4XEIF

Orthorhombic isomorph of bovine arp2/3 complex
Total Genus 48
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
168
structure length
168
Chain Sequence
MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural protein
molecule keywords Actin-related protein 3
publication title Crystals of the Arp2/3 complex in two new space groups with structural information about actin-related protein 2 and potential WASP binding sites.
pubmed doi rcsb
total genus 48
structure length 168
sequence length 168
ec nomenclature
pdb deposition date 2014-12-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF05856 ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 4xeiF00
3DXKF 3UKUD 2P9PD 3DXMF 3DWLD 1TYQD 4JD2F 2P9KF 2P9LD 4XEID 3ULED 2P9ND 1K8KF 2P9NF 2P9SF 2P9UD 3UKUF 2P9PF 3UKRD 3DWLF 1TYQF 3RSED 1U2VD 2P9ID 2P9LF 3DXKD 4XEIF 3DXMD 4JD2D 3ULEF 2P9KD 2P9UF 3UKRF 3RSEF 1U2VF 2P9IF 1K8KD 2P9SD
chains in the Genus database with same CATH superfamily
3DXKF 3UKUD 2P9PD 3DXMF 1L2WA 1TYQD 3DWLD 4JD2F 4H5BA 3TU3A 3UKUF 2P9KF 4JMFB 2P9LD 1XKPC 2BHOA 4XEID 3ULED 2P9ND 3KXYA 1N5BA 2XGAA 2BSJA 1K8KF 4G6TA 1TTWA 2BSHA 2P9NF 1XKPB 2P9SF 2P9PF 2OD0A 2P9UD 1TYQF 2MQDA 3DWLF 1K3EA 3RSED 1JYAA 3UKRD 1U2VD 2BSIA 1JYOA 2FM8A 2P9ID 3EPUA 2P9LF 2P9SD 3DXKD 3CXJA 3DXMD 4JD2D 1K6ZA 4XEIF 3ULEF 1K3SA 2P9KD 2KC5A 1S28A 2DYTA 2P9UF 4GF3A 3UKRF 3RSEF 2LPUA 3VX7B 2PLGA 3VX8B 4EBRA 1U2VF 2P9IF 4AKXA 1K8KD 4GSLC 1RY9A
chains in the Genus database with same CATH topology
3DXKF 3UKUD 2P9PD 3DXMF 1L2WA 1TYQD 3DWLD 4JD2F 4H5BA 3TU3A 3UKUF 2P9KF 4JMFB 2P9LD 1XKPC 2BHOA 4XEID 3ULED 2P9ND 3KXYA 1N5BA 2XGAA 2BSJA 1K8KF 4G6TA 1TTWA 2BSHA 2P9NF 1XKPB 2P9SF 2P9PF 2P9UD 3DWLF 1TYQF 2MQDA 3RSED 1K3EA 3UKRD 1JYAA 1U2VD 2BSIA 1JYOA 2FM8A 2P9ID 3EPUA 2P9LF 2P9SD 3DXKD 3CXJA 3DXMD 4JD2D 1K6ZA 4XEIF 3ULEF 1K3SA 2P9KD 2KC5A 1S28A 2DYTA 2P9UF 4GF3A 3UKRF 3RSEF 2LPUA 3VX7B 2PLGA 3VX8B 4EBRA 1U2VF 2P9IF 4AKXA 1K8KD 4GSLC 1RY9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DXK F;  3UKU D;  2P9P D;  3DXM F;  3DWL D;  1TYQ D;  4JD2 F;  2P9K F;  2P9L D;  4XEI D;  3ULE D;  2P9N D;  1K8K F;  2P9N F;  2P9S F;  2P9U D;  3UKU F;  2P9P F;  3UKR D;  3DWL F;  1TYQ F;  3RSE D;  1U2V D;  2P9I D;  2P9L F;  3DXK D;  4XEI F;  3DXM D;  4JD2 D;  3ULE F;  2P9K D;  2P9U F;  3UKR F;  3RSE F;  1U2V F;  2P9I F;  1K8K D;  2P9S D; 
#chains in the Genus database with same CATH topology
 3DXK F;  3UKU D;  2P9P D;  3DXM F;  1L2W A;  1TYQ D;  3DWL D;  4JD2 F;  4H5B A;  3TU3 A;  3UKU F;  2P9K F;  4JMF B;  2P9L D;  1XKP C;  2BHO A;  4XEI D;  3ULE D;  2P9N D;  3KXY A;  1N5B A;  2XGA A;  2BSJ A;  1K8K F;  4G6T A;  1TTW A;  2BSH A;  2P9N F;  1XKP B;  2P9S F;  2P9P F;  2OD0 A;  2P9U D;  1TYQ F;  2MQD A;  3DWL F;  1K3E A;  3RSE D;  1JYA A;  3UKR D;  1U2V D;  2BSI A;  1JYO A;  2FM8 A;  2P9I D;  3EPU A;  2P9L F;  2P9S D;  3DXK D;  3CXJ A;  3DXM D;  4JD2 D;  1K6Z A;  4XEI F;  3ULE F;  1K3S A;  2P9K D;  2KC5 A;  1S28 A;  2DYT A;  2P9U F;  4GF3 A;  3UKR F;  3RSE F;  2LPU A;  3VX7 B;  2PLG A;  3VX8 B;  4EBR A;  1U2V F;  2P9I F;  4AKX A;  1K8K D;  4GSL C;  1RY9 A; 
#chains in the Genus database with same CATH homology
 3DXK F;  3UKU D;  2P9P D;  3DXM F;  1L2W A;  1TYQ D;  3DWL D;  4JD2 F;  4H5B A;  3TU3 A;  3UKU F;  2P9K F;  4JMF B;  2P9L D;  1XKP C;  2BHO A;  4XEI D;  3ULE D;  2P9N D;  3KXY A;  1N5B A;  2XGA A;  2BSJ A;  1K8K F;  4G6T A;  1TTW A;  2BSH A;  2P9N F;  1XKP B;  2P9S F;  2P9P F;  2P9U D;  3DWL F;  1TYQ F;  2MQD A;  3RSE D;  1K3E A;  3UKR D;  1JYA A;  1U2V D;  2BSI A;  1JYO A;  2FM8 A;  2P9I D;  3EPU A;  2P9L F;  2P9S D;  3DXK D;  3CXJ A;  3DXM D;  4JD2 D;  1K6Z A;  4XEI F;  3ULE F;  1K3S A;  2P9K D;  2KC5 A;  1S28 A;  2DYT A;  2P9U F;  4GF3 A;  3UKR F;  3RSE F;  2LPU A;  3VX7 B;  2PLG A;  3VX8 B;  4EBR A;  1U2V F;  2P9I F;  4AKX A;  1K8K D;  4GSL C;  1RY9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...