4X2DA

Clostridium difficile fic protein_0569 mutant s31a, e35a in complex with atp
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
230
structure length
227
Chain Sequence
SFLDKLIETKNSLYNVLKHNFLYHANKIAGSTFTTEALALLLDKNVVTGRHTLDDVQETVNSSYVFDTVIDSLKEKITHNFLRNLHSSLIFNTTLHSRGMAGIYKTIPNMILGTDVSIAQPFEVEPKLDELIEWYYSQSEVSIKVIAEFHYRFELIHPFQDGNGRIGRFVMLKQMLENNLPIKIVSWDSEDLYRNSLNSCSLGNYVPLIEYLSSLEDFREVYKMLWK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of Clostridium difficile Fic_0569 S31A, E35A mutant at 1.8 Angstroms resolution
rcsb
source organism Peptoclostridium difficile
molecule tags Structural protein
molecule keywords Fic family protein putative filamentation induced by cAMP pr
total genus 84
structure length 227
sequence length 230
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 4x2dA00
4M16A 3ZC7A 3LETA 2VZAA 5JJ6A 3SHGA 4LU4A 4ITRA 4U0ZA 2G03A 4PY3A 5JFFA 4X2DA 4U0SA 3ZLMA 2VY3A 3SN9A 2JK8A 3ZCBA 5JFZA 3SE5A 5EU0A 4NPSA 3S6AA 3CUCA 5CGLA 4N67A 5CKLA 4U04A 5CMTA 4U0UA 3N3UA 4U07A 4WGJA 4X2CA 4XI8A 5JJ7A 4X2EA 2F6SA
chains in the Genus database with same CATH superfamily
4M16A 3ZC7A 3LETA 2VZAA 2NUNA 5JJ6A 3SHGA 4LU4A 4ITRA 4U0ZA 2G03A 4PY3A 2NUDA 5JFFA 4X2DA 1NH1A 4U0SA 3ZLMA 2VY3A 3SN9A 2JK8A 3ZCBA 5JFZA 3SE5A 5EU0A 4NPSA 3S6AA 3CUCA 5CGLA 4N67A 5CKLA 4U04A 5CMTA 4U0UA 3N3UA 4U07A 4WGJA 4X2CA 4XI8A 5JJ7A 4X2EA 2F6SA
chains in the Genus database with same CATH topology
4M16A 3ZC7A 3LETA 2VZAA 5JJ6A 3SHGA 4LU4A 4ITRA 4U0ZA 2G03A 4PY3A 5JFFA 4X2DA 4U0SA 3ZLMA 2VY3A 3SN9A 2JK8A 3ZCBA 5JFZA 3SE5A 5EU0A 4NPSA 3S6AA 3CUCA 5CGLA 4N67A 5CKLA 4U04A 5CMTA 4U0UA 3N3UA 4U07A 4WGJA 4X2CA 4XI8A 5JJ7A 4X2EA 2F6SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4M16 A;  3ZC7 A;  3LET A;  2VZA A;  5JJ6 A;  3SHG A;  4LU4 A;  4ITR A;  4U0Z A;  2G03 A;  4PY3 A;  5JFF A;  4X2D A;  4U0S A;  3ZLM A;  2VY3 A;  3SN9 A;  2JK8 A;  3ZCB A;  5JFZ A;  3SE5 A;  5EU0 A;  4NPS A;  3S6A A;  3CUC A;  5CGL A;  4N67 A;  5CKL A;  4U04 A;  5CMT A;  4U0U A;  3N3U A;  4U07 A;  4WGJ A;  4X2C A;  4XI8 A;  5JJ7 A;  4X2E A;  2F6S A; 
#chains in the Genus database with same CATH topology
 4M16 A;  3ZC7 A;  3LET A;  2VZA A;  2NUN A;  5JJ6 A;  3SHG A;  4LU4 A;  4ITR A;  4U0Z A;  2G03 A;  4PY3 A;  2NUD A;  5JFF A;  4X2D A;  1NH1 A;  4U0S A;  3ZLM A;  2VY3 A;  3SN9 A;  2JK8 A;  3ZCB A;  5JFZ A;  3SE5 A;  5EU0 A;  4NPS A;  3S6A A;  3CUC A;  5CGL A;  4N67 A;  5CKL A;  4U04 A;  5CMT A;  4U0U A;  3N3U A;  4U07 A;  4WGJ A;  4X2C A;  4XI8 A;  5JJ7 A;  4X2E A;  2F6S A; 
#chains in the Genus database with same CATH homology
 4M16 A;  3ZC7 A;  3LET A;  2VZA A;  5JJ6 A;  3SHG A;  4LU4 A;  4ITR A;  4U0Z A;  2G03 A;  4PY3 A;  5JFF A;  4X2D A;  4U0S A;  3ZLM A;  2VY3 A;  3SN9 A;  2JK8 A;  3ZCB A;  5JFZ A;  3SE5 A;  5EU0 A;  4NPS A;  3S6A A;  3CUC A;  5CGL A;  4N67 A;  5CKL A;  4U04 A;  5CMT A;  4U0U A;  3N3U A;  4U07 A;  4WGJ A;  4X2C A;  4XI8 A;  5JJ7 A;  4X2E A;  2F6S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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