4X2EA

Clostridium difficile wild type fic protein
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
227
structure length
201
Chain Sequence
SFLDKLIETKELKNSLYNVLKHNFLYHSNKIEGSTFTTEALALLLDKNVVTGRHTLDDVQETVNSSYVFDTVIDSLKEKITHNFLRNLHSSLIFNTTLHEVEPKLDELIEWYYSQSEVSIKVIAEFHYRFELIHPFQDGNGRIGRFVMLKQMLENNLPIKIVSWDSEDLYRNSLNSCSLGNYVPLIEYLSSLEDFREVYKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of wild type Clostridium difficile Fic_0569 at 3.1 Angstroms resolution
rcsb
source organism Peptoclostridium difficile
molecule tags Transferase
molecule keywords Fic family protein putative filamentation induced by cAMP pr
total genus 69
structure length 201
sequence length 227
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 4x2eA00
5JJ6A 4ITRA 3ZLMA 5CKLA 2F6SA 4M16A 3CUCA 4X2CA 5JFFA 4LU4A 5JJ7A 2JK8A 4U0UA 4N67A 3ZCBA 5JFZA 3ZC7A 3LETA 2G03A 4U0ZA 5EU0A 4NPSA 4U0SA 2VZAA 5CMTA 4WGJA 3SHGA 4PY3A 4U07A 5CGLA 4U04A 3N3UA 4XI8A 2VY3A 3S6AA 4X2DA 4X2EA 3SN9A 3SE5A
chains in the Genus database with same CATH superfamily
5JJ6A 4ITRA 3ZLMA 5CKLA 2F6SA 4M16A 3CUCA 4X2CA 5JFFA 4LU4A 1NH1A 5JJ7A 2JK8A 4U0UA 4N67A 3ZCBA 5JFZA 2NUNA 3ZC7A 3LETA 2G03A 4U0ZA 5EU0A 4NPSA 4U0SA 2VZAA 5CMTA 4WGJA 3SHGA 4PY3A 4U07A 5CGLA 4U04A 3N3UA 4XI8A 2NUDA 2VY3A 3S6AA 4X2DA 4X2EA 3SN9A 3SE5A
chains in the Genus database with same CATH topology
5JJ6A 4ITRA 3ZLMA 5CKLA 2F6SA 4M16A 3CUCA 4X2CA 5JFFA 4LU4A 5JJ7A 2JK8A 4U0UA 4N67A 3ZCBA 5JFZA 3ZC7A 3LETA 2G03A 4U0ZA 5EU0A 4NPSA 4U0SA 2VZAA 5CMTA 4WGJA 3SHGA 4PY3A 4U07A 5CGLA 4U04A 3N3UA 4XI8A 2VY3A 3S6AA 4X2DA 4X2EA 3SN9A 3SE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JJ6 A;  4ITR A;  3ZLM A;  5CKL A;  2F6S A;  4M16 A;  3CUC A;  4X2C A;  5JFF A;  4LU4 A;  5JJ7 A;  2JK8 A;  4U0U A;  4N67 A;  3ZCB A;  5JFZ A;  3ZC7 A;  3LET A;  2G03 A;  4U0Z A;  5EU0 A;  4NPS A;  4U0S A;  2VZA A;  5CMT A;  4WGJ A;  3SHG A;  4PY3 A;  4U07 A;  5CGL A;  4U04 A;  3N3U A;  4XI8 A;  2VY3 A;  3S6A A;  4X2D A;  4X2E A;  3SN9 A;  3SE5 A; 
#chains in the Genus database with same CATH topology
 5JJ6 A;  4ITR A;  3ZLM A;  5CKL A;  2F6S A;  4M16 A;  3CUC A;  4X2C A;  5JFF A;  4LU4 A;  1NH1 A;  5JJ7 A;  2JK8 A;  4U0U A;  4N67 A;  3ZCB A;  5JFZ A;  2NUN A;  3ZC7 A;  3LET A;  2G03 A;  4U0Z A;  5EU0 A;  4NPS A;  4U0S A;  2VZA A;  5CMT A;  4WGJ A;  3SHG A;  4PY3 A;  4U07 A;  5CGL A;  4U04 A;  3N3U A;  4XI8 A;  2NUD A;  2VY3 A;  3S6A A;  4X2D A;  4X2E A;  3SN9 A;  3SE5 A; 
#chains in the Genus database with same CATH homology
 5JJ6 A;  4ITR A;  3ZLM A;  5CKL A;  2F6S A;  4M16 A;  3CUC A;  4X2C A;  5JFF A;  4LU4 A;  5JJ7 A;  2JK8 A;  4U0U A;  4N67 A;  3ZCB A;  5JFZ A;  3ZC7 A;  3LET A;  2G03 A;  4U0Z A;  5EU0 A;  4NPS A;  4U0S A;  2VZA A;  5CMT A;  4WGJ A;  3SHG A;  4PY3 A;  4U07 A;  5CGL A;  4U04 A;  3N3U A;  4XI8 A;  2VY3 A;  3S6A A;  4X2D A;  4X2E A;  3SN9 A;  3SE5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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