4X2CA

Clostridium difficile fic protein_0569 mutant s31a, e35a
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
232
structure length
207
Chain Sequence
SFLDKLIETKELKNSLYNVLKHNFLYHANKIAGSTFTTEALALLLDKNVVTGRHTLDDVQETVNSSYVFDTVIDSLKEKITHNFLRNLHSSLIFNTTQPFEVEPKLDELIEWYYSQSEVSIKVIAEFHYRFELIHPFQDGNGRIGRFVMLKQMLENNLPIKIVSWDSEDLYRNSLNSCSLGNYVPLIEYLSSLEDFREVYKMLWKLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Fic family protein putative filamentation induced by cAMP pr
publication title Structure of Clostridium difficile Fic_0569 S31A, E35A mutant at 1.8 Angstroms resolution
rcsb
source organism Peptoclostridium difficile
total genus 81
structure length 207
sequence length 232
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 4x2cA00
5CGLA 3S6AA 4WGJA 3SHGA 5JJ7A 5EU0A 5JFFA 2F6SA 3SN9A 4U04A 4U07A 3LETA 2G03A 3ZCBA 3ZLMA 4ITRA 4XI8A 4U0UA 5CMTA 4X2DA 3ZC7A 3CUCA 4LU4A 3SE5A 4U0SA 2VZAA 4PY3A 4X2EA 5JFZA 4X2CA 4NPSA 4N67A 4M16A 5CKLA 5JJ6A 4U0ZA 2VY3A 3N3UA 2JK8A
chains in the Genus database with same CATH superfamily
5CGLA 3S6AA 4WGJA 2NUDA 3SHGA 5JJ7A 5EU0A 1NH1A 5JFFA 2F6SA 3SN9A 4U04A 4U07A 3LETA 2G03A 3ZCBA 3ZLMA 4ITRA 4XI8A 4U0UA 5CMTA 4X2DA 3ZC7A 3CUCA 2NUNA 4LU4A 3SE5A 2VZAA 4U0SA 4PY3A 4X2EA 5JFZA 4X2CA 4NPSA 4N67A 4M16A 5CKLA 5JJ6A 4U0ZA 2VY3A 3N3UA 2JK8A
chains in the Genus database with same CATH topology
5CGLA 3S6AA 4WGJA 3SHGA 5JJ7A 5EU0A 5JFFA 2F6SA 3SN9A 4U04A 4U07A 3LETA 2G03A 3ZCBA 3ZLMA 4ITRA 4XI8A 4U0UA 5CMTA 4X2DA 3ZC7A 3CUCA 4LU4A 3SE5A 4U0SA 2VZAA 4PY3A 4X2EA 5JFZA 4X2CA 4NPSA 4N67A 4M16A 5CKLA 5JJ6A 4U0ZA 2VY3A 3N3UA 2JK8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CGL A;  3S6A A;  4WGJ A;  3SHG A;  5JJ7 A;  5EU0 A;  5JFF A;  2F6S A;  3SN9 A;  4U04 A;  4U07 A;  3LET A;  2G03 A;  3ZCB A;  3ZLM A;  4ITR A;  4XI8 A;  4U0U A;  5CMT A;  4X2D A;  3ZC7 A;  3CUC A;  4LU4 A;  3SE5 A;  4U0S A;  2VZA A;  4PY3 A;  4X2E A;  5JFZ A;  4X2C A;  4NPS A;  4N67 A;  4M16 A;  5CKL A;  5JJ6 A;  4U0Z A;  2VY3 A;  3N3U A;  2JK8 A; 
#chains in the Genus database with same CATH topology
 5CGL A;  3S6A A;  4WGJ A;  2NUD A;  3SHG A;  5JJ7 A;  5EU0 A;  1NH1 A;  5JFF A;  2F6S A;  3SN9 A;  4U04 A;  4U07 A;  3LET A;  2G03 A;  3ZCB A;  3ZLM A;  4ITR A;  4XI8 A;  4U0U A;  5CMT A;  4X2D A;  3ZC7 A;  3CUC A;  2NUN A;  4LU4 A;  3SE5 A;  2VZA A;  4U0S A;  4PY3 A;  4X2E A;  5JFZ A;  4X2C A;  4NPS A;  4N67 A;  4M16 A;  5CKL A;  5JJ6 A;  4U0Z A;  2VY3 A;  3N3U A;  2JK8 A; 
#chains in the Genus database with same CATH homology
 5CGL A;  3S6A A;  4WGJ A;  3SHG A;  5JJ7 A;  5EU0 A;  5JFF A;  2F6S A;  3SN9 A;  4U04 A;  4U07 A;  3LET A;  2G03 A;  3ZCB A;  3ZLM A;  4ITR A;  4XI8 A;  4U0U A;  5CMT A;  4X2D A;  3ZC7 A;  3CUC A;  4LU4 A;  3SE5 A;  4U0S A;  2VZA A;  4PY3 A;  4X2E A;  5JFZ A;  4X2C A;  4NPS A;  4N67 A;  4M16 A;  5CKL A;  5JJ6 A;  4U0Z A;  2VY3 A;  3N3U A;  2JK8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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