4XB4A

Structure of the n-terminal domain of ocp binding canthaxanthin
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
146
structure length
137
Chain Sequence
MVPATIARFSQLNAEDQLALIWFAYLEMGKTSMQLAENALKEIQAMGPLQQTQAMCDLANRADTPLCRTYASWSPNIKLGFWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLRNAVVDMGFTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Carotenoid binding protein
molecule keywords Orange carotenoid-binding protein
publication title PHOTOSYNTHESIS. A 12 angstrom carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection.
pubmed doi rcsb
source organism Synechocystis sp.
total genus 51
structure length 137
sequence length 146
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-12-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.2090.10 Mainly Alpha Orthogonal Bundle orange carotenoid protein, domain 2 Orange carotenoid-binding protein, N-terminal domain 4xb4A00
5FCXA 3MG1A 4XB5A 5HGRA 3MG2A 4XB4A 5FCYA 3MG3A
chains in the Genus database with same CATH superfamily
5FCXA 3MG1A 4XB5A 5HGRA 3MG2A 4XB4A 5FCYA 3MG3A
chains in the Genus database with same CATH topology
5FCXA 3MG1A 4XB5A 5HGRA 3MG2A 4XB4A 5FCYA 3MG3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FCX A;  3MG1 A;  4XB5 A;  5HGR A;  3MG2 A;  4XB4 A;  5FCY A;  3MG3 A; 
#chains in the Genus database with same CATH topology
 5FCX A;  3MG1 A;  4XB5 A;  5HGR A;  3MG2 A;  4XB4 A;  5FCY A;  3MG3 A; 
#chains in the Genus database with same CATH homology
 5FCX A;  3MG1 A;  4XB5 A;  5HGR A;  3MG2 A;  4XB4 A;  5FCY A;  3MG3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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