4XHYA

Nadh:fmn oxidoreductase from paracoccus denitrificans
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
164
structure length
161
Chain Sequence
EITFHPAARLLREALGRFATGVTVVTTAGPQGPLGMTVNSFSSVSLEPPLVLWCPARTSARHAAFAEAGAWSVHVLGSEQLETCLRFTRGGRQFEGLDTVLTPEGVPVIPGVAARFDCAAHAAHEAGDHSVLIGRVLRVTVAGPGDHPLVFAAGRFGQFEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Flavin reductase domain protein, FMN-binding protein
publication title Biochemical properties and crystal structure of the flavin reductase FerA from Paracoccus denitrificans.
pubmed doi rcsb
source organism Paracoccus denitrificans pd 1222
total genus 32
structure length 161
sequence length 164
ec nomenclature
pdb deposition date 2015-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4xhyA00
1W3RA 1AXJA 2FURA 4Y9IA 2IG6A 3BA3A 1I0RA 1RZ0A 3FKHA 4HMWA 3R5ZA 2QEAA 3H96A 3HMZA 2HHZA 3ZOHA 1T9MA 1I0SA 2FG9A 2IABA 2NR4A 3A6RA 1W9AA 4F07A 1G77A 2HQ9A 1G76A 3NFWA 3VY2A 3U0IA 3AMFA 2D37A 3K88A 3VYAA 2VPAA 1W3PA 3U5WA 2I51A 3R5WA 2D5MA 1TY9A 4L82A 3HY8A 1YLNA 2X1KA 2R6VA 3SWJA 1XHNA 2IMLA 3CP3A 3ZOGA 3KYGA 3DMBA 2D36A 2HTDA 2GJGA 1W3OA 1USCA 3K87A 3ZODA 5CHOA 3RH7A 3R5LA 3A20A 4XJ2A 3GASA 3BNKA 2A2JA 2ASFA 3F7EA 3ZOCA 1WV4A 2E83A 4QVBA 4HX6A 3ZOFA 1Y30A 4XHYA 2PTFA 3A6QA 5CHEC 1RFEA 3IN6A 3VY5A 2R0XA 1CI0A 3KYFA 3B5MA 4ZKYA 3AWHA 4YWNA 2ARZA 4HMVA 4HMUA 4Z85A 1WGBA 3ZOEA 1YOAA 2AQ6A 3CB0A 4IRAA 1WLIA 3BPKA 2FHQA 3PFTA 1DNLA 2X1JA 1WLKA 1FLMA 2ECRA 2OL5A 1VL7A 1JNWA 2HQ7A 3DB0A 1RZ1A 3K86A 3EC6A 3R5YA 2ED4A 5ESCA 2QCKA 3R5RA 2ECUA 4HMXA 1USFA 4YBNA 2RDEA 4N7RC 1G78A 3R5PA 2Q9KA 4HMSA 5BNCA 2RE7A 3E4VA 3U34A 3FGEA 3TGVA 4R82A 2I02A 3DNHA 1NRGA 4HMTA 5JABA 1XXOA 3U35A 1W3QA 2D38A 2OU5A 1G79A 1EJEA 2HTIA
chains in the Genus database with same CATH superfamily
1W3RA 1AXJA 2FURA 4Y9IA 2IG6A 3BA3A 4HKHA 1I0RA 1RZ0A 3FKHA 4HMWA 4UHVA 3R5ZA 2QEAA 3H96A 3HMZA 2HHZA 3ZOHA 1T9MA 1I0SA 2FG9A 2IABA 2NR4A 3A6RA 1W9AA 4F07A 1G77A 2HQ9A 1G76A 3NFWA 3VY2A 3U0IA 3AMFA 2D37A 3K88A 3VYAA 2VPAA 1W3PA 3U5WA 2I51A 1Y12A 3R5WA 4W64A 2D5MA 1TY9A 4L82A 3HY8A 1YLNA 2X1KA 2R6VA 3SWJA 1XHNA 2IMLA 3CP3A 3ZOGA 3KYGA 3DMBA 2D36A 2HTDA 2GJGA 1W3OA 1USCA 3K87A 3ZODA 5CHOA 4MTKA 3EAAA 3RH7A 3R5LA 3A20A 4XJ2A 3GASA 3BNKA 2A2JA 2ASFA 3F7EA 4TV4A 3ZOCA 1WV4A 2E83A 2L1TA 2K4QA 4QVBA 4HX6A 3ZOFA 3HE1A 1Y30A 4XHYA 2PTFA 2GUJA 3A6QA 1RFEA 3IN6A 5CHEC 3V4HA 3VY5A 2R0XA 1CI0A 3KYFA 3B5MA 4ZKYA 3AWHA 4YWNA 2P5ZX 2ARZA 4HMVA 4HMUA 4Z85A 1WGBA 3ZOEA 1YOAA 2AQ6A 3CB0A 4IRAA 1WLIA 3BPKA 2FHQA 3PFTA 1DNLA 2X1JA 1WLKA 1FLMA 2ECRA 2OL5A 1VL7A 1JNWA 2HQ7A 3DB0A 1RZ1A 3K86A 3EC6A 3R5YA 2ED4A 5ESCA 2QCKA 3R5RA 2ECUA 4HMXA 1USFA 4YBNA 2RDEA 4N7RC 1G78A 3R5PA 2Q9KA 4HMSA 5BNCA 2RE7A 3E4VA 3U34A 3FGEA 3TGVA 4R82A 2I02A 3DNHA 1NRGA 4HMTA 5JABA 1XXOA 3U35A 1W3QA 2D38A 2OU5A 1G79A 1EJEA 2HTIA
chains in the Genus database with same CATH topology
1W3RA 1AXJA 2FURA 4Y9IA 2IG6A 3BA3A 1I0RA 1RZ0A 3FKHA 4HMWA 3R5ZA 2QEAA 3H96A 3HMZA 2HHZA 3ZOHA 1T9MA 1I0SA 2FG9A 2IABA 2NR4A 3A6RA 1W9AA 4F07A 1G77A 2HQ9A 1G76A 3NFWA 3VY2A 3U0IA 3AMFA 2D37A 3K88A 3VYAA 2VPAA 1W3PA 3U5WA 2I51A 3R5WA 2D5MA 1TY9A 4L82A 3HY8A 1YLNA 2X1KA 2R6VA 3SWJA 1XHNA 2IMLA 3CP3A 3ZOGA 3KYGA 3DMBA 2D36A 2HTDA 2GJGA 1W3OA 1USCA 3K87A 3ZODA 5CHOA 3RH7A 3R5LA 3A20A 4XJ2A 3GASA 3BNKA 2A2JA 2ASFA 3F7EA 3ZOCA 1WV4A 2E83A 4QVBA 4HX6A 3ZOFA 1Y30A 4XHYA 2PTFA 3A6QA 5CHEC 1RFEA 3IN6A 3VY5A 2R0XA 1CI0A 3KYFA 3B5MA 4ZKYA 3AWHA 4YWNA 2ARZA 4HMVA 4HMUA 4Z85A 1WGBA 3ZOEA 1YOAA 2AQ6A 3CB0A 4IRAA 1WLIA 3BPKA 2FHQA 3PFTA 1DNLA 2X1JA 1WLKA 1FLMA 2ECRA 2OL5A 1VL7A 1JNWA 2HQ7A 3DB0A 1RZ1A 3K86A 3EC6A 3R5YA 2ED4A 5ESCA 2QCKA 3R5RA 2ECUA 4HMXA 1USFA 4YBNA 2RDEA 4N7RC 1G78A 3R5PA 2Q9KA 4HMSA 5BNCA 2RE7A 3E4VA 3U34A 3FGEA 3TGVA 4R82A 2I02A 3DNHA 1NRGA 4HMTA 5JABA 1XXOA 3U35A 1W3QA 2D38A 2OU5A 1G79A 1EJEA 2HTIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W3R A;  1AXJ A;  2FUR A;  4Y9I A;  2IG6 A;  3BA3 A;  1I0R A;  1RZ0 A;  3FKH A;  4HMW A;  3R5Z A;  2QEA A;  3H96 A;  3HMZ A;  2HHZ A;  3ZOH A;  1T9M A;  1I0S A;  2FG9 A;  2IAB A;  2NR4 A;  3A6R A;  1W9A A;  4F07 A;  1G77 A;  2HQ9 A;  1G76 A;  3NFW A;  3VY2 A;  3U0I A;  3AMF A;  2D37 A;  3K88 A;  3VYA A;  2VPA A;  1W3P A;  3U5W A;  2I51 A;  3R5W A;  2D5M A;  1TY9 A;  4L82 A;  3HY8 A;  1YLN A;  2X1K A;  2R6V A;  3SWJ A;  1XHN A;  2IML A;  3CP3 A;  3ZOG A;  3KYG A;  3DMB A;  2D36 A;  2HTD A;  2GJG A;  1W3O A;  1USC A;  3K87 A;  3ZOD A;  5CHO A;  3RH7 A;  3R5L A;  3A20 A;  4XJ2 A;  3GAS A;  3BNK A;  2A2J A;  2ASF A;  3F7E A;  3ZOC A;  1WV4 A;  2E83 A;  4QVB A;  4HX6 A;  3ZOF A;  1Y30 A;  4XHY A;  2PTF A;  3A6Q A;  5CHE C;  1RFE A;  3IN6 A;  3VY5 A;  2R0X A;  1CI0 A;  3KYF A;  3B5M A;  4ZKY A;  3AWH A;  4YWN A;  2ARZ A;  4HMV A;  4HMU A;  4Z85 A;  1WGB A;  3ZOE A;  1YOA A;  2AQ6 A;  3CB0 A;  4IRA A;  1WLI A;  3BPK A;  2FHQ A;  3PFT A;  1DNL A;  2X1J A;  1WLK A;  1FLM A;  2ECR A;  2OL5 A;  1VL7 A;  1JNW A;  2HQ7 A;  3DB0 A;  1RZ1 A;  3K86 A;  3EC6 A;  3R5Y A;  2ED4 A;  5ESC A;  2QCK A;  3R5R A;  2ECU A;  4HMX A;  1USF A;  4YBN A;  2RDE A;  4N7R C;  1G78 A;  3R5P A;  2Q9K A;  4HMS A;  5BNC A;  2RE7 A;  3E4V A;  3U34 A;  3FGE A;  3TGV A;  4R82 A;  2I02 A;  3DNH A;  1NRG A;  4HMT A;  5JAB A;  1XXO A;  3U35 A;  1W3Q A;  2D38 A;  2OU5 A;  1G79 A;  1EJE A;  2HTI A; 
#chains in the Genus database with same CATH topology
 1W3R A;  1AXJ A;  2FUR A;  4Y9I A;  2IG6 A;  3BA3 A;  4HKH A;  1I0R A;  1RZ0 A;  3FKH A;  4HMW A;  4UHV A;  3R5Z A;  2QEA A;  3H96 A;  3HMZ A;  2HHZ A;  3ZOH A;  1T9M A;  1I0S A;  2FG9 A;  2IAB A;  2NR4 A;  3A6R A;  1W9A A;  4F07 A;  1G77 A;  2HQ9 A;  1G76 A;  3NFW A;  3VY2 A;  3U0I A;  3AMF A;  2D37 A;  3K88 A;  3VYA A;  2VPA A;  1W3P A;  3U5W A;  2I51 A;  1Y12 A;  3R5W A;  4W64 A;  2D5M A;  1TY9 A;  4L82 A;  3HY8 A;  1YLN A;  2X1K A;  2R6V A;  3SWJ A;  1XHN A;  2IML A;  3CP3 A;  3ZOG A;  3KYG A;  3DMB A;  2D36 A;  2HTD A;  2GJG A;  1W3O A;  1USC A;  3K87 A;  3ZOD A;  5CHO A;  4MTK A;  3EAA A;  3RH7 A;  3R5L A;  3A20 A;  4XJ2 A;  3GAS A;  3BNK A;  2A2J A;  2ASF A;  3F7E A;  4TV4 A;  3ZOC A;  1WV4 A;  2E83 A;  2L1T A;  2K4Q A;  4QVB A;  4HX6 A;  3ZOF A;  3HE1 A;  1Y30 A;  4XHY A;  2PTF A;  2GUJ A;  3A6Q A;  1RFE A;  3IN6 A;  5CHE C;  3V4H A;  3VY5 A;  2R0X A;  1CI0 A;  3KYF A;  3B5M A;  4ZKY A;  3AWH A;  4YWN A;  2P5Z X;  2ARZ A;  4HMV A;  4HMU A;  4Z85 A;  1WGB A;  3ZOE A;  1YOA A;  2AQ6 A;  3CB0 A;  4IRA A;  1WLI A;  3BPK A;  2FHQ A;  3PFT A;  1DNL A;  2X1J A;  1WLK A;  1FLM A;  2ECR A;  2OL5 A;  1VL7 A;  1JNW A;  2HQ7 A;  3DB0 A;  1RZ1 A;  3K86 A;  3EC6 A;  3R5Y A;  2ED4 A;  5ESC A;  2QCK A;  3R5R A;  2ECU A;  4HMX A;  1USF A;  4YBN A;  2RDE A;  4N7R C;  1G78 A;  3R5P A;  2Q9K A;  4HMS A;  5BNC A;  2RE7 A;  3E4V A;  3U34 A;  3FGE A;  3TGV A;  4R82 A;  2I02 A;  3DNH A;  1NRG A;  4HMT A;  5JAB A;  1XXO A;  3U35 A;  1W3Q A;  2D38 A;  2OU5 A;  1G79 A;  1EJE A;  2HTI A; 
#chains in the Genus database with same CATH homology
 1W3R A;  1AXJ A;  2FUR A;  4Y9I A;  2IG6 A;  3BA3 A;  1I0R A;  1RZ0 A;  3FKH A;  4HMW A;  3R5Z A;  2QEA A;  3H96 A;  3HMZ A;  2HHZ A;  3ZOH A;  1T9M A;  1I0S A;  2FG9 A;  2IAB A;  2NR4 A;  3A6R A;  1W9A A;  4F07 A;  1G77 A;  2HQ9 A;  1G76 A;  3NFW A;  3VY2 A;  3U0I A;  3AMF A;  2D37 A;  3K88 A;  3VYA A;  2VPA A;  1W3P A;  3U5W A;  2I51 A;  3R5W A;  2D5M A;  1TY9 A;  4L82 A;  3HY8 A;  1YLN A;  2X1K A;  2R6V A;  3SWJ A;  1XHN A;  2IML A;  3CP3 A;  3ZOG A;  3KYG A;  3DMB A;  2D36 A;  2HTD A;  2GJG A;  1W3O A;  1USC A;  3K87 A;  3ZOD A;  5CHO A;  3RH7 A;  3R5L A;  3A20 A;  4XJ2 A;  3GAS A;  3BNK A;  2A2J A;  2ASF A;  3F7E A;  3ZOC A;  1WV4 A;  2E83 A;  4QVB A;  4HX6 A;  3ZOF A;  1Y30 A;  4XHY A;  2PTF A;  3A6Q A;  5CHE C;  1RFE A;  3IN6 A;  3VY5 A;  2R0X A;  1CI0 A;  3KYF A;  3B5M A;  4ZKY A;  3AWH A;  4YWN A;  2ARZ A;  4HMV A;  4HMU A;  4Z85 A;  1WGB A;  3ZOE A;  1YOA A;  2AQ6 A;  3CB0 A;  4IRA A;  1WLI A;  3BPK A;  2FHQ A;  3PFT A;  1DNL A;  2X1J A;  1WLK A;  1FLM A;  2ECR A;  2OL5 A;  1VL7 A;  1JNW A;  2HQ7 A;  3DB0 A;  1RZ1 A;  3K86 A;  3EC6 A;  3R5Y A;  2ED4 A;  5ESC A;  2QCK A;  3R5R A;  2ECU A;  4HMX A;  1USF A;  4YBN A;  2RDE A;  4N7R C;  1G78 A;  3R5P A;  2Q9K A;  4HMS A;  5BNC A;  2RE7 A;  3E4V A;  3U34 A;  3FGE A;  3TGV A;  4R82 A;  2I02 A;  3DNH A;  1NRG A;  4HMT A;  5JAB A;  1XXO A;  3U35 A;  1W3Q A;  2D38 A;  2OU5 A;  1G79 A;  1EJE A;  2HTI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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