A;  2EFL A;  3M3W A;  3OK8 A;  3Q0K A;  3QE6 A;  2FIC A;  3SOG A;  3QWE A;  5C5B B;  4NSW A;  3HAH A;  3I2W A;  4ATM A;  4DCN C;  3Q84 A;  1ZWW A;  2X3X A;  1I4L A;  4AKV A;  3SYV A;  3HAJ A;  3DYT A;  2Z0O A;  4I1Q A;  3G9G A;  5C5B A;  2Q13 A;  1X03 A;  3CAZ A;  2RAJ A;  2RAI A;  2Z0V A;  2EFK A;  2V0O A;  2C08 A;  3QNI A;  2ELB A;  1I4D A;  3ABH A;  4AVM A;  4BNE A;  4DYL A;  1I4T A;  4FZS A;  3ACO A;  2X3W A;  2RAK A;  2Q12 A;  4H8S A;  1I49 A;  2X3V A;  4WPC A;  1URU A;  2D1L A;  4NQI A;  3PLT A;  2Z0N A;  1X04 A; 
#chains in the Genus database with same CATH topology
 3HAI A;  1E1D A;  2JNK A;  3Q0K A;  3CVR A;  5FIG A;  2YIB A;  1GNL A;  4DYL A;  3BUB A;  1I4T A;  3BUI A;  4E3C A;  1MJG A;  4EZY A;  2WYI A;  3BVV A;  3O3N B;  1TQU A;  4I1Q A;  3I04 A;  1WDZ A;  4WPE A;  4FZP A;  2YIV X;  2MI7 A;  3DPP A;  3BUQ A;  4EZT A;  3QNJ A;  1QWU A;  3D50 A;  3D2F A;  3T48 A;  4EZS A;  3D4Z A;  4FZS A;  2Q12 A;  1SU6 A;  2ALW A;  2Z0N A;  4IM0 A;  1R34 A;  3BLB A;  4NPH A;  1O7D C;  4G6Q A;  3RPM A;  1R33 A;  3EJS A;  3D52 A;  2Z0V A;  2EFK A;  2RAK A;  5KBP A;  1HTY A;  2F18 A;  3A98 A;  2OBM A;  2OZN B;  3QE6 A;  3KAW A;  4JNE A;  3SOG A;  4AZC A;  1SUF A;  4JWI A;  2Z0O A;  3G9G A;  4IW0 A;  1SU8 A;  1YWM A;  3ABH A;  1QX1 A;  3BUD A;  3I01 A;  4WPC A;  2X5C A;  3DPO A;  2LXY A;  3ER9 B;  4PO2 A;  2YI9 A;  3BVU A;  3OK8 A;  3D51 A;  3C7N A;  4KIK B;  2YL8 A;  3DPQ A;  3VEA A;  3FD9 A;  1DKZ A;  4JN4 A;  4FM3 A;  3D2E A;  2WYH A;  3CZS A;  4JWE A;  4EZO A;  1TQS A;  4B9Q A;  1TQV A;  3DDF A;  3EJQ A;  1I4L A;  3HAJ A;  1ZYL A;  2F7R A;  4HY9 A;  1JQK A;  3I39 X;  2EWF A;  4AVM A;  1DKY A;  3ERC C;  3ZED A;  2EX3 B;  1TQW A;  2JNS A;  3BVX A;  2Z8Y A;  3B53 X;  1Y2O A;  3O3M B;  4M0M A;  4EZN A;  4AZ5 A;  3EJR A;  4ATM A;  1ZWW A;  2GF4 A;  2X3X A;  4JL9 A;  3BUP A;  3ACO A;  4R5J A;  2PMR A;  3DX0 A;  2YLA A;  3BVT A;  2OW7 A;  4IWQ A;  2PY6 A;  3HAH A;  2FYV A;  2ND1 A;  3SYV A;  3DX4 A;  4R5I A;  4EZP A;  3ER8 C;  1QWN A;  2QKW A;  2KHO A;  3QNI A;  1I4D A;  3CKD A;  2N3K A;  2X3W A;  1I49 A;  4H6H A;  3EJT A;  4UDY X;  3T49 A;  3OWG A;  3LLL A;  4EZW A;  2F1A A;  4NSW A;  3DYT A;  5C5B A;  2YLL A;  1W9M A;  4R5G A;  1HWW A;  2ND0 A;  1X04 A;  3RV0 A;  2RT6 A;  3M3W A;  2GA9 D;  3T4A G;  4HR1 B;  1PS3 A;  2F7P A;  3CAZ A;  3KAV A;  4FZO A;  3F7W A;  4AZI A;  4EZX A;  1E9V A;  2F7O A;  2YKT A;  4IM2 A;  2QFF A;  4JNF A;  2O0I 1;  4AKV A;  3CZN A;  2NCZ A;  3LVT A;  2Q13 A;  2RAJ A;  4IWP A;  2OO2 A;  3VEB A;  2OBL A;  3CV5 A;  4AZ6 A;  3B52 X;  5E84 A;  1GNT A;  2FIC A;  3BVW A;  4EZZ A;  3QA8 A;  4R5K A;  4D8J A;  3DX2 A;  2YI8 A;  4AZG A;  5TKY A;  3GI7 A;  3VKH A;  1R5E A;  1SU7 A;  4R5L A;  3QWE A;  3I2W A;  3L3P A;  3Q84 A;  1TQT A;  1OAO A;  3B51 X;  3DX1 A;  1X03 A;  1GN9 A;  2V0O A;  4H6I A;  3KDR A;  1OA0 A;  2X3V A;  3PLT A;  1DKX A;  2ZXQ A;  3T46 A;  3DX3 A;  2D4C A;  2EFL A;  2YL9 A;  3EJP A;  2F1B A;  2WIN M;  3D4Y A;  4HR1 A;  2RAI A;  3OHX M;  4BNE A;  4KIK A;  1LQ7 A;  3EJU A;  4H8S A;  4E81 A;  4AZ7 A;  4EZV A;  1UPX A;  1URU A;  1OA1 A;  4UDX X;  5FLE X;  3LMF A;  4AZB A;  4JWD A;  1E2U A;  3O3O B;  4DCN C;  1HXK A;  2OW6 A;  3T47 A;  2LM0 A;  3DDG A;  2ELB A;  3RV1 A;  2F7Q A;  4IM3 A;  2D1L A;  4AZH A;  4EZU A;  4HYB A;  3L3O M;  4IWO A;  1U00 A;  4AZC B;  4JLC A;  2YL6 A;  2YIA A;  5C5B B;  4EZR A;  1O7D B;  3UIT A;  2C08 A;  2YL5 A;  4EZQ A;  4JWC A;  4F01 A;  2GAF D;  4NQI A;  4F00 A;  2QXL A; 
#chains in the Genus database with same CATH homology
 1WDZ A;  3HAI A;  3LLL A;  4WPE A;  2YKT A;  1Y2O A;  2D4C A;  2EFL A;  3M3W A;  3OK8 A;  3Q0K A;  3QE6 A;  2FIC A;  3SOG A;  3QWE A;  5C5B B;  4NSW A;  3HAH A;  3I2W A;  4ATM A;  4DCN C;  3Q84 A;  1ZWW A;  2X3X A;  1I4L A;  4AKV A;  3SYV A;  3HAJ A;  3DYT A;  2Z0O A;  4I1Q A;  3G9G A;  5C5B A;  2Q13 A;  1X03 A;  3CAZ A;  2RAJ A;  2RAI A;  2Z0V A;  2EFK A;  2V0O A;  2C08 A;  3QNI A;  2ELB A;  1I4D A;  3ABH A;  4AVM A;  4BNE A;  4DYL A;  1I4T A;  4FZS A;  3ACO A;  2X3W A;  2RAK A;  2Q12 A;  4H8S A;  1I49 A;  2X3V A;  4WPC A;  1URU A;  2D1L A;  4NQI A;  3PLT A;  2Z0N A;  1X04 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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