4XBAA

Hnt3
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
199
structure length
199
Chain Sequence
SFRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKIDTPTSNLPTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLDKSVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Aprataxin-like protein
publication title DNA3'pp5'G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition.
pubmed doi rcsb
source organism Schizosaccharomyces pombe (strain 972 / atcc 24843)
total genus 68
structure length 199
sequence length 199
chains with identical sequence B
ec nomenclature ec 3.1.11.7: Adenosine-5'-diphospho-5'-(DNA) diphosphatase.
pdb deposition date 2014-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
A PF16278 zf-C2HE C2HE / C2H2 / C2HC zinc-binding finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 4xbaA00
3O1CA 3BL9A 2FITA 3BL7A 1Z84A 1EMSA 4NK0A 3I4SA 1KPFA 1HXPA 4NDIA 3ANOA 4ZGLA 5BV3A 2Q4LA 4NJXA 1ST4A 3WO5A 3RHNA 3N1TA 3I24A 1KPBA 3QGZA 1XMMA 4NJYA 3OXKA 4QDEA 3O1XA 4ZKLA 5IN3A 3O1ZA 3TW2A 3KSVA 3O0MA 3LB5A 4YKLB 4QEBA 1ST0A 4NDFA 1AV5A 1ZWJA 3N1SA 5CS2A 3SZQA 5IPEA 5I2FA 4FITA 3R6FA 1Y23A 5ED3A 4INIA 5EMTA 2OIKA 5IPDA 4NDHA 2FHIA 3IMIA 4RHNA 3BLAA 5IPBA 3FITA 5RHNA 4EQHA 4ZKVA 1FHIA 3L7XA 4QDVA 1XMLA 3SPDA 1KPEA 5IPCA 4EGUA 6FITA 1KPAA 2EO4A 2Q4HA 4EQGA 3OMFA 1HXQA 3SPLA 3P0TA 1VLRA 4INCA 1GUQA 1GUPA 1FITA 5FITA 6RHNA 5ED6A 5I2EA 3OJ7A 3NRDA 4NDGA 4EQEA 2H39A 1KPCA 3OHEA 3SP4A 4NJZA 4XBAA 1RZYA
chains in the Genus database with same CATH superfamily
3O1CA 3BL9A 2FITA 3BL7A 1Z84A 1EMSA 4NK0A 3I4SA 1KPFA 1HXPA 4NDIA 3ANOA 1L9VA 4ZGLA 2GU0A 5BV3A 2Q4LA 4NJXA 4I5VA 1ST4A 3WO5A 3RHNA 3N1TA 3I24A 1KPBA 3QGZA 1XMMA 4NJYA 3OXKA 4QDEA 3O1XA 4ZKLA 5IN3A 3O1ZA 3TW2A 3KSVA 3O0MA 3LB5A 4YKLB 4QEBA 1ST0A 4NDFA 1AV5A 1ZWJA 3N1SA 5CS2A 3SZQA 5IPEA 4G0JA 2R7PA 5I2FA 2POFA 4FITA 3R6FA 1Y23A 5ED3A 4INIA 5EMTA 2OIKA 5IPDA 4I5WA 4NDHA 2R7JA 2FHIA 3IMIA 4RHNA 3BLAA 5IPBA 3FITA 5RHNA 4EQHA 4ZKVA 1FHIA 3L7XA 4QDVA 1XMLA 3SPDA 1KPEA 4G0AA 5IPCA 4EGUA 6FITA 1KPAA 2LJWA 2R8FA 2EO4A 2Q4HA 4EQGA 3OMFA 1HXQA 3SPLA 2R7CA 3P0TA 1VLRA 4INCA 1GUQA 1GUPA 4I5TA 1FITA 5FITA 6RHNA 5ED6A 5I2EA 3OJ7A 3NRDA 4NDGA 4EQEA 2H39A 1KPCA 3OHEA 3SP4A 4NJZA 4XBAA 1RZYA
chains in the Genus database with same CATH topology
3O1CA 3BL9A 2FITA 3BL7A 1Z84A 1EMSA 4NK0A 3I4SA 1KPFA 1HXPA 4NDIA 3ANOA 4ZGLA 5BV3A 2Q4LA 4NJXA 1ST4A 3WO5A 3RHNA 3N1TA 3I24A 1KPBA 3QGZA 1XMMA 4NJYA 3OXKA 4QDEA 3O1XA 4ZKLA 5IN3A 3O1ZA 3TW2A 3KSVA 3O0MA 3LB5A 4YKLB 4QEBA 1ST0A 4NDFA 1AV5A 1ZWJA 3N1SA 5CS2A 3SZQA 5IPEA 5I2FA 4FITA 3R6FA 1Y23A 5ED3A 4INIA 5EMTA 2OIKA 5IPDA 4NDHA 2FHIA 3IMIA 4RHNA 3BLAA 5IPBA 3FITA 5RHNA 4EQHA 4ZKVA 1FHIA 3L7XA 4QDVA 1XMLA 3SPDA 1KPEA 5IPCA 4EGUA 6FITA 1KPAA 2EO4A 2Q4HA 4EQGA 3OMFA 1HXQA 3SPLA 3P0TA 1VLRA 4INCA 1GUQA 1GUPA 1FITA 5FITA 6RHNA 5ED6A 5I2EA 3OJ7A 3NRDA 4NDGA 4EQEA 2H39A 1KPCA 3OHEA 3SP4A 4NJZA 4XBAA 1RZYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O1C A;  3BL9 A;  2FIT A;  3BL7 A;  1Z84 A;  1EMS A;  4NK0 A;  3I4S A;  1KPF A;  1HXP A;  4NDI A;  3ANO A;  4ZGL A;  5BV3 A;  2Q4L A;  4NJX A;  1ST4 A;  3WO5 A;  3RHN A;  3N1T A;  3I24 A;  1KPB A;  3QGZ A;  1XMM A;  4NJY A;  3OXK A;  4QDE A;  3O1X A;  4ZKL A;  5IN3 A;  3O1Z A;  3TW2 A;  3KSV A;  3O0M A;  3LB5 A;  4YKL B;  4QEB A;  1ST0 A;  4NDF A;  1AV5 A;  1ZWJ A;  3N1S A;  5CS2 A;  3SZQ A;  5IPE A;  5I2F A;  4FIT A;  3R6F A;  1Y23 A;  5ED3 A;  4INI A;  5EMT A;  2OIK A;  5IPD A;  4NDH A;  2FHI A;  3IMI A;  4RHN A;  3BLA A;  5IPB A;  3FIT A;  5RHN A;  4EQH A;  4ZKV A;  1FHI A;  3L7X A;  4QDV A;  1XML A;  3SPD A;  1KPE A;  5IPC A;  4EGU A;  6FIT A;  1KPA A;  2EO4 A;  2Q4H A;  4EQG A;  3OMF A;  1HXQ A;  3SPL A;  3P0T A;  1VLR A;  4INC A;  1GUQ A;  1GUP A;  1FIT A;  5FIT A;  6RHN A;  5ED6 A;  5I2E A;  3OJ7 A;  3NRD A;  4NDG A;  4EQE A;  2H39 A;  1KPC A;  3OHE A;  3SP4 A;  4NJZ A;  4XBA A;  1RZY A; 
#chains in the Genus database with same CATH topology
 3O1C A;  3BL9 A;  2FIT A;  3BL7 A;  1Z84 A;  1EMS A;  4NK0 A;  3I4S A;  1KPF A;  1HXP A;  4NDI A;  3ANO A;  1L9V A;  4ZGL A;  2GU0 A;  5BV3 A;  2Q4L A;  4NJX A;  4I5V A;  1ST4 A;  3WO5 A;  3RHN A;  3N1T A;  3I24 A;  1KPB A;  3QGZ A;  1XMM A;  4NJY A;  3OXK A;  4QDE A;  3O1X A;  4ZKL A;  5IN3 A;  3O1Z A;  3TW2 A;  3KSV A;  3O0M A;  3LB5 A;  4YKL B;  4QEB A;  1ST0 A;  4NDF A;  1AV5 A;  1ZWJ A;  3N1S A;  5CS2 A;  3SZQ A;  5IPE A;  4G0J A;  2R7P A;  5I2F A;  2POF A;  4FIT A;  3R6F A;  1Y23 A;  5ED3 A;  4INI A;  5EMT A;  2OIK A;  5IPD A;  4I5W A;  4NDH A;  2R7J A;  2FHI A;  3IMI A;  4RHN A;  3BLA A;  5IPB A;  3FIT A;  5RHN A;  4EQH A;  4ZKV A;  1FHI A;  3L7X A;  4QDV A;  1XML A;  3SPD A;  1KPE A;  4G0A A;  5IPC A;  4EGU A;  6FIT A;  1KPA A;  2LJW A;  2R8F A;  2EO4 A;  2Q4H A;  4EQG A;  3OMF A;  1HXQ A;  3SPL A;  2R7C A;  3P0T A;  1VLR A;  4INC A;  1GUQ A;  1GUP A;  4I5T A;  1FIT A;  5FIT A;  6RHN A;  5ED6 A;  5I2E A;  3OJ7 A;  3NRD A;  4NDG A;  4EQE A;  2H39 A;  1KPC A;  3OHE A;  3SP4 A;  4NJZ A;  4XBA A;  1RZY A; 
#chains in the Genus database with same CATH homology
 3O1C A;  3BL9 A;  2FIT A;  3BL7 A;  1Z84 A;  1EMS A;  4NK0 A;  3I4S A;  1KPF A;  1HXP A;  4NDI A;  3ANO A;  4ZGL A;  5BV3 A;  2Q4L A;  4NJX A;  1ST4 A;  3WO5 A;  3RHN A;  3N1T A;  3I24 A;  1KPB A;  3QGZ A;  1XMM A;  4NJY A;  3OXK A;  4QDE A;  3O1X A;  4ZKL A;  5IN3 A;  3O1Z A;  3TW2 A;  3KSV A;  3O0M A;  3LB5 A;  4YKL B;  4QEB A;  1ST0 A;  4NDF A;  1AV5 A;  1ZWJ A;  3N1S A;  5CS2 A;  3SZQ A;  5IPE A;  5I2F A;  4FIT A;  3R6F A;  1Y23 A;  5ED3 A;  4INI A;  5EMT A;  2OIK A;  5IPD A;  4NDH A;  2FHI A;  3IMI A;  4RHN A;  3BLA A;  5IPB A;  3FIT A;  5RHN A;  4EQH A;  4ZKV A;  1FHI A;  3L7X A;  4QDV A;  1XML A;  3SPD A;  1KPE A;  5IPC A;  4EGU A;  6FIT A;  1KPA A;  2EO4 A;  2Q4H A;  4EQG A;  3OMF A;  1HXQ A;  3SPL A;  3P0T A;  1VLR A;  4INC A;  1GUQ A;  1GUP A;  1FIT A;  5FIT A;  6RHN A;  5ED6 A;  5I2E A;  3OJ7 A;  3NRD A;  4NDG A;  4EQE A;  2H39 A;  1KPC A;  3OHE A;  3SP4 A;  4NJZ A;  4XBA A;  1RZY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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