4X46A

X-ray structure thymidine phosphorylase from salmonella typhimurium complex with so4 at 2.19 a
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
440
structure length
440
Chain Sequence
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIQDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITGSILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGQLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPSDFVENYDKYLPTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDSIDGQRPLAVIHAKDEASWQEAAKAVKAAIILDDKAPASTPSVYRRITE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Thymidine phosphorylase
publication title X-RAY structure thymidine phosphorylase from Salmonella typhimurium complex with SO4 at 2.19 A
rcsb
source organism Salmonella enterica subsp. enterica serovar typhimurium
total genus 149
structure length 440
sequence length 440
chains with identical sequence B
ec nomenclature ec 2.4.2.4: Thymidine phosphorylase.
pdb deposition date 2014-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
A PF07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 4x46A01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 4x46A02
3.90.1170.30 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Pyrimidine nucleoside phosphorylase-like, C-terminal domain 4x46A03
5BNEA 4GA5A 2DSJA 4N5VA 2GVQA 1BRWA 5BO3A 2ELCA 4HKMA 3UU1A 5C2LA 1AZYA 3QS8A 1GXBA 1V8GA 1ZVWA 1UOUA 4M0RA 3H5QA 5BYTA 4N93A 4X59A 3QQSA 2BPQA 4MUOA 4EAFA 1ZYKA 4XR5A 4GIUA 4ZOJA 4GTNA 4EADA 4YEKA 4OWVA 3TWPA 1ZXYA 5BO2A 4X5DA 4X5CA 2WK6A 2J0FA 4OWQA 1O17A 5EY3A 2TPTA 4YYYA 5C7SA 4GA6A 4X58A 4X5BA 3R6CA 5EP8A 4OWOA 4IJ1A 4ZOFA 1OTPA 4OWSA 4OWNA 4GA4A 2WK5A 4OWMA 4X5EA 1KGZA 3QSAA 3QR9A 4ZTVA 4N8QA 1VQUA 4ZOKA 3GBRA 4X5AA 4OWUA 4YI7A 4GKMA 4LHMA 5C1RA 3R88A 1KHDA 4X46A
chains in the Genus database with same CATH superfamily
1QAPA 5GAGN 5BNEA 3WO0A 1RM6A 4U67J 4GA5A 1YIJH 4AP8A 1VQOH 1V97A 3SR6C 1KQSH 3CC4H 2DSJA 1YTDA 3BIIE 3NRZC 5GADN 4WFNJ 2OTJH 3TQVA 4N5VA 2GVQA 3B9JC 1BRWA 5BO3A 1FMAE 3CXCH 1FIQC 2ELCA 4HKMA 3UU1A 1ZXIB 3RPFA 3CCLH 4WFBJ 5C2LA 1AZYA 3G6EH 1VQPH 1YJ9H 4UY8M 3PIOJ 3QS8A 1W2BH 1O4UA 1N61B 5DM6J 1N5WB 1GXBA 1V8GA 1ZVWA 1UOUA 4M0RA 2Q5WE 3PAJA 3H5QA 5JVHJ 2JBMA 1N60B 2B7PA 3CCEH 3NVZC 5DM7J 5BYTA 4N93A 3C2VA 4X59A 1VLBA 3G4SH 1JROB 3QQSA 1WYGA 3C2RA 2ZJRJ 1WKIA 1K73J 1N8RJ 2W55B 2E3TA 2I1OA 3AM9A 3GNNA 1FO4A 1M90J 4KWVA 2BPQA 4MUOA 3FAHA 3CCSH 4EAFA 3AMZA 1VDVA 2WP4A 1ZYKA 3AN1A 4C7YA 1VQKH 1RF8B 4XR5A 3NVWC 1VQ5H 3CC2H 4GIUA 3ETRC 4ZOJA 4USAA 1K8AJ 4GTNA 4EADA 5GAHN 4IOAJ 2W3RB 4YEKA 5HUOA 4OWVA 1SIJA 3CCJH 3TWPA 1ZXYA 5BO2A 3C2EA 4WCEJ 2ZJPJ 4X5DA 1VQ4H 2W54B 4X5CA 1Q7YJ 2WK6A 4IO9J 5AYXA 1Y69K 2J0FA 4OWQA 1X1OA 4C80A 1FFUB 5HL7J 3G71H 4WFAJ 3CD6H 1O17A 1YJNH 5EY3A 2TPTA 3L4PA 2OTLH 5JVGJ 4YYYA 4US9A 1KD1J 4IOCJ 4GA6A 5C7SA 1N5XA 3CMAH 4X58A 3PIPJ 3WNZA 4X5BA 3EUB4 3R6CA 1YI2H 1YTEA 4US8A 5EP8A 1N62B 4OWOA 1FFVB 3I56H 1YJWH 4ZOHA 1VQLH 4IJ1A 4ZOFA 5MLCO 1N63B 4C7ZA 1OTPA 4OWSA 1FM0E 4OWNA 3C2FA 5AN9F 3CCQH 1VQ9H 2B7QA 4GA4A 5AYZA 5HULA 2WK5A 4OWMA 3J7ZM 3CCUH 1VQ7H 4X5EA 1KGZA 3QSAA 3QR9A 4ZTVA 1NVIE 1QPQA 2OMDA 3I55H 2QA4H 2ZJQJ 3CC7H 3CPWH 4N8QA 1VQUA 5HUPA 3CF5J 1YTKA 1KC8J 3CCVH 1M1KJ 1Q81J 4KWWA 2B7NA 2I14A 1Q82J 1JRPB 3CCRH 1VQ6H 1QPRA 3C2OA 3CCMH 3NVVC 4ZOKA 1VQNH 1QPOA 1YHQH 4WF9J 5H1SO 3GBRA 2QEXH 4X5AA 3NVYC 1SB3A 1NJIJ 4I9AA 1K9MJ 1YITH 1RRZA 3WO1A 1QVGH 4OWUA 1S72H 2PA2A 3L0GA 5GAEN 5MPOC 2W3SB 1DGJA 1Q86J 3VMMA 4YI7A 3DLLJ 1QVFH 4GKMA 3FC4A 4LHMA 1QPNA 5C1RA 3R88A 1NVJA 4F3FC 3OW2H 1VQMH 3CMEH 1KHDA 1JJ2H 5AYYA 2QIEA 1VQ8H 4X46A 3NS1C
chains in the Genus database with same CATH topology
5BNEA 4GA5A 2DSJA 4N5VA 2GVQA 1BRWA 5BO3A 2ELCA 4HKMA 3UU1A 5C2LA 1AZYA 3QS8A 1GXBA 1V8GA 1ZVWA 1UOUA 4M0RA 3H5QA 5BYTA 4N93A 4X59A 3QQSA 2BPQA 4MUOA 4EAFA 1ZYKA 4XR5A 4GIUA 4ZOJA 4GTNA 4EADA 4YEKA 4OWVA 3TWPA 1ZXYA 5BO2A 4X5DA 4X5CA 2WK6A 2J0FA 4OWQA 1O17A 5EY3A 2TPTA 4YYYA 5C7SA 4GA6A 4X58A 4X5BA 3R6CA 5EP8A 4OWOA 4IJ1A 4ZOFA 1OTPA 4OWSA 4OWNA 4GA4A 2WK5A 4OWMA 4X5EA 1KGZA 3QSAA 3QR9A 4ZTVA 4N8QA 1VQUA 4ZOKA 3GBRA 4X5AA 4OWUA 4YI7A 4GKMA 4LHMA 5C1RA 3R88A 1KHDA 4X46A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BNE A;  4GA5 A;  2DSJ A;  4N5V A;  2GVQ A;  1BRW A;  5BO3 A;  2ELC A;  4HKM A;  3UU1 A;  5C2L A;  1AZY A;  3QS8 A;  1GXB A;  1V8G A;  1ZVW A;  1UOU A;  4M0R A;  3H5Q A;  5BYT A;  4N93 A;  4X59 A;  3QQS A;  2BPQ A;  4MUO A;  4EAF A;  1ZYK A;  4XR5 A;  4GIU A;  4ZOJ A;  4GTN A;  4EAD A;  4YEK A;  4OWV A;  3TWP A;  1ZXY A;  5BO2 A;  4X5D A;  4X5C A;  2WK6 A;  2J0F A;  4OWQ A;  1O17 A;  5EY3 A;  2TPT A;  4YYY A;  5C7S A;  4GA6 A;  4X58 A;  4X5B A;  3R6C A;  5EP8 A;  4OWO A;  4IJ1 A;  4ZOF A;  1OTP A;  4OWS A;  4OWN A;  4GA4 A;  2WK5 A;  4OWM A;  4X5E A;  1KGZ A;  3QSA A;  3QR9 A;  4ZTV A;  4N8Q A;  1VQU A;  4ZOK A;  3GBR A;  4X5A A;  4OWU A;  4YI7 A;  4GKM A;  4LHM A;  5C1R A;  3R88 A;  1KHD A;  4X46 A; 
#chains in the Genus database with same CATH topology
 1QAP A;  5GAG N;  5BNE A;  3WO0 A;  1RM6 A;  4U67 J;  4GA5 A;  1YIJ H;  4AP8 A;  1VQO H;  1V97 A;  3SR6 C;  1KQS H;  3CC4 H;  2DSJ A;  1YTD A;  3BII E;  3NRZ C;  5GAD N;  4WFN J;  2OTJ H;  3TQV A;  4N5V A;  2GVQ A;  3B9J C;  1BRW A;  5BO3 A;  1FMA E;  3CXC H;  1FIQ C;  2ELC A;  4HKM A;  3UU1 A;  1ZXI B;  3RPF A;  3CCL H;  4WFB J;  5C2L A;  1AZY A;  3G6E H;  1VQP H;  1YJ9 H;  4UY8 M;  3PIO J;  3QS8 A;  1W2B H;  1O4U A;  1N61 B;  5DM6 J;  1N5W B;  1GXB A;  1V8G A;  1ZVW A;  1UOU A;  4M0R A;  2Q5W E;  3PAJ A;  3H5Q A;  5JVH J;  2JBM A;  1N60 B;  2B7P A;  3CCE H;  3NVZ C;  5DM7 J;  5BYT A;  4N93 A;  3C2V A;  4X59 A;  1VLB A;  3G4S H;  1JRO B;  3QQS A;  1WYG A;  3C2R A;  2ZJR J;  1WKI A;  1K73 J;  1N8R J;  2W55 B;  2E3T A;  2I1O A;  3AM9 A;  3GNN A;  1FO4 A;  1M90 J;  4KWV A;  2BPQ A;  4MUO A;  3FAH A;  3CCS H;  4EAF A;  3AMZ A;  1VDV A;  2WP4 A;  1ZYK A;  3AN1 A;  4C7Y A;  1VQK H;  1RF8 B;  4XR5 A;  3NVW C;  1VQ5 H;  3CC2 H;  4GIU A;  3ETR C;  4ZOJ A;  4USA A;  1K8A J;  4GTN A;  4EAD A;  5GAH N;  4IOA J;  2W3R B;  4YEK A;  5HUO A;  4OWV A;  1SIJ A;  3CCJ H;  3TWP A;  1ZXY A;  5BO2 A;  3C2E A;  4WCE J;  2ZJP J;  4X5D A;  1VQ4 H;  2W54 B;  4X5C A;  1Q7Y J;  2WK6 A;  4IO9 J;  5AYX A;  1Y69 K;  2J0F A;  4OWQ A;  1X1O A;  4C80 A;  1FFU B;  5HL7 J;  3G71 H;  4WFA J;  3CD6 H;  1O17 A;  1YJN H;  5EY3 A;  2TPT A;  3L4P A;  2OTL H;  5JVG J;  4YYY A;  4US9 A;  1KD1 J;  4IOC J;  4GA6 A;  5C7S A;  1N5X A;  3CMA H;  4X58 A;  3PIP J;  3WNZ A;  4X5B A;  3EUB 4;  3R6C A;  1YI2 H;  1YTE A;  4US8 A;  5EP8 A;  1N62 B;  4OWO A;  1FFV B;  3I56 H;  1YJW H;  4ZOH A;  1VQL H;  4IJ1 A;  4ZOF A;  5MLC O;  1N63 B;  4C7Z A;  1OTP A;  4OWS A;  1FM0 E;  4OWN A;  3C2F A;  5AN9 F;  3CCQ H;  1VQ9 H;  2B7Q A;  4GA4 A;  5AYZ A;  5HUL A;  2WK5 A;  4OWM A;  3J7Z M;  3CCU H;  1VQ7 H;  4X5E A;  1KGZ A;  3QSA A;  3QR9 A;  4ZTV A;  1NVI E;  1QPQ A;  2OMD A;  3I55 H;  2QA4 H;  2ZJQ J;  3CC7 H;  3CPW H;  4N8Q A;  1VQU A;  5HUP A;  3CF5 J;  1YTK A;  1KC8 J;  3CCV H;  1M1K J;  1Q81 J;  4KWW A;  2B7N A;  2I14 A;  1Q82 J;  1JRP B;  3CCR H;  1VQ6 H;  1QPR A;  3C2O A;  3CCM H;  3NVV C;  4ZOK A;  1VQN H;  1QPO A;  1YHQ H;  4WF9 J;  5H1S O;  3GBR A;  2QEX H;  4X5A A;  3NVY C;  1SB3 A;  1NJI J;  4I9A A;  1K9M J;  1YIT H;  1RRZ A;  3WO1 A;  1QVG H;  4OWU A;  1S72 H;  2PA2 A;  3L0G A;  5GAE N;  5MPO C;  2W3S B;  1DGJ A;  1Q86 J;  3VMM A;  4YI7 A;  3DLL J;  1QVF H;  4GKM A;  3FC4 A;  4LHM A;  1QPN A;  5C1R A;  3R88 A;  1NVJ A;  4F3F C;  3OW2 H;  1VQM H;  3CME H;  1KHD A;  1JJ2 H;  5AYY A;  2QIE A;  1VQ8 H;  4X46 A;  3NS1 C; 
#chains in the Genus database with same CATH homology
 5BNE A;  4GA5 A;  2DSJ A;  4N5V A;  2GVQ A;  1BRW A;  5BO3 A;  2ELC A;  4HKM A;  3UU1 A;  5C2L A;  1AZY A;  3QS8 A;  1GXB A;  1V8G A;  1ZVW A;  1UOU A;  4M0R A;  3H5Q A;  5BYT A;  4N93 A;  4X59 A;  3QQS A;  2BPQ A;  4MUO A;  4EAF A;  1ZYK A;  4XR5 A;  4GIU A;  4ZOJ A;  4GTN A;  4EAD A;  4YEK A;  4OWV A;  3TWP A;  1ZXY A;  5BO2 A;  4X5D A;  4X5C A;  2WK6 A;  2J0F A;  4OWQ A;  1O17 A;  5EY3 A;  2TPT A;  4YYY A;  5C7S A;  4GA6 A;  4X58 A;  4X5B A;  3R6C A;  5EP8 A;  4OWO A;  4IJ1 A;  4ZOF A;  1OTP A;  4OWS A;  4OWN A;  4GA4 A;  2WK5 A;  4OWM A;  4X5E A;  1KGZ A;  3QSA A;  3QR9 A;  4ZTV A;  4N8Q A;  1VQU A;  4ZOK A;  3GBR A;  4X5A A;  4OWU A;  4YI7 A;  4GKM A;  4LHM A;  5C1R A;  3R88 A;  1KHD A;  4X46 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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