The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
32
|
sequence length |
164
|
structure length |
161
|
Chain Sequence |
EITFHPAARLLREALGRFATGVTVVTTAGPQGPLGMTVNSFSSVSLEPPLVLWCPARTSARHAAFAEAGAWSVHVLGSEQLETCLRFTRGGRQFEGLDTVLTPEGVPVIPGVAARFDCAAHAAHEAGDHSVLIGRVLRVTVAGPGDHPLVFAAGRFGQFEP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Biochemical properties and crystal structure of the flavin reductase FerA from Paracoccus denitrificans.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Paracoccus denitrificans pd 1222
|
| molecule keywords |
Flavin reductase domain protein, FMN-binding protein
|
| total genus |
32
|
| structure length |
161
|
| sequence length |
164
|
| ec nomenclature | |
| pdb deposition date | 2015-01-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01613 | Flavin_Reduct | Flavin reductase like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Pnp Oxidase; Chain A | Electron Transport, Fmn-binding Protein; Chain A |
#chains in the Genus database with same CATH superfamily 1I0S A; 4IRA A; 2RDE A; 3R5P A; 5BNC A; 2PTF A; 3CB0 A; 3PFT A; 3NFW A; 1WV4 A; 1I0R A; 2R6V A; 2X1J A; 1Y30 A; 4ZKY A; 3A6Q A; 1TY9 A; 1AXJ A; 2ECU A; 3U0I A; 3VY5 A; 2VPA A; 1RZ0 A; 3BA3 A; 2Q9K A; 2X1K A; 3GAS A; 1WLK A; 3DB0 A; 4L82 A; 3RH7 A; 2ECR A; 2FHQ A; 4HMS A; 4QVB A; 3U35 A; 2I02 A; 2D37 A; 4R82 A; 4XJ2 A; 2D36 A; 3U5W A; 3R5Z A; 3A20 A; 4HX6 A; 1G77 A; 1EJE A; 1WLI A; 3ZOG A; 3CP3 A; 3ZOC A; 3K87 A; 2I51 A; 1JNW A; 3BNK A; 1FLM A; 3AWH A; 3ZOF A; 1CI0 A; 2HQ7 A; 2AQ6 A; 2R0X A; 1XXO A; 1RZ1 A; 1W3Q A; 2RE7 A; 3R5R A; 1G76 A; 3ZOH A; 2HTD A; 4HMW A; 4Z85 A; 2E83 A; 4XHY A; 2A2J A; 5CHO A; 1VL7 A; 5CHE C; 3K88 A; 2QCK A; 1W9A A; 3DNH A; 3TGV A; 4Y9I A; 1USF A; 4HMT A; 2D38 A; 1W3P A; 3E4V A; 3H96 A; 1WGB A; 3F7E A; 3R5W A; 3U34 A; 3KYF A; 2IG6 A; 2IML A; 4N7R C; 1DNL A; 3R5Y A; 3ZOE A; 2ARZ A; 2ED4 A; 2OU5 A; 3K86 A; 1YOA A; 3B5M A; 3ZOD A; 2HTI A; 3FGE A; 4HMX A; 1RFE A; 1W3R A; 2D5M A; 2OL5 A; 1USC A; 1XHN A; 2FUR A; 3VYA A; 3IN6 A; 5ESC A; 3SWJ A; 2NR4 A; 3AMF A; 2FG9 A; 1T9M A; 3VY2 A; 2QEA A; 2HHZ A; 3A6R A; 1W3O A; 3DMB A; 3HMZ A; 4YBN A; 4F07 A; 3BPK A; 3R5L A; 2HQ9 A; 3FKH A; 2IAB A; 1G79 A; 3EC6 A; 1NRG A; 2ASF A; 4HMV A; 1YLN A; 2GJG A; 3HY8 A; 4YWN A; 1G78 A; 3KYG A; 4HMU A; 5JAB A; #chains in the Genus database with same CATH topology 1I0S A; 4IRA A; 2RDE A; 3R5P A; 5BNC A; 2PTF A; 3CB0 A; 3PFT A; 3NFW A; 1WV4 A; 2K4Q A; 2L1T A; 1I0R A; 4TV4 A; 2R6V A; 2X1J A; 1Y30 A; 4ZKY A; 3A6Q A; 1TY9 A; 3V4H A; 1AXJ A; 2ECU A; 3U0I A; 3VY5 A; 4UHV A; 2VPA A; 1RZ0 A; 3BA3 A; 2Q9K A; 2X1K A; 3GAS A; 1WLK A; 3DB0 A; 4L82 A; 3RH7 A; 2ECR A; 2FHQ A; 4HMS A; 4QVB A; 3U35 A; 2I02 A; 2D37 A; 4R82 A; 4XJ2 A; 2D36 A; 3U5W A; 3R5Z A; 3A20 A; 4HX6 A; 1G77 A; 1EJE A; 1WLI A; 3ZOG A; 3CP3 A; 3ZOC A; 4W64 A; 3K87 A; 2I51 A; 1JNW A; 3BNK A; 1FLM A; 3AWH A; 3ZOF A; 1CI0 A; 2P5Z X; 2HQ7 A; 2AQ6 A; 2R0X A; 1XXO A; 1RZ1 A; 1W3Q A; 2RE7 A; 3R5R A; 1G76 A; 3ZOH A; 2HTD A; 4HMW A; 4Z85 A; 2E83 A; 4XHY A; 4HKH A; 2A2J A; 5CHO A; 1VL7 A; 5CHE C; 3K88 A; 3HE1 A; 2QCK A; 1W9A A; 3DNH A; 3TGV A; 4Y9I A; 1USF A; 4HMT A; 2D38 A; 1W3P A; 3E4V A; 4MTK A; 3H96 A; 1WGB A; 3F7E A; 3R5W A; 3U34 A; 3KYF A; 2IG6 A; 2IML A; 4N7R C; 1DNL A; 3R5Y A; 3ZOE A; 2ARZ A; 2ED4 A; 2OU5 A; 3K86 A; 1YOA A; 3B5M A; 3ZOD A; 2HTI A; 3FGE A; 4HMX A; 1RFE A; 1W3R A; 2D5M A; 2OL5 A; 1USC A; 1XHN A; 2FUR A; 3EAA A; 3IN6 A; 3VYA A; 5ESC A; 3SWJ A; 2NR4 A; 3AMF A; 2FG9 A; 1T9M A; 3VY2 A; 2QEA A; 2HHZ A; 3A6R A; 1W3O A; 3DMB A; 1Y12 A; 3HMZ A; 4YBN A; 4F07 A; 3BPK A; 3R5L A; 2HQ9 A; 3FKH A; 2IAB A; 1G79 A; 3EC6 A; 1NRG A; 2ASF A; 4HMV A; 1YLN A; 2GJG A; 3HY8 A; 2GUJ A; 4YWN A; 1G78 A; 3KYG A; 4HMU A; 5JAB A; #chains in the Genus database with same CATH homology 1I0S A; 4IRA A; 2RDE A; 3R5P A; 5BNC A; 2PTF A; 3CB0 A; 3PFT A; 3NFW A; 1WV4 A; 1I0R A; 2R6V A; 2X1J A; 1Y30 A; 4ZKY A; 3A6Q A; 1TY9 A; 1AXJ A; 2ECU A; 3U0I A; 3VY5 A; 2VPA A; 1RZ0 A; 3BA3 A; 2Q9K A; 2X1K A; 3GAS A; 1WLK A; 3DB0 A; 4L82 A; 3RH7 A; 2ECR A; 2FHQ A; 4HMS A; 4QVB A; 3U35 A; 2I02 A; 2D37 A; 4R82 A; 4XJ2 A; 2D36 A; 3U5W A; 3R5Z A; 3A20 A; 4HX6 A; 1G77 A; 1EJE A; 1WLI A; 3ZOG A; 3CP3 A; 3ZOC A; 3K87 A; 2I51 A; 1JNW A; 3BNK A; 1FLM A; 3AWH A; 3ZOF A; 1CI0 A; 2HQ7 A; 2AQ6 A; 2R0X A; 1XXO A; 1RZ1 A; 1W3Q A; 2RE7 A; 3R5R A; 1G76 A; 3ZOH A; 2HTD A; 4HMW A; 4Z85 A; 2E83 A; 4XHY A; 2A2J A; 5CHO A; 1VL7 A; 5CHE C; 3K88 A; 2QCK A; 1W9A A; 3DNH A; 3TGV A; 4Y9I A; 1USF A; 4HMT A; 2D38 A; 1W3P A; 3E4V A; 3H96 A; 1WGB A; 3F7E A; 3R5W A; 3U34 A; 3KYF A; 2IG6 A; 2IML A; 4N7R C; 1DNL A; 3R5Y A; 3ZOE A; 2ARZ A; 2ED4 A; 2OU5 A; 3K86 A; 1YOA A; 3B5M A; 3ZOD A; 2HTI A; 3FGE A; 4HMX A; 1RFE A; 1W3R A; 2D5M A; 2OL5 A; 1USC A; 1XHN A; 2FUR A; 3VYA A; 3IN6 A; 5ESC A; 3SWJ A; 2NR4 A; 3AMF A; 2FG9 A; 1T9M A; 3VY2 A; 2QEA A; 2HHZ A; 3A6R A; 1W3O A; 3DMB A; 3HMZ A; 4YBN A; 4F07 A; 3BPK A; 3R5L A; 2HQ9 A; 3FKH A; 2IAB A; 1G79 A; 3EC6 A; 1NRG A; 2ASF A; 4HMV A; 1YLN A; 2GJG A; 3HY8 A; 4YWN A; 1G78 A; 3KYG A; 4HMU A; 5JAB A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
