4WPEA

Crystal structure of hof1p f-bar domain
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
275
structure length
275
Chain Sequence
HSYSYEACFWDPNDNGVNILLGHISQGIRSCDSMILFFKQRSELEKDYARRLGAITGKLDKDIGTNMDYGKLNETFNVVLSVEKARAQSHSKQSEILFRQIYTDTKAFAANLQARYTTLSGKIERLRMDKFNKKKGCEVLQKKLQDAQIRFRDLQLNENNMIGAKRVEHNKRELLKWESNSQEYKVQLDVLKQEYKASQKFWIHEWAQLSCELQEMENARISFLQSKLQQFATSSMETYILEQTKMDMLTNHLNSFTAADEISTFSKENGTGRLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Cytokinesis protein 2
publication title Comparison of Saccharomyces cerevisiae F-BAR Domain Structures Reveals a Conserved Inositol Phosphate Binding Site.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Protein binding
total genus 118
structure length 275
sequence length 275
ec nomenclature
pdb deposition date 2014-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4wpeA00
4ATMA 2X3VA 1WDZA 2RAKA 3DYTA 2EFLA 3Q0KA 3M3WA 4WPEA 2EFKA 3HAHA 3CAZA 4H8SA 2C08A 4FZSA 2ELBA 4NQIA 4WPCA 2V0OA 4DYLA 2Z0NA 1I4LA 1I4DA 1ZWWA 1I4TA 2D4CA 1URUA 2Q12A 2X3WA 3ACOA 1X04A 1I49A 2X3XA 3ABHA 4BNEA 4I1QA 3I2WA 2Q13A 3Q84A 4DCNC 2FICA 4AVMA 3OK8A 3SOGA 2RAJA 1Y2OA 3LLLA 4NSWA 4AKVA 5C5BA 3QWEA 2D1LA 2Z0OA 3HAIA 3PLTA 3HAJA 3SYVA 3QNIA 1X03A 3G9GA 2YKTA 2Z0VA 5C5BB 2RAIA 3QE6A
chains in the Genus database with same CATH superfamily
4JWDA 4F01A 1O7DC 4EZSA 3GI7A 1ZYLA 2Z0NA 4FM3A 2F18A 1GNTA 1TQUA 4FZPA 3D51A 4HYBA 4UDYX 2X5CA 4E81A 1TQWA 4HR1B 2GAFD 4ATMA 2WINM 1R5EA 2RAKA 2F7RA 1UPXA 4AZCB 1TQTA 1SU8A 2RT6A 4AVMA 1DKYA 2KHOA 2QFFA 3QNIA 3G9GA 3SYVA 3LMFA 3CZSA 4JLCA 3LVTA 3HAHA 3ZEDA 3DPOA 2C08A 1OA1A 1HXKA 3CV5A 3T48A 4EZYA 2O0I1 4DCNC 4AZ6A 3D52A 3LLLA 4AKVA 4R5KA 3EJUA 4WPEA 4R5GA 4PO2A 3D2EA 4JN4A 4JNFA 3ER8C 3RPMA 4AZGA 3ABHA 3EJQA 2PY6A 2PMRA 4R5LA 1SU6A 4JWCA 4IWQA 3RV0A 3PLTA 3BVUA 3DDGA 4FZSA 3I01A 2V0OA 2YLAA 2QKWA 1E1DA 3T46A 2OBMA 2YIBA 4IM3A 1R34A 3DX0A 3VEBA 1E2UA 2EFLA 3O3NB 2YIAA 4EZTA 1GN9A 4UDXX 3BVTA 4KIKA 3ACOA 3BUPA 5FIGA 2OW6A 4IM0A 3EJSA 5C5BA 4JNEA 1LQ7A 1X03A 3QNJA 2LM0A 3VKHA 2GA9D 4WPCA 1URUA 2Q12A 3L3PA 2OBLA 4EZNA 3DPQA 3O3MB 4JL9A 3SOGA 1R33A 2JNKA 3EJTA 1DKZA 1QX1A 2YI8A 5KBPA 2YLLA 2F7QA 2X3VA 3FD9A 1MJGA 4H8SA 3C7NA 2D4CA 2EX3B 2OO2A 1TQSA 5FLEX 4BNEA 2Q13A 4KIKB 2FICA 3O3OB 5E84A 3ERCC 2F7OA 3QA8A 3BLBA 3RV1A 4NPHA 4F00A 2YKTA 3OHXM 3OK8A 4AZ7A 4EZPA 2LXYA 2YL9A 4AZIA 4NSWA 1DKXA 2OW7A 3KAWA 2F7PA 2Z0VA 3CKDA 3DX1A 2EWFA 4IWPA 2MI7A 1SUFA 1SU7A 4EZWA 4H6HA 1I4LA 4I1QA 4HR1A 3BVXA 4IWOA 2RAJA 1Y2OA 1E9VA 1OA0A 2YI9A 4FZOA 1U00A 1O7DB 3ER9B 4AZCA 2RAIA 3BUIA 4B9QA 4AZHA 4H6IA 3L3OM 4G6QA 3DX2A 2X3XA 3D4ZA 1TQVA 3QWEA 2D1LA 2Z0OA 2YL8A 3B51X 3B52X 1GNLA 2YIVX 5TKYA 4EZQA 2FYVA 3Q0KA 2F1AA 3BUQA 3CAZA 2OZNB 3CVRA 1I4TA 1I49A 1JQKA 3T49A 3BVVA 3DX4A 3DX3A 2JNSA 2F1BA 1WDZA 1HWWA 1PS3A 3M3WA 2EFKA 4DYLA 2ELBA 4EZUA 1ZWWA 2X3WA 3D50A 1QWUA 2NCZA 3I04A 2YL5A 2GF4A 3UITA 2N3KA 4EZZA 5C5BB 3F7WA 2WYHA 3CZNA 2WYIA 3DYTA 3I39X 1HTYA 4NQIA 1QWNA 1X04A 3D4YA 4E3CA 3Q84A 4JWIA 4EZVA 3BVWA 3DPPA 3HAIA 3DDFA 3B53X 4M0MA 3BUBA 3T47A 3QE6A 3BUDA 2ND1A 1I4DA 4EZOA 1OAOA 2ALWA 4HY9A 4AZ5A 2ZXQA 1YWMA 4EZXA 4IW0A 3HAJA 3T4AG 3EJPA 4IM2A 2Z8YA 3D2FA 4JWEA 3VEAA 2YL6A 3KDRA 3KAVA 4AZBA 1W9MA 3EJRA 4R5JA 3I2WA 3A98A 4EZRA 4D8JA 4R5IA 2ND0A 3OWGA 2QXLA
chains in the Genus database with same CATH topology
4ATMA 2X3VA 1WDZA 2RAKA 3DYTA 2EFLA 3Q0KA 3M3WA 4WPEA 2EFKA 3HAHA 3CAZA 4H8SA 2C08A 4FZSA 2ELBA 4NQIA 4WPCA 2V0OA 4DYLA 2Z0NA 1I4LA 1I4DA 1ZWWA 1I4TA 2D4CA 1URUA 2Q12A 2X3WA 3ACOA 1X04A 1I49A 2X3XA 3ABHA 4BNEA 4I1QA 3I2WA 2Q13A 3Q84A 4DCNC 2FICA 4AVMA 3OK8A 3SOGA 2RAJA 1Y2OA 3LLLA 4NSWA 4AKVA 5C5BA 3QWEA 2D1LA 2Z0OA 3HAIA 3PLTA 3HAJA 3SYVA 3QNIA 1X03A 3G9GA 2YKTA 2Z0VA 5C5BB 2RAIA 3QE6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ATM A;  2X3V A;  1WDZ A;  2RAK A;  3DYT A;  2EFL A;  3Q0K A;  3M3W A;  4WPE A;  2EFK A;  3HAH A;  3CAZ A;  4H8S A;  2C08 A;  4FZS A;  2ELB A;  4NQI A;  4WPC A;  2V0O A;  4DYL A;  2Z0N A;  1I4L A;  1I4D A;  1ZWW A;  1I4T A;  2D4C A;  1URU A;  2Q12 A;  2X3W A;  3ACO A;  1X04 A;  1I49 A;  2X3X A;  3ABH A;  4BNE A;  4I1Q A;  3I2W A;  2Q13 A;  3Q84 A;  4DCN C;  2FIC A;  4AVM A;  3OK8 A;  3SOG A;  2RAJ A;  1Y2O A;  3LLL A;  4NSW A;  4AKV A;  5C5B A;  3QWE A;  2D1L A;  2Z0O A;  3HAI A;  3PLT A;  3HAJ A;  3SYV A;  3QNI A;  1X03 A;  3G9G A;  2YKT A;  2Z0V A;  5C5B B;  2RAI A;  3QE6 A; 
#chains in the Genus database with same CATH topology
 4JWD A;  4F01 A;  1O7D C;  4EZS A;  3GI7 A;  1ZYL A;  2Z0N A;  4FM3 A;  2F18 A;  1GNT A;  1TQU A;  4FZP A;  3D51 A;  4HYB A;  4UDY X;  2X5C A;  4E81 A;  1TQW A;  4HR1 B;  2GAF D;  4ATM A;  2WIN M;  1R5E A;  2RAK A;  2F7R A;  1UPX A;  4AZC B;  1TQT A;  1SU8 A;  2RT6 A;  4AVM A;  1DKY A;  2KHO A;  2QFF A;  3QNI A;  3G9G A;  3SYV A;  3LMF A;  3CZS A;  4JLC A;  3LVT A;  3HAH A;  3ZED A;  3DPO A;  2C08 A;  1OA1 A;  1HXK A;  3CV5 A;  3T48 A;  4EZY A;  2O0I 1;  4DCN C;  4AZ6 A;  3D52 A;  3LLL A;  4AKV A;  4R5K A;  3EJU A;  4WPE A;  4R5G A;  4PO2 A;  3D2E A;  4JN4 A;  4JNF A;  3ER8 C;  3RPM A;  4AZG A;  3ABH A;  3EJQ A;  2PY6 A;  2PMR A;  4R5L A;  1SU6 A;  4JWC A;  4IWQ A;  3RV0 A;  3PLT A;  3BVU A;  3DDG A;  4FZS A;  3I01 A;  2V0O A;  2YLA A;  2QKW A;  1E1D A;  3T46 A;  2OBM A;  2YIB A;  4IM3 A;  1R34 A;  3DX0 A;  3VEB A;  1E2U A;  2EFL A;  3O3N B;  2YIA A;  4EZT A;  1GN9 A;  4UDX X;  3BVT A;  4KIK A;  3ACO A;  3BUP A;  5FIG A;  2OW6 A;  4IM0 A;  3EJS A;  5C5B A;  4JNE A;  1LQ7 A;  1X03 A;  3QNJ A;  2LM0 A;  3VKH A;  2GA9 D;  4WPC A;  1URU A;  2Q12 A;  3L3P A;  2OBL A;  4EZN A;  3DPQ A;  3O3M B;  4JL9 A;  3SOG A;  1R33 A;  2JNK A;  3EJT A;  1DKZ A;  1QX1 A;  2YI8 A;  5KBP A;  2YLL A;  2F7Q A;  2X3V A;  3FD9 A;  1MJG A;  4H8S A;  3C7N A;  2D4C A;  2EX3 B;  2OO2 A;  1TQS A;  5FLE X;  4BNE A;  2Q13 A;  4KIK B;  2FIC A;  3O3O B;  5E84 A;  3ERC C;  2F7O A;  3QA8 A;  3BLB A;  3RV1 A;  4NPH A;  4F00 A;  2YKT A;  3OHX M;  3OK8 A;  4AZ7 A;  4EZP A;  2LXY A;  2YL9 A;  4AZI A;  4NSW A;  1DKX A;  2OW7 A;  3KAW A;  2F7P A;  2Z0V A;  3CKD A;  3DX1 A;  2EWF A;  4IWP A;  2MI7 A;  1SUF A;  1SU7 A;  4EZW A;  4H6H A;  1I4L A;  4I1Q A;  4HR1 A;  3BVX A;  4IWO A;  2RAJ A;  1Y2O A;  1E9V A;  1OA0 A;  2YI9 A;  4FZO A;  1U00 A;  1O7D B;  3ER9 B;  4AZC A;  2RAI A;  3BUI A;  4B9Q A;  4AZH A;  4H6I A;  3L3O M;  4G6Q A;  3DX2 A;  2X3X A;  3D4Z A;  1TQV A;  3QWE A;  2D1L A;  2Z0O A;  2YL8 A;  3B51 X;  3B52 X;  1GNL A;  2YIV X;  5TKY A;  4EZQ A;  2FYV A;  3Q0K A;  2F1A A;  3BUQ A;  3CAZ A;  2OZN B;  3CVR A;  1I4T A;  1I49 A;  1JQK A;  3T49 A;  3BVV A;  3DX4 A;  3DX3 A;  2JNS A;  2F1B A;  1WDZ A;  1HWW A;  1PS3 A;  3M3W A;  2EFK A;  4DYL A;  2ELB A;  4EZU A;  1ZWW A;  2X3W A;  3D50 A;  1QWU A;  2NCZ A;  3I04 A;  2YL5 A;  2GF4 A;  3UIT A;  2N3K A;  4EZZ A;  5C5B B;  3F7W A;  2WYH A;  3CZN A;  2WYI A;  3DYT A;  3I39 X;  1HTY A;  4NQI A;  1QWN A;  1X04 A;  3D4Y A;  4E3C A;  3Q84 A;  4JWI A;  4EZV A;  3BVW A;  3DPP A;  3HAI A;  3DDF A;  3B53 X;  4M0M A;  3BUB A;  3T47 A;  3QE6 A;  3BUD A;  2ND1 A;  1I4D A;  4EZO A;  1OAO A;  2ALW A;  4HY9 A;  4AZ5 A;  2ZXQ A;  1YWM A;  4EZX A;  4IW0 A;  3HAJ A;  3T4A G;  3EJP A;  4IM2 A;  2Z8Y A;  3D2F A;  4JWE A;  3VEA A;  2YL6 A;  3KDR A;  3KAV A;  4AZB A;  1W9M A;  3EJR A;  4R5J A;  3I2W A;  3A98 A;  4EZR A;  4D8J A;  4R5I A;  2ND0 A;  3OWG A;  2QXL A; 
#chains in the Genus database with same CATH homology
 4ATM A;  2X3V A;  1WDZ A;  2RAK A;  3DYT A;  2EFL A;  3Q0K A;  3M3W A;  4WPE A;  2EFK A;  3HAH A;  3CAZ A;  4H8S A;  2C08 A;  4FZS A;  2ELB A;  4NQI A;  4WPC A;  2V0O A;  4DYL A;  2Z0N A;  1I4L A;  1I4D A;  1ZWW A;  1I4T A;  2D4C A;  1URU A;  2Q12 A;  2X3W A;  3ACO A;  1X04 A;  1I49 A;  2X3X A;  3ABH A;  4BNE A;  4I1Q A;  3I2W A;  2Q13 A;  3Q84 A;  4DCN C;  2FIC A;  4AVM A;  3OK8 A;  3SOG A;  2RAJ A;  1Y2O A;  3LLL A;  4NSW A;  4AKV A;  5C5B A;  3QWE A;  2D1L A;  2Z0O A;  3HAI A;  3PLT A;  3HAJ A;  3SYV A;  3QNI A;  1X03 A;  3G9G A;  2YKT A;  2Z0V A;  5C5B B;  2RAI A;  3QE6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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