4WQOD

Structure of vhl-elob-eloc-cul2
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
159
structure length
141
Chain Sequence
MSLKPRVVDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLENHVRHLHKRVLESEEQVLVMYHRYWEEYSKGADYMDCLYRYLNTQFIKKNPLMEIGELALDMWRKLMVEPLQAIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Von Hippel-Lindau disease tumor suppressor
publication title Insights into Cullin-RING E3 Ubiquitin Ligase Recruitment: Structure of the VHL-EloBC-Cul2 Complex.
pubmed doi rcsb
source organism Homo sapiens
total genus 52
structure length 141
sequence length 159
ec nomenclature
pdb deposition date 2014-10-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 4wqoD00
4N9F3 4AP2B 3DQVC 4A64A 4APFB 4EOZB 3DPLC 4JGHD 4F52A 1U6GA 4HXIB 4P5OA 1LDKA 1LDKB 4WQOD 2WZKA 3RTRA 1LDJA
chains in the Genus database with same CATH superfamily
4N9F3 3DQVC 3CPZA 4EOZB 2B1EA 1LDJA 2Y8DA 2XU0A 4JGHD 4NUVA 3BQIA 4HXIB 2WZKA 2WAUA 3BQLA 3CMLA 2PFVA 4F52A 1U6GA 4P5OA 4NUUA 1LDKB 4YFSA 4WQOD 3RTRA 4A64A 4AP2B 4APFB 3DPLC 3BQKA 3RRCA 5F3JA 1LDKA
chains in the Genus database with same CATH topology
4N9F3 4AP2B 3DQVC 4A64A 4APFB 4EOZB 3DPLC 4JGHD 4F52A 1U6GA 4HXIB 4P5OA 1LDKA 1LDKB 4WQOD 2WZKA 3RTRA 1LDJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N9F 3;  4AP2 B;  3DQV C;  4A64 A;  4APF B;  4EOZ B;  3DPL C;  4JGH D;  4F52 A;  1U6G A;  4HXI B;  4P5O A;  1LDK A;  1LDK B;  4WQO D;  2WZK A;  3RTR A;  1LDJ A; 
#chains in the Genus database with same CATH topology
 4N9F 3;  3DQV C;  3CPZ A;  4EOZ B;  2B1E A;  1LDJ A;  2Y8D A;  2XU0 A;  4JGH D;  4NUV A;  3BQI A;  4HXI B;  2WZK A;  2WAU A;  3BQL A;  3CML A;  2PFV A;  4F52 A;  1U6G A;  4P5O A;  4NUU A;  1LDK B;  4YFS A;  4WQO D;  3RTR A;  4A64 A;  4AP2 B;  4APF B;  3DPL C;  3BQK A;  3RRC A;  5F3J A;  1LDK A; 
#chains in the Genus database with same CATH homology
 4N9F 3;  4AP2 B;  3DQV C;  4A64 A;  4APF B;  4EOZ B;  3DPL C;  4JGH D;  4F52 A;  1U6G A;  4HXI B;  4P5O A;  1LDK A;  1LDK B;  4WQO D;  2WZK A;  3RTR A;  1LDJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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