4X8YA

Crystal structure of human pgrmc1 cytochrome b5-like domain
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
112
structure length
112
Chain Sequence
SPEFDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Membrane-associated progesterone receptor component 1
publication title Haem-dependent dimerization of PGRMC1/Sigma-2 receptor facilitates cancer proliferation and chemoresistance
pubmed doi rcsb
source organism Homo sapiens
total genus 33
structure length 112
sequence length 112
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 4x8yA00
1CXYA 1IB7A 3OZZB 1AWPA 2I96A 2AXXA 1EUEA 1KBIA 3X32A 1ES1A 3X33A 1DO9A 1M2MA 1B5MA 2KEOA 2M33A 1EHBA 4HILA 1MJ4A 1F04A 1BFXA 2IBJA 1I8CA 1I5UA 1LR6A 1LDCA 2OZ0A 1X3XA 1I87A 1B5AA 1BLVA 1FCBA 1J0QA 3X34A 1M2IA 4B8NA 3LF5A 1JEXA 1AW3A 1IEUA 1LJ0A 1M59A 1T0GA 1U9UA 1HKOA 1LTDA 1J03A 1U9MA 3KS0A 1MNYA 1M20A 1B5BA 1SOXA 2I89A 1SH4A 3MUSA 1AQAA 3X35A 1AXXA 4X8YA 3NERA 1ICCA 1LQXA 1NX7A 1LCOA 1IETA 1F03A 4HINA 1CYOA
chains in the Genus database with same CATH superfamily
1CXYA 1IB7A 3OZZB 1AWPA 2I96A 2AXXA 1EUEA 1KBIA 3X32A 1ES1A 3X33A 1DO9A 1M2MA 1B5MA 2KEOA 2M33A 1EHBA 4HILA 1MJ4A 1F04A 1BFXA 2IBJA 1I8CA 1I5UA 1LR6A 1LDCA 2OZ0A 1X3XA 1I87A 1B5AA 1BLVA 1FCBA 1J0QA 3X34A 1M2IA 4B8NA 3LF5A 1JEXA 1AW3A 1IEUA 1LJ0A 1M59A 1T0GA 1U9UA 1HKOA 1LTDA 1J03A 1U9MA 3KS0A 1MNYA 1M20A 1B5BA 1SOXA 2I89A 1SH4A 3MUSA 1AQAA 3X35A 1AXXA 4X8YA 3NERA 1ICCA 1LQXA 1NX7A 1LCOA 1IETA 1F03A 4HINA 1CYOA
chains in the Genus database with same CATH topology
1CXYA 1IB7A 3OZZB 1AWPA 2I96A 2AXXA 1EUEA 1KBIA 3X32A 1ES1A 3X33A 1DO9A 1M2MA 1B5MA 2KEOA 2M33A 1EHBA 4HILA 1MJ4A 1F04A 1BFXA 2IBJA 1I8CA 1I5UA 1LR6A 1LDCA 2OZ0A 1X3XA 1I87A 1B5AA 1BLVA 1FCBA 1J0QA 3X34A 1M2IA 4B8NA 3LF5A 1JEXA 1AW3A 1IEUA 1LJ0A 1M59A 1T0GA 1U9UA 1HKOA 1LTDA 1J03A 1U9MA 3KS0A 1MNYA 1M20A 1B5BA 1SOXA 2I89A 1SH4A 3MUSA 1AQAA 3X35A 1AXXA 4X8YA 3NERA 1ICCA 1LQXA 1NX7A 1LCOA 1IETA 1F03A 4HINA 1CYOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CXY A;  1IB7 A;  3OZZ B;  1AWP A;  2I96 A;  2AXX A;  1EUE A;  1KBI A;  3X32 A;  1ES1 A;  3X33 A;  1DO9 A;  1M2M A;  1B5M A;  2KEO A;  2M33 A;  1EHB A;  4HIL A;  1MJ4 A;  1F04 A;  1BFX A;  2IBJ A;  1I8C A;  1I5U A;  1LR6 A;  1LDC A;  2OZ0 A;  1X3X A;  1I87 A;  1B5A A;  1BLV A;  1FCB A;  1J0Q A;  3X34 A;  1M2I A;  4B8N A;  3LF5 A;  1JEX A;  1AW3 A;  1IEU A;  1LJ0 A;  1M59 A;  1T0G A;  1U9U A;  1HKO A;  1LTD A;  1J03 A;  1U9M A;  3KS0 A;  1MNY A;  1M20 A;  1B5B A;  1SOX A;  2I89 A;  1SH4 A;  3MUS A;  1AQA A;  3X35 A;  1AXX A;  4X8Y A;  3NER A;  1ICC A;  1LQX A;  1NX7 A;  1LCO A;  1IET A;  1F03 A;  4HIN A;  1CYO A; 
#chains in the Genus database with same CATH topology
 1CXY A;  1IB7 A;  3OZZ B;  1AWP A;  2I96 A;  2AXX A;  1EUE A;  1KBI A;  3X32 A;  1ES1 A;  3X33 A;  1DO9 A;  1M2M A;  1B5M A;  2KEO A;  2M33 A;  1EHB A;  4HIL A;  1MJ4 A;  1F04 A;  1BFX A;  2IBJ A;  1I8C A;  1I5U A;  1LR6 A;  1LDC A;  2OZ0 A;  1X3X A;  1I87 A;  1B5A A;  1BLV A;  1FCB A;  1J0Q A;  3X34 A;  1M2I A;  4B8N A;  3LF5 A;  1JEX A;  1AW3 A;  1IEU A;  1LJ0 A;  1M59 A;  1T0G A;  1U9U A;  1HKO A;  1LTD A;  1J03 A;  1U9M A;  3KS0 A;  1MNY A;  1M20 A;  1B5B A;  1SOX A;  2I89 A;  1SH4 A;  3MUS A;  1AQA A;  3X35 A;  1AXX A;  4X8Y A;  3NER A;  1ICC A;  1LQX A;  1NX7 A;  1LCO A;  1IET A;  1F03 A;  4HIN A;  1CYO A; 
#chains in the Genus database with same CATH homology
 1CXY A;  1IB7 A;  3OZZ B;  1AWP A;  2I96 A;  2AXX A;  1EUE A;  1KBI A;  3X32 A;  1ES1 A;  3X33 A;  1DO9 A;  1M2M A;  1B5M A;  2KEO A;  2M33 A;  1EHB A;  4HIL A;  1MJ4 A;  1F04 A;  1BFX A;  2IBJ A;  1I8C A;  1I5U A;  1LR6 A;  1LDC A;  2OZ0 A;  1X3X A;  1I87 A;  1B5A A;  1BLV A;  1FCB A;  1J0Q A;  3X34 A;  1M2I A;  4B8N A;  3LF5 A;  1JEX A;  1AW3 A;  1IEU A;  1LJ0 A;  1M59 A;  1T0G A;  1U9U A;  1HKO A;  1LTD A;  1J03 A;  1U9M A;  3KS0 A;  1MNY A;  1M20 A;  1B5B A;  1SOX A;  2I89 A;  1SH4 A;  3MUS A;  1AQA A;  3X35 A;  1AXX A;  4X8Y A;  3NER A;  1ICC A;  1LQX A;  1NX7 A;  1LCO A;  1IET A;  1F03 A;  4HIN A;  1CYO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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