4X2CA

Clostridium difficile fic protein_0569 mutant s31a, e35a
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
232
structure length
207
Chain Sequence
SFLDKLIETKELKNSLYNVLKHNFLYHANKIAGSTFTTEALALLLDKNVVTGRHTLDDVQETVNSSYVFDTVIDSLKEKITHNFLRNLHSSLIFNTTQPFEVEPKLDELIEWYYSQSEVSIKVIAEFHYRFELIHPFQDGNGRIGRFVMLKQMLENNLPIKIVSWDSEDLYRNSLNSCSLGNYVPLIEYLSSLEDFREVYKMLWKLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of Clostridium difficile Fic_0569 S31A, E35A mutant at 1.8 Angstroms resolution
rcsb
source organism Peptoclostridium difficile
molecule tags Structural protein
molecule keywords Fic family protein putative filamentation induced by cAMP pr
total genus 81
structure length 207
sequence length 232
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 4x2cA00
4N67A 4U07A 4U0ZA 4ITRA 4LU4A 3N3UA 5EU0A 3LETA 3SN9A 4U0SA 3S6AA 5CKLA 5CMTA 3SHGA 3ZCBA 5CGLA 3SE5A 2G03A 4NPSA 3ZC7A 5JFFA 4WGJA 4U04A 3CUCA 4U0UA 4X2EA 2JK8A 2F6SA 5JJ6A 5JJ7A 2VY3A 2VZAA 4M16A 4XI8A 5JFZA 4PY3A 4X2CA 4X2DA 3ZLMA
chains in the Genus database with same CATH superfamily
4N67A 4U07A 4U0ZA 1NH1A 4ITRA 4LU4A 2NUDA 3N3UA 5EU0A 3LETA 3SN9A 4U0SA 3S6AA 5CKLA 5CMTA 3SHGA 3ZCBA 5CGLA 3SE5A 2G03A 4NPSA 3ZC7A 5JFFA 4WGJA 4U04A 3CUCA 4U0UA 4X2EA 2JK8A 2F6SA 2NUNA 5JJ6A 5JJ7A 2VY3A 2VZAA 4M16A 4XI8A 5JFZA 4PY3A 4X2CA 4X2DA 3ZLMA
chains in the Genus database with same CATH topology
4N67A 4U07A 4U0ZA 4ITRA 4LU4A 3N3UA 5EU0A 3LETA 3SN9A 4U0SA 3S6AA 5CKLA 5CMTA 3SHGA 3ZCBA 5CGLA 3SE5A 2G03A 4NPSA 3ZC7A 5JFFA 4WGJA 4U04A 3CUCA 4U0UA 4X2EA 2JK8A 2F6SA 5JJ6A 5JJ7A 2VY3A 2VZAA 4M16A 4XI8A 5JFZA 4PY3A 4X2CA 4X2DA 3ZLMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N67 A;  4U07 A;  4U0Z A;  4ITR A;  4LU4 A;  3N3U A;  5EU0 A;  3LET A;  3SN9 A;  4U0S A;  3S6A A;  5CKL A;  5CMT A;  3SHG A;  3ZCB A;  5CGL A;  3SE5 A;  2G03 A;  4NPS A;  3ZC7 A;  5JFF A;  4WGJ A;  4U04 A;  3CUC A;  4U0U A;  4X2E A;  2JK8 A;  2F6S A;  5JJ6 A;  5JJ7 A;  2VY3 A;  2VZA A;  4M16 A;  4XI8 A;  5JFZ A;  4PY3 A;  4X2C A;  4X2D A;  3ZLM A; 
#chains in the Genus database with same CATH topology
 4N67 A;  4U07 A;  4U0Z A;  1NH1 A;  4ITR A;  4LU4 A;  2NUD A;  3N3U A;  5EU0 A;  3LET A;  3SN9 A;  4U0S A;  3S6A A;  5CKL A;  5CMT A;  3SHG A;  3ZCB A;  5CGL A;  3SE5 A;  2G03 A;  4NPS A;  3ZC7 A;  5JFF A;  4WGJ A;  4U04 A;  3CUC A;  4U0U A;  4X2E A;  2JK8 A;  2F6S A;  2NUN A;  5JJ6 A;  5JJ7 A;  2VY3 A;  2VZA A;  4M16 A;  4XI8 A;  5JFZ A;  4PY3 A;  4X2C A;  4X2D A;  3ZLM A; 
#chains in the Genus database with same CATH homology
 4N67 A;  4U07 A;  4U0Z A;  4ITR A;  4LU4 A;  3N3U A;  5EU0 A;  3LET A;  3SN9 A;  4U0S A;  3S6A A;  5CKL A;  5CMT A;  3SHG A;  3ZCB A;  5CGL A;  3SE5 A;  2G03 A;  4NPS A;  3ZC7 A;  5JFF A;  4WGJ A;  4U04 A;  3CUC A;  4U0U A;  4X2E A;  2JK8 A;  2F6S A;  5JJ6 A;  5JJ7 A;  2VY3 A;  2VZA A;  4M16 A;  4XI8 A;  5JFZ A;  4PY3 A;  4X2C A;  4X2D A;  3ZLM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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