4X46A

X-ray structure thymidine phosphorylase from salmonella typhimurium complex with so4 at 2.19 a
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
440
structure length
440
Chain Sequence
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIQDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITGSILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGQLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPSDFVENYDKYLPTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDSIDGQRPLAVIHAKDEASWQEAAKAVKAAIILDDKAPASTPSVYRRITE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Thymidine phosphorylase
publication title X-RAY structure thymidine phosphorylase from Salmonella typhimurium complex with SO4 at 2.19 A
rcsb
source organism Salmonella enterica subsp. enterica serovar typhimurium
total genus 149
structure length 440
sequence length 440
chains with identical sequence B
ec nomenclature ec 2.4.2.4: Thymidine phosphorylase.
pdb deposition date 2014-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
A PF07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 4x46A01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 4x46A02
3.90.1170.30 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Pyrimidine nucleoside phosphorylase-like, C-terminal domain 4x46A03
5EP8A 2WK6A 3QS8A 1KHDA 3QQSA 1UOUA 5C1RA 3H5QA 1ZXYA 4OWNA 2WK5A 4OWOA 1AZYA 4OWSA 2GVQA 3R6CA 4N5VA 4N8QA 4OWUA 4X5EA 1ZYKA 3QSAA 4GTNA 2BPQA 1BRWA 4X5CA 5EY3A 3QR9A 5C2LA 4ZOJA 4ZOFA 4OWQA 3R88A 1KGZA 1GXBA 4YYYA 4IJ1A 1O17A 3GBRA 4X5BA 5C7SA 4GIUA 2TPTA 2J0FA 4OWVA 1VQUA 4HKMA 4EADA 1V8GA 4EAFA 4GKMA 4YEKA 4X46A 4GA4A 5BO2A 5BO3A 4X58A 5BNEA 1OTPA 5BYTA 4ZOKA 4N93A 4X5AA 2ELCA 4OWMA 2DSJA 4XR5A 1ZVWA 4YI7A 4GA6A 4GA5A 4M0RA 4X59A 4ZTVA 4LHMA 4X5DA 3UU1A 4MUOA 3TWPA
chains in the Genus database with same CATH superfamily
1FMAE 2WP4A 1VQ6H 1RRZA 5EP8A 3G71H 3CCSH 1VQ4H 2OMDA 4F3FC 2WK6A 3TQVA 1NVJA 3B9JC 3QS8A 1FIQC 1KHDA 5GADN 5DM6J 3I55H 4IO9J 2QA4H 1Q81J 1YTEA 3QQSA 1UOUA 1QVFH 3G6EH 1N5WB 5C1RA 3NS1C 3CCEH 3H5QA 2PA2A 1ZXYA 4OWNA 1VQOH 3CC7H 2OTJH 4AP8A 2WK5A 4OWOA 1AZYA 4U67J 2QEXH 4OWSA 1N8RJ 1WKIA 3RPFA 2GVQA 3R6CA 2ZJQJ 3CXCH 4N5VA 4N8QA 4OWUA 1K8AJ 1VQ7H 1N63B 1Q82J 3CD6H 3BIIE 5AYXA 4X5EA 2B7NA 3GNNA 1ZYKA 3QSAA 1N61B 5HL7J 3C2OA 1YIJH 1S72H 4GTNA 2BPQA 1WYGA 3NVWC 1NJIJ 1BRWA 3C2EA 3AN1A 4X5CA 5EY3A 4WFAJ 3QR9A 5C2LA 2ZJPJ 4ZOJA 3ETRC 4ZOFA 1YTKA 1O4UA 4OWQA 5GAHN 3R88A 1KGZA 3VMMA 4IOCJ 3WO1A 1GXBA 4YYYA 3C2RA 5H1SO 3CC2H 3OW2H 2OTLH 5HULA 4USAA 3CCMH 4IJ1A 2W3SB 4US9A 3SR6C 1O17A 4IOAJ 1DGJA 4WF9J 3EUB4 2Q5WE 3GBRA 1ZXIB 2W55B 3AM9A 1QPOA 4KWVA 3CCRH 4X5BA 5C7SA 1YJ9H 1KQSH 1JRPB 3AMZA 4GIUA 1JJ2H 5GAEN 1YTDA 4ZOHA 3DLLJ 2TPTA 2J0FA 4OWVA 1K9MJ 3G4SH 1KD1J 5AYZA 3NVYC 4KWWA 1VQUA 4HKMA 4WFBJ 1YJNH 4EADA 1V8GA 4I9AA 1M1KJ 4EAFA 1VQ8H 3PIPJ 1YI2H 4GKMA 4YEKA 1FO4A 1YJWH 3NVZC 1YITH 4X46A 1RM6A 1QPNA 4GA4A 5BO2A 1QPRA 3C2VA 4WFNJ 3I56H 1W2BH 1K73J 5AYYA 5BO3A 2W54B 4US8A 1QAPA 3CCLH 4X58A 1Y69K 2I14A 5BNEA 1V97A 1OTPA 1VQNH 2I1OA 2ZJRJ 3C2FA 1Q7YJ 1VQLH 3WNZA 3FC4A 2E3TA 5JVHJ 1VQ5H 5HUOA 5MPOC 2QIEA 5BYTA 4ZOKA 3CMAH 3J7ZM 3CCJH 1FFUB 1N5XA 3L4PA 4N93A 5AN9F 3CC4H 4X5AA 3CCUH 1YHQH 1VDVA 3CCQH 2ELCA 3PAJA 3CF5J 1M90J 1VQKH 4OWMA 3CPWH 5MLCO 3CCVH 1RF8B 2DSJA 3NRZC 4XR5A 2W3RB 4UY8M 5JVGJ 1JROB 5HUPA 1Q86J 4C7ZA 1SB3A 3NVVC 1FM0E 2JBMA 4WCEJ 4C7YA 1VLBA 1ZVWA 1N62B 1FFVB 4YI7A 3FAHA 4GA6A 4GA5A 4C80A 3PIOJ 2B7QA 4M0RA 1N60B 4X59A 1X1OA 1VQPH 1VQMH 1KC8J 3CMEH 3WO0A 5GAGN 4ZTVA 1QPQA 4LHMA 4X5DA 3L0GA 1NVIE 3UU1A 5DM7J 2B7PA 1QVGH 1VQ9H 4MUOA 1SIJA 3TWPA
chains in the Genus database with same CATH topology
5EP8A 2WK6A 3QS8A 1KHDA 3QQSA 1UOUA 5C1RA 3H5QA 1ZXYA 4OWNA 2WK5A 4OWOA 1AZYA 4OWSA 2GVQA 3R6CA 4N5VA 4N8QA 4OWUA 4X5EA 1ZYKA 3QSAA 4GTNA 2BPQA 1BRWA 4X5CA 5EY3A 3QR9A 5C2LA 4ZOJA 4ZOFA 4OWQA 3R88A 1KGZA 1GXBA 4YYYA 4IJ1A 1O17A 3GBRA 4X5BA 5C7SA 4GIUA 2TPTA 2J0FA 4OWVA 1VQUA 4HKMA 4EADA 1V8GA 4EAFA 4GKMA 4YEKA 4X46A 4GA4A 5BO2A 5BO3A 4X58A 5BNEA 1OTPA 5BYTA 4ZOKA 4N93A 4X5AA 2ELCA 4OWMA 2DSJA 4XR5A 1ZVWA 4YI7A 4GA6A 4GA5A 4M0RA 4X59A 4ZTVA 4LHMA 4X5DA 3UU1A 4MUOA 3TWPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EP8 A;  2WK6 A;  3QS8 A;  1KHD A;  3QQS A;  1UOU A;  5C1R A;  3H5Q A;  1ZXY A;  4OWN A;  2WK5 A;  4OWO A;  1AZY A;  4OWS A;  2GVQ A;  3R6C A;  4N5V A;  4N8Q A;  4OWU A;  4X5E A;  1ZYK A;  3QSA A;  4GTN A;  2BPQ A;  1BRW A;  4X5C A;  5EY3 A;  3QR9 A;  5C2L A;  4ZOJ A;  4ZOF A;  4OWQ A;  3R88 A;  1KGZ A;  1GXB A;  4YYY A;  4IJ1 A;  1O17 A;  3GBR A;  4X5B A;  5C7S A;  4GIU A;  2TPT A;  2J0F A;  4OWV A;  1VQU A;  4HKM A;  4EAD A;  1V8G A;  4EAF A;  4GKM A;  4YEK A;  4X46 A;  4GA4 A;  5BO2 A;  5BO3 A;  4X58 A;  5BNE A;  1OTP A;  5BYT A;  4ZOK A;  4N93 A;  4X5A A;  2ELC A;  4OWM A;  2DSJ A;  4XR5 A;  1ZVW A;  4YI7 A;  4GA6 A;  4GA5 A;  4M0R A;  4X59 A;  4ZTV A;  4LHM A;  4X5D A;  3UU1 A;  4MUO A;  3TWP A; 
#chains in the Genus database with same CATH topology
 1FMA E;  2WP4 A;  1VQ6 H;  1RRZ A;  5EP8 A;  3G71 H;  3CCS H;  1VQ4 H;  2OMD A;  4F3F C;  2WK6 A;  3TQV A;  1NVJ A;  3B9J C;  3QS8 A;  1FIQ C;  1KHD A;  5GAD N;  5DM6 J;  3I55 H;  4IO9 J;  2QA4 H;  1Q81 J;  1YTE A;  3QQS A;  1UOU A;  1QVF H;  3G6E H;  1N5W B;  5C1R A;  3NS1 C;  3CCE H;  3H5Q A;  2PA2 A;  1ZXY A;  4OWN A;  1VQO H;  3CC7 H;  2OTJ H;  4AP8 A;  2WK5 A;  4OWO A;  1AZY A;  4U67 J;  2QEX H;  4OWS A;  1N8R J;  1WKI A;  3RPF A;  2GVQ A;  3R6C A;  2ZJQ J;  3CXC H;  4N5V A;  4N8Q A;  4OWU A;  1K8A J;  1VQ7 H;  1N63 B;  1Q82 J;  3CD6 H;  3BII E;  5AYX A;  4X5E A;  2B7N A;  3GNN A;  1ZYK A;  3QSA A;  1N61 B;  5HL7 J;  3C2O A;  1YIJ H;  1S72 H;  4GTN A;  2BPQ A;  1WYG A;  3NVW C;  1NJI J;  1BRW A;  3C2E A;  3AN1 A;  4X5C A;  5EY3 A;  4WFA J;  3QR9 A;  5C2L A;  2ZJP J;  4ZOJ A;  3ETR C;  4ZOF A;  1YTK A;  1O4U A;  4OWQ A;  5GAH N;  3R88 A;  1KGZ A;  3VMM A;  4IOC J;  3WO1 A;  1GXB A;  4YYY A;  3C2R A;  5H1S O;  3CC2 H;  3OW2 H;  2OTL H;  5HUL A;  4USA A;  3CCM H;  4IJ1 A;  2W3S B;  4US9 A;  3SR6 C;  1O17 A;  4IOA J;  1DGJ A;  4WF9 J;  3EUB 4;  2Q5W E;  3GBR A;  1ZXI B;  2W55 B;  3AM9 A;  1QPO A;  4KWV A;  3CCR H;  4X5B A;  5C7S A;  1YJ9 H;  1KQS H;  1JRP B;  3AMZ A;  4GIU A;  1JJ2 H;  5GAE N;  1YTD A;  4ZOH A;  3DLL J;  2TPT A;  2J0F A;  4OWV A;  1K9M J;  3G4S H;  1KD1 J;  5AYZ A;  3NVY C;  4KWW A;  1VQU A;  4HKM A;  4WFB J;  1YJN H;  4EAD A;  1V8G A;  4I9A A;  1M1K J;  4EAF A;  1VQ8 H;  3PIP J;  1YI2 H;  4GKM A;  4YEK A;  1FO4 A;  1YJW H;  3NVZ C;  1YIT H;  4X46 A;  1RM6 A;  1QPN A;  4GA4 A;  5BO2 A;  1QPR A;  3C2V A;  4WFN J;  3I56 H;  1W2B H;  1K73 J;  5AYY A;  5BO3 A;  2W54 B;  4US8 A;  1QAP A;  3CCL H;  4X58 A;  1Y69 K;  2I14 A;  5BNE A;  1V97 A;  1OTP A;  1VQN H;  2I1O A;  2ZJR J;  3C2F A;  1Q7Y J;  1VQL H;  3WNZ A;  3FC4 A;  2E3T A;  5JVH J;  1VQ5 H;  5HUO A;  5MPO C;  2QIE A;  5BYT A;  4ZOK A;  3CMA H;  3J7Z M;  3CCJ H;  1FFU B;  1N5X A;  3L4P A;  4N93 A;  5AN9 F;  3CC4 H;  4X5A A;  3CCU H;  1YHQ H;  1VDV A;  3CCQ H;  2ELC A;  3PAJ A;  3CF5 J;  1M90 J;  1VQK H;  4OWM A;  3CPW H;  5MLC O;  3CCV H;  1RF8 B;  2DSJ A;  3NRZ C;  4XR5 A;  2W3R B;  4UY8 M;  5JVG J;  1JRO B;  5HUP A;  1Q86 J;  4C7Z A;  1SB3 A;  3NVV C;  1FM0 E;  2JBM A;  4WCE J;  4C7Y A;  1VLB A;  1ZVW A;  1N62 B;  1FFV B;  4YI7 A;  3FAH A;  4GA6 A;  4GA5 A;  4C80 A;  3PIO J;  2B7Q A;  4M0R A;  1N60 B;  4X59 A;  1X1O A;  1VQP H;  1VQM H;  1KC8 J;  3CME H;  3WO0 A;  5GAG N;  4ZTV A;  1QPQ A;  4LHM A;  4X5D A;  3L0G A;  1NVI E;  3UU1 A;  5DM7 J;  2B7P A;  1QVG H;  1VQ9 H;  4MUO A;  1SIJ A;  3TWP A; 
#chains in the Genus database with same CATH homology
 5EP8 A;  2WK6 A;  3QS8 A;  1KHD A;  3QQS A;  1UOU A;  5C1R A;  3H5Q A;  1ZXY A;  4OWN A;  2WK5 A;  4OWO A;  1AZY A;  4OWS A;  2GVQ A;  3R6C A;  4N5V A;  4N8Q A;  4OWU A;  4X5E A;  1ZYK A;  3QSA A;  4GTN A;  2BPQ A;  1BRW A;  4X5C A;  5EY3 A;  3QR9 A;  5C2L A;  4ZOJ A;  4ZOF A;  4OWQ A;  3R88 A;  1KGZ A;  1GXB A;  4YYY A;  4IJ1 A;  1O17 A;  3GBR A;  4X5B A;  5C7S A;  4GIU A;  2TPT A;  2J0F A;  4OWV A;  1VQU A;  4HKM A;  4EAD A;  1V8G A;  4EAF A;  4GKM A;  4YEK A;  4X46 A;  4GA4 A;  5BO2 A;  5BO3 A;  4X58 A;  5BNE A;  1OTP A;  5BYT A;  4ZOK A;  4N93 A;  4X5A A;  2ELC A;  4OWM A;  2DSJ A;  4XR5 A;  1ZVW A;  4YI7 A;  4GA6 A;  4GA5 A;  4M0R A;  4X59 A;  4ZTV A;  4LHM A;  4X5D A;  3UU1 A;  4MUO A;  3TWP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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