4WPCA

Crystal structure of rgd1p f-bar domain in complex with inositol phosphate
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
297
structure length
283
Chain Sequence
FSTPEIKKVLNSDVAINALLSRLKQSLLTCEEFMKFIRKKYAFEEEHVQELSKQYKHFFNIQNSSLKKMIHEVLGFDGKMAQVKQSYITALQKMYSEISSLLLTMTKLRKSVKENSKRLEKDVSDAIHSAEKAQSRYNSLCQDWDKLRKTKLTLRGSKTTKEQEEELLRKIDNADLEYKQKVDHSNSLRNTFITKERPRIVQELKDLILEIDTAMTIQLQKYTIWTENLVLNTGVTISPLDSTKSMKSFAGSVSNERDLYSFLNKYNQLINKNLIPVSYKKHP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RHO GTPase-activating protein RGD1
publication title Comparison of Saccharomyces cerevisiae F-BAR Domain Structures Reveals a Conserved Inositol Phosphate Binding Site.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Lipid binding protein
total genus 112
structure length 283
sequence length 297
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-10-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4wpcA00
5C5BB 3PLTA 1I49A 3LLLA 1I4DA 3QNIA 4DYLA 3ABHA 2C08A 4BNEA 4NSWA 2D4CA 4AKVA 4WPEA 4NQIA 4H8SA 3G9GA 3ACOA 1ZWWA 2RAIA 2Z0OA 2YKTA 3HAHA 2X3XA 2RAJA 2Z0VA 4DCNC 2Q13A 3HAIA 3Q84A 2FICA 1URUA 5C5BA 2EFLA 2EFKA 1I4LA 3M3WA 2D1LA 4AVMA 4ATMA 3Q0KA 1X04A 2X3WA 4WPCA 2Q12A 1I4TA 2Z0NA 3CAZA 1WDZA 3QWEA 3QE6A 2X3VA 2RAKA 2V0OA 3OK8A 4FZSA 4I1QA 3SOGA 3SYVA 3I2WA 1Y2OA 3HAJA 1X03A 3DYTA 2ELBA
chains in the Genus database with same CATH superfamily
3D52A 2O0I1 3EJSA 1HTYA 1TQUA 2Z0OA 2N3KA 3Q84A 1DKXA 3I01A 4EZVA 2OW6A 1I4TA 1GNLA 2RT6A 4R5GA 4FZPA 1JQKA 4AZGA 1R34A 3VKHA 1SUFA 5TKYA 1QX1A 3M3WA 4KIKB 3D2EA 2Z0NA 1ZYLA 4JNEA 1TQVA 2WYIA 4EZSA 3CZNA 3L3PA 1PS3A 4KIKA 4EZZA 1GN9A 4FZOA 2ND1A 3BVWA 3EJPA 4R5JA 1UPXA 5C5BA 2EFKA 2ND0A 3BVUA 4I1QA 2QXLA 3A98A 2PMRA 3PLTA 3BUDA 2PY6A 3VEAA 2YL6A 3DX4A 4WPEA 3B51X 3QNJA 3BUBA 3KDRA 2F1BA 3BVXA 3UITA 3DX0A 2EFLA 3ZEDA 2X3WA 2WYHA 2JNKA 1HWWA 4UDYX 4AZCA 3T48A 1U00A 3QNIA 2X5CA 4DYLA 2ALWA 4BNEA 3CVRA 4NSWA 3BVVA 3O3MB 3BVTA 2OO2A 2YIBA 1QWNA 3EJQA 1DKZA 1YWMA 4EZYA 2D1LA 3I2WA 4AZHA 5KBPA 4JWDA 3EJTA 4B9QA 2QFFA 3OHXM 1GNTA 3F7WA 3DDGA 3KAVA 4UDXX 1I4LA 2YL5A 2GF4A 2Q12A 2WINM 3RV1A 3DPOA 2EWFA 1E2UA 3DDFA 2JNSA 3KAWA 1I4DA 2FYVA 3D51A 2YL9A 2Z8YA 4JNFA 3D4ZA 3VEBA 3EJUA 5FLEX 2QKWA 1WDZA 2V0OA 3O3OB 1SU7A 3HAJA 3QA8A 4HY9A 3DYTA 1E1DA 5C5BB 1DKYA 4IWOA 1E9VA 4H8SA 3O3NB 1ZWWA 4D8JA 4R5IA 2YLLA 4H6IA 3B52X 3CAZA 2OW7A 3I04A 3SOGA 4EZRA 2KHOA 3CKDA 3DX2A 3B53X 4HR1B 3G9GA 3BUIA 4AZCB 4EZTA 2GAFD 4AZBA 4AZ6A 2F7OA 3DX3A 3D4YA 4M0MA 4AKVA 3QE6A 4HR1A 1Y2OA 1X03A 3T47A 2F18A 2ELBA 3C7NA 2F7QA 4JWEA 3EJRA 3D50A 3HAHA 2Z0VA 3HAIA 4IM2A 4F00A 4JLCA 4F01A 1R5EA 1X04A 3LMFA 4WPCA 1HXKA 2RAKA 3OK8A 3LVTA 2OZNB 4IW0A 2LM0A 4HYBA 2F1AA 4JWIA 2RAIA 2EX3B 3DPQA 1O7DC 4PO2A 1SU6A 2F7RA 2YIAA 3I39X 3D2FA 2X3VA 3BUQA 4R5LA 4AZ7A 1QWUA 3ERCC 2YI9A 4EZNA 2F7PA 2D4CA 2OBLA 4IWPA 3T46A 3BUPA 1O7DB 4H6HA 1W9MA 3ER8C 2GA9D 4EZWA 2YLAA 4AZIA 4AZ5A 4AVMA 2C08A 1LQ7A 3ER9B 2OBMA 2RAJA 4EZQA 1URUA 1TQWA 4EZOA 1SU8A 4JWCA 3Q0KA 1R33A 4JN4A 3OWGA 3DPPA 4IWQA 4EZPA 2LXYA 2YIVX 2YI8A 4EZUA 4NQIA 3ACOA 2YKTA 3RV0A 2X3XA 4DCNC 2Q13A 3RPMA 4E81A 4ATMA 1TQSA 1OAOA 4FZSA 3CV5A 3DX1A 1I49A 3LLLA 4G6QA 3L3OM 4NPHA 4FM3A 2MI7A 2ZXQA 3T49A 3SYVA 2NCZA 3CZSA 3ABHA 1TQTA 3GI7A 1OA1A 3BLBA 3FD9A 1MJGA 4JL9A 4E3CA 4EZXA 2FICA 1OA0A 2YL8A 3QWEA 4IM3A 5E84A 4IM0A 4R5KA 5FIGA 3T4AG
chains in the Genus database with same CATH topology
5C5BB 3PLTA 1I49A 3LLLA 1I4DA 3QNIA 4DYLA 3ABHA 2C08A 4BNEA 4NSWA 2D4CA 4AKVA 4WPEA 4NQIA 4H8SA 3G9GA 3ACOA 1ZWWA 2RAIA 2Z0OA 2YKTA 3HAHA 2X3XA 2RAJA 2Z0VA 4DCNC 2Q13A 3HAIA 3Q84A 2FICA 1URUA 5C5BA 2EFLA 2EFKA 1I4LA 3M3WA 2D1LA 4AVMA 4ATMA 3Q0KA 1X04A 2X3WA 4WPCA 2Q12A 1I4TA 2Z0NA 3CAZA 1WDZA 3QWEA 3QE6A 2X3VA 2RAKA 2V0OA 3OK8A 4FZSA 4I1QA 3SOGA 3SYVA 3I2WA 1Y2OA 3HAJA 1X03A 3DYTA 2ELBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C5B B;  3PLT A;  1I49 A;  3LLL A;  1I4D A;  3QNI A;  4DYL A;  3ABH A;  2C08 A;  4BNE A;  4NSW A;  2D4C A;  4AKV A;  4WPE A;  4NQI A;  4H8S A;  3G9G A;  3ACO A;  1ZWW A;  2RAI A;  2Z0O A;  2YKT A;  3HAH A;  2X3X A;  2RAJ A;  2Z0V A;  4DCN C;  2Q13 A;  3HAI A;  3Q84 A;  2FIC A;  1URU A;  5C5B A;  2EFL A;  2EFK A;  1I4L A;  3M3W A;  2D1L A;  4AVM A;  4ATM A;  3Q0K A;  1X04 A;  2X3W A;  4WPC A;  2Q12 A;  1I4T A;  2Z0N A;  3CAZ A;  1WDZ A;  3QWE A;  3QE6 A;  2X3V A;  2RAK A;  2V0O A;  3OK8 A;  4FZS A;  4I1Q A;  3SOG A;  3SYV A;  3I2W A;  1Y2O A;  3HAJ A;  1X03 A;  3DYT A;  2ELB A; 
#chains in the Genus database with same CATH topology
 3D52 A;  2O0I 1;  3EJS A;  1HTY A;  1TQU A;  2Z0O A;  2N3K A;  3Q84 A;  1DKX A;  3I01 A;  4EZV A;  2OW6 A;  1I4T A;  1GNL A;  2RT6 A;  4R5G A;  4FZP A;  1JQK A;  4AZG A;  1R34 A;  3VKH A;  1SUF A;  5TKY A;  1QX1 A;  3M3W A;  4KIK B;  3D2E A;  2Z0N A;  1ZYL A;  4JNE A;  1TQV A;  2WYI A;  4EZS A;  3CZN A;  3L3P A;  1PS3 A;  4KIK A;  4EZZ A;  1GN9 A;  4FZO A;  2ND1 A;  3BVW A;  3EJP A;  4R5J A;  1UPX A;  5C5B A;  2EFK A;  2ND0 A;  3BVU A;  4I1Q A;  2QXL A;  3A98 A;  2PMR A;  3PLT A;  3BUD A;  2PY6 A;  3VEA A;  2YL6 A;  3DX4 A;  4WPE A;  3B51 X;  3QNJ A;  3BUB A;  3KDR A;  2F1B A;  3BVX A;  3UIT A;  3DX0 A;  2EFL A;  3ZED A;  2X3W A;  2WYH A;  2JNK A;  1HWW A;  4UDY X;  4AZC A;  3T48 A;  1U00 A;  3QNI A;  2X5C A;  4DYL A;  2ALW A;  4BNE A;  3CVR A;  4NSW A;  3BVV A;  3O3M B;  3BVT A;  2OO2 A;  2YIB A;  1QWN A;  3EJQ A;  1DKZ A;  1YWM A;  4EZY A;  2D1L A;  3I2W A;  4AZH A;  5KBP A;  4JWD A;  3EJT A;  4B9Q A;  2QFF A;  3OHX M;  1GNT A;  3F7W A;  3DDG A;  3KAV A;  4UDX X;  1I4L A;  2YL5 A;  2GF4 A;  2Q12 A;  2WIN M;  3RV1 A;  3DPO A;  2EWF A;  1E2U A;  3DDF A;  2JNS A;  3KAW A;  1I4D A;  2FYV A;  3D51 A;  2YL9 A;  2Z8Y A;  4JNF A;  3D4Z A;  3VEB A;  3EJU A;  5FLE X;  2QKW A;  1WDZ A;  2V0O A;  3O3O B;  1SU7 A;  3HAJ A;  3QA8 A;  4HY9 A;  3DYT A;  1E1D A;  5C5B B;  1DKY A;  4IWO A;  1E9V A;  4H8S A;  3O3N B;  1ZWW A;  4D8J A;  4R5I A;  2YLL A;  4H6I A;  3B52 X;  3CAZ A;  2OW7 A;  3I04 A;  3SOG A;  4EZR A;  2KHO A;  3CKD A;  3DX2 A;  3B53 X;  4HR1 B;  3G9G A;  3BUI A;  4AZC B;  4EZT A;  2GAF D;  4AZB A;  4AZ6 A;  2F7O A;  3DX3 A;  3D4Y A;  4M0M A;  4AKV A;  3QE6 A;  4HR1 A;  1Y2O A;  1X03 A;  3T47 A;  2F18 A;  2ELB A;  3C7N A;  2F7Q A;  4JWE A;  3EJR A;  3D50 A;  3HAH A;  2Z0V A;  3HAI A;  4IM2 A;  4F00 A;  4JLC A;  4F01 A;  1R5E A;  1X04 A;  3LMF A;  4WPC A;  1HXK A;  2RAK A;  3OK8 A;  3LVT A;  2OZN B;  4IW0 A;  2LM0 A;  4HYB A;  2F1A A;  4JWI A;  2RAI A;  2EX3 B;  3DPQ A;  1O7D C;  4PO2 A;  1SU6 A;  2F7R A;  2YIA A;  3I39 X;  3D2F A;  2X3V A;  3BUQ A;  4R5L A;  4AZ7 A;  1QWU A;  3ERC C;  2YI9 A;  4EZN A;  2F7P A;  2D4C A;  2OBL A;  4IWP A;  3T46 A;  3BUP A;  1O7D B;  4H6H A;  1W9M A;  3ER8 C;  2GA9 D;  4EZW A;  2YLA A;  4AZI A;  4AZ5 A;  4AVM A;  2C08 A;  1LQ7 A;  3ER9 B;  2OBM A;  2RAJ A;  4EZQ A;  1URU A;  1TQW A;  4EZO A;  1SU8 A;  4JWC A;  3Q0K A;  1R33 A;  4JN4 A;  3OWG A;  3DPP A;  4IWQ A;  4EZP A;  2LXY A;  2YIV X;  2YI8 A;  4EZU A;  4NQI A;  3ACO A;  2YKT A;  3RV0 A;  2X3X A;  4DCN C;  2Q13 A;  3RPM A;  4E81 A;  4ATM A;  1TQS A;  1OAO A;  4FZS A;  3CV5 A;  3DX1 A;  1I49 A;  3LLL A;  4G6Q A;  3L3O M;  4NPH A;  4FM3 A;  2MI7 A;  2ZXQ A;  3T49 A;  3SYV A;  2NCZ A;  3CZS A;  3ABH A;  1TQT A;  3GI7 A;  1OA1 A;  3BLB A;  3FD9 A;  1MJG A;  4JL9 A;  4E3C A;  4EZX A;  2FIC A;  1OA0 A;  2YL8 A;  3QWE A;  4IM3 A;  5E84 A;  4IM0 A;  4R5K A;  5FIG A;  3T4A G; 
#chains in the Genus database with same CATH homology
 5C5B B;  3PLT A;  1I49 A;  3LLL A;  1I4D A;  3QNI A;  4DYL A;  3ABH A;  2C08 A;  4BNE A;  4NSW A;  2D4C A;  4AKV A;  4WPE A;  4NQI A;  4H8S A;  3G9G A;  3ACO A;  1ZWW A;  2RAI A;  2Z0O A;  2YKT A;  3HAH A;  2X3X A;  2RAJ A;  2Z0V A;  4DCN C;  2Q13 A;  3HAI A;  3Q84 A;  2FIC A;  1URU A;  5C5B A;  2EFL A;  2EFK A;  1I4L A;  3M3W A;  2D1L A;  4AVM A;  4ATM A;  3Q0K A;  1X04 A;  2X3W A;  4WPC A;  2Q12 A;  1I4T A;  2Z0N A;  3CAZ A;  1WDZ A;  3QWE A;  3QE6 A;  2X3V A;  2RAK A;  2V0O A;  3OK8 A;  4FZS A;  4I1Q A;  3SOG A;  3SYV A;  3I2W A;  1Y2O A;  3HAJ A;  1X03 A;  3DYT A;  2ELB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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