4XJ2A

Fera - nadh:fmn oxidoreductase from paracoccus denitrificans in complex with fmn
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
165
structure length
162
Chain Sequence
DEITFHPAARLLREALGRFATGVTVVTTAGPQGPLGMTVNSFSSVSLEPPLVLWCPARTSARHAAFAEAGAWSVHVLGSEQLETCLRFTRGGRQFEGLDTVLTPEGVPVIPGVAARFDCAAHAAHEAGDHSVLIGRVLRVTVAGPGDHPLVFAAGRFGQFEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Flavin reductase domain protein, FMN-binding protein
publication title Biochemical properties and crystal structure of the flavin reductase FerA from Paracoccus denitrificans.
pubmed doi rcsb
source organism Paracoccus denitrificans pd1222
total genus 30
structure length 162
sequence length 165
ec nomenclature
pdb deposition date 2015-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4xj2A00
1NRGA 2RDEA 2HTDA 1W3QA 3SWJA 3R5PA 1TY9A 3R5WA 3ZODA 3FGEA 2D5MA 2ASFA 1I0SA 1G78A 4HMXA 3R5RA 4HMSA 1WLIA 3U0IA 3BA3A 1XHNA 3B5MA 2VPAA 1JNWA 1USFA 2R6VA 3DMBA 2ECUA 3HMZA 3ZOHA 1RZ1A 1YOAA 5CHOA 5JABA 2IABA 3IN6A 3A6QA 2PTFA 3BPKA 2HHZA 4HX6A 4Y9IA 4IRAA 1G76A 3E4VA 3R5ZA 4Z85A 4F07A 1DNLA 4XHYA 3VYAA 2R0XA 1CI0A 3TGVA 4YWNA 2ECRA 3GASA 3RH7A 2NR4A 1W3RA 3R5LA 4HMWA 2OU5A 1W3OA 5BNCA 4R82A 1T9MA 5CHEC 1G79A 4HMVA 2GJGA 1FLMA 1WLKA 2ARZA 3VY2A 3K86A 2A2JA 2QCKA 3U35A 2I02A 1W3PA 3ZOGA 2IG6A 3ZOFA 4N7RC 1RZ0A 1WV4A 3DB0A 1Y30A 2D37A 1AXJA 3CP3A 3KYFA 2FHQA 1EJEA 1G77A 2QEAA 2X1KA 3K88A 3ZOCA 3KYGA 2RE7A 4HMTA 2AQ6A 3NFWA 2I51A 2OL5A 1I0RA 3CB0A 2Q9KA 4ZKYA 4L82A 3FKHA 3PFTA 3BNKA 3AMFA 4XJ2A 3R5YA 2HTIA 4YBNA 2ED4A 2HQ9A 2FURA 1USCA 1VL7A 3AWHA 3VY5A 2IMLA 2FG9A 3F7EA 2D38A 2X1JA 1YLNA 3H96A 5ESCA 2HQ7A 3HY8A 3U5WA 1RFEA 3K87A 3DNHA 4QVBA 4HMUA 3A20A 1WGBA 1XXOA 3ZOEA 3EC6A 3U34A 2D36A 2E83A 1W9AA 3A6RA
chains in the Genus database with same CATH superfamily
1NRGA 2RDEA 2HTDA 1W3QA 3SWJA 2GUJA 3R5PA 1TY9A 3R5WA 2K4QA 3ZODA 3FGEA 2D5MA 2ASFA 3HE1A 1I0SA 1G78A 4HMXA 3R5RA 4HMSA 1WLIA 3U0IA 3BA3A 1XHNA 3B5MA 2VPAA 1JNWA 1USFA 2R6VA 3DMBA 2ECUA 3HMZA 3ZOHA 1RZ1A 1YOAA 4HKHA 5CHOA 5JABA 2IABA 3IN6A 3A6QA 2PTFA 3BPKA 2HHZA 4HX6A 4Y9IA 4IRAA 1G76A 3E4VA 3R5ZA 4Z85A 4F07A 1DNLA 4XHYA 3VYAA 2R0XA 1CI0A 3TGVA 4YWNA 2ECRA 3GASA 3RH7A 2NR4A 1W3RA 3R5LA 4HMWA 2OU5A 1W3OA 5BNCA 4R82A 1T9MA 5CHEC 3V4HA 2L1TA 1G79A 4HMVA 2GJGA 1FLMA 1WLKA 2ARZA 3VY2A 3K86A 2A2JA 2QCKA 3U35A 2I02A 1W3PA 3ZOGA 2IG6A 3ZOFA 4N7RC 1RZ0A 1WV4A 3DB0A 4UHVA 1Y30A 2D37A 1AXJA 3CP3A 3KYFA 2FHQA 1EJEA 1G77A 2QEAA 2X1KA 3K88A 3ZOCA 3KYGA 2RE7A 4HMTA 3EAAA 2AQ6A 2P5ZX 3NFWA 2I51A 4TV4A 2OL5A 4MTKA 1I0RA 3CB0A 2Q9KA 4ZKYA 4L82A 3FKHA 3PFTA 3BNKA 3AMFA 4XJ2A 3R5YA 2HTIA 4YBNA 2ED4A 2HQ9A 2FURA 1USCA 1VL7A 3AWHA 1Y12A 2IMLA 3VY5A 2FG9A 3F7EA 2D38A 2X1JA 1YLNA 3H96A 5ESCA 2HQ7A 3HY8A 3U5WA 1RFEA 3K87A 3DNHA 4QVBA 4W64A 4HMUA 3A20A 1WGBA 1XXOA 3ZOEA 3EC6A 3U34A 2D36A 2E83A 1W9AA 3A6RA
chains in the Genus database with same CATH topology
1NRGA 2RDEA 2HTDA 1W3QA 3SWJA 3R5PA 1TY9A 3R5WA 3ZODA 3FGEA 2D5MA 2ASFA 1I0SA 1G78A 4HMXA 3R5RA 4HMSA 1WLIA 3U0IA 3BA3A 1XHNA 3B5MA 2VPAA 1JNWA 1USFA 2R6VA 3DMBA 2ECUA 3HMZA 3ZOHA 1RZ1A 1YOAA 5CHOA 5JABA 2IABA 3IN6A 3A6QA 2PTFA 3BPKA 2HHZA 4HX6A 4Y9IA 4IRAA 1G76A 3E4VA 3R5ZA 4Z85A 4F07A 1DNLA 4XHYA 3VYAA 2R0XA 1CI0A 3TGVA 4YWNA 2ECRA 3GASA 3RH7A 2NR4A 1W3RA 3R5LA 4HMWA 2OU5A 1W3OA 5BNCA 4R82A 1T9MA 5CHEC 1G79A 4HMVA 2GJGA 1FLMA 1WLKA 2ARZA 3VY2A 3K86A 2A2JA 2QCKA 3U35A 2I02A 1W3PA 3ZOGA 2IG6A 3ZOFA 4N7RC 1RZ0A 1WV4A 3DB0A 1Y30A 2D37A 1AXJA 3CP3A 3KYFA 2FHQA 1EJEA 1G77A 2QEAA 2X1KA 3K88A 3ZOCA 3KYGA 2RE7A 4HMTA 2AQ6A 3NFWA 2I51A 2OL5A 1I0RA 3CB0A 2Q9KA 4ZKYA 4L82A 3FKHA 3PFTA 3BNKA 3AMFA 4XJ2A 3R5YA 2HTIA 4YBNA 2ED4A 2HQ9A 2FURA 1USCA 1VL7A 3AWHA 3VY5A 2IMLA 2FG9A 3F7EA 2D38A 2X1JA 1YLNA 3H96A 5ESCA 2HQ7A 3HY8A 3U5WA 1RFEA 3K87A 3DNHA 4QVBA 4HMUA 3A20A 1WGBA 1XXOA 3ZOEA 3EC6A 3U34A 2D36A 2E83A 1W9AA 3A6RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NRG A;  2RDE A;  2HTD A;  1W3Q A;  3SWJ A;  3R5P A;  1TY9 A;  3R5W A;  3ZOD A;  3FGE A;  2D5M A;  2ASF A;  1I0S A;  1G78 A;  4HMX A;  3R5R A;  4HMS A;  1WLI A;  3U0I A;  3BA3 A;  1XHN A;  3B5M A;  2VPA A;  1JNW A;  1USF A;  2R6V A;  3DMB A;  2ECU A;  3HMZ A;  3ZOH A;  1RZ1 A;  1YOA A;  5CHO A;  5JAB A;  2IAB A;  3IN6 A;  3A6Q A;  2PTF A;  3BPK A;  2HHZ A;  4HX6 A;  4Y9I A;  4IRA A;  1G76 A;  3E4V A;  3R5Z A;  4Z85 A;  4F07 A;  1DNL A;  4XHY A;  3VYA A;  2R0X A;  1CI0 A;  3TGV A;  4YWN A;  2ECR A;  3GAS A;  3RH7 A;  2NR4 A;  1W3R A;  3R5L A;  4HMW A;  2OU5 A;  1W3O A;  5BNC A;  4R82 A;  1T9M A;  5CHE C;  1G79 A;  4HMV A;  2GJG A;  1FLM A;  1WLK A;  2ARZ A;  3VY2 A;  3K86 A;  2A2J A;  2QCK A;  3U35 A;  2I02 A;  1W3P A;  3ZOG A;  2IG6 A;  3ZOF A;  4N7R C;  1RZ0 A;  1WV4 A;  3DB0 A;  1Y30 A;  2D37 A;  1AXJ A;  3CP3 A;  3KYF A;  2FHQ A;  1EJE A;  1G77 A;  2QEA A;  2X1K A;  3K88 A;  3ZOC A;  3KYG A;  2RE7 A;  4HMT A;  2AQ6 A;  3NFW A;  2I51 A;  2OL5 A;  1I0R A;  3CB0 A;  2Q9K A;  4ZKY A;  4L82 A;  3FKH A;  3PFT A;  3BNK A;  3AMF A;  4XJ2 A;  3R5Y A;  2HTI A;  4YBN A;  2ED4 A;  2HQ9 A;  2FUR A;  1USC A;  1VL7 A;  3AWH A;  3VY5 A;  2IML A;  2FG9 A;  3F7E A;  2D38 A;  2X1J A;  1YLN A;  3H96 A;  5ESC A;  2HQ7 A;  3HY8 A;  3U5W A;  1RFE A;  3K87 A;  3DNH A;  4QVB A;  4HMU A;  3A20 A;  1WGB A;  1XXO A;  3ZOE A;  3EC6 A;  3U34 A;  2D36 A;  2E83 A;  1W9A A;  3A6R A; 
#chains in the Genus database with same CATH topology
 1NRG A;  2RDE A;  2HTD A;  1W3Q A;  3SWJ A;  2GUJ A;  3R5P A;  1TY9 A;  3R5W A;  2K4Q A;  3ZOD A;  3FGE A;  2D5M A;  2ASF A;  3HE1 A;  1I0S A;  1G78 A;  4HMX A;  3R5R A;  4HMS A;  1WLI A;  3U0I A;  3BA3 A;  1XHN A;  3B5M A;  2VPA A;  1JNW A;  1USF A;  2R6V A;  3DMB A;  2ECU A;  3HMZ A;  3ZOH A;  1RZ1 A;  1YOA A;  4HKH A;  5CHO A;  5JAB A;  2IAB A;  3IN6 A;  3A6Q A;  2PTF A;  3BPK A;  2HHZ A;  4HX6 A;  4Y9I A;  4IRA A;  1G76 A;  3E4V A;  3R5Z A;  4Z85 A;  4F07 A;  1DNL A;  4XHY A;  3VYA A;  2R0X A;  1CI0 A;  3TGV A;  4YWN A;  2ECR A;  3GAS A;  3RH7 A;  2NR4 A;  1W3R A;  3R5L A;  4HMW A;  2OU5 A;  1W3O A;  5BNC A;  4R82 A;  1T9M A;  5CHE C;  3V4H A;  2L1T A;  1G79 A;  4HMV A;  2GJG A;  1FLM A;  1WLK A;  2ARZ A;  3VY2 A;  3K86 A;  2A2J A;  2QCK A;  3U35 A;  2I02 A;  1W3P A;  3ZOG A;  2IG6 A;  3ZOF A;  4N7R C;  1RZ0 A;  1WV4 A;  3DB0 A;  4UHV A;  1Y30 A;  2D37 A;  1AXJ A;  3CP3 A;  3KYF A;  2FHQ A;  1EJE A;  1G77 A;  2QEA A;  2X1K A;  3K88 A;  3ZOC A;  3KYG A;  2RE7 A;  4HMT A;  3EAA A;  2AQ6 A;  2P5Z X;  3NFW A;  2I51 A;  4TV4 A;  2OL5 A;  4MTK A;  1I0R A;  3CB0 A;  2Q9K A;  4ZKY A;  4L82 A;  3FKH A;  3PFT A;  3BNK A;  3AMF A;  4XJ2 A;  3R5Y A;  2HTI A;  4YBN A;  2ED4 A;  2HQ9 A;  2FUR A;  1USC A;  1VL7 A;  3AWH A;  1Y12 A;  2IML A;  3VY5 A;  2FG9 A;  3F7E A;  2D38 A;  2X1J A;  1YLN A;  3H96 A;  5ESC A;  2HQ7 A;  3HY8 A;  3U5W A;  1RFE A;  3K87 A;  3DNH A;  4QVB A;  4W64 A;  4HMU A;  3A20 A;  1WGB A;  1XXO A;  3ZOE A;  3EC6 A;  3U34 A;  2D36 A;  2E83 A;  1W9A A;  3A6R A; 
#chains in the Genus database with same CATH homology
 1NRG A;  2RDE A;  2HTD A;  1W3Q A;  3SWJ A;  3R5P A;  1TY9 A;  3R5W A;  3ZOD A;  3FGE A;  2D5M A;  2ASF A;  1I0S A;  1G78 A;  4HMX A;  3R5R A;  4HMS A;  1WLI A;  3U0I A;  3BA3 A;  1XHN A;  3B5M A;  2VPA A;  1JNW A;  1USF A;  2R6V A;  3DMB A;  2ECU A;  3HMZ A;  3ZOH A;  1RZ1 A;  1YOA A;  5CHO A;  5JAB A;  2IAB A;  3IN6 A;  3A6Q A;  2PTF A;  3BPK A;  2HHZ A;  4HX6 A;  4Y9I A;  4IRA A;  1G76 A;  3E4V A;  3R5Z A;  4Z85 A;  4F07 A;  1DNL A;  4XHY A;  3VYA A;  2R0X A;  1CI0 A;  3TGV A;  4YWN A;  2ECR A;  3GAS A;  3RH7 A;  2NR4 A;  1W3R A;  3R5L A;  4HMW A;  2OU5 A;  1W3O A;  5BNC A;  4R82 A;  1T9M A;  5CHE C;  1G79 A;  4HMV A;  2GJG A;  1FLM A;  1WLK A;  2ARZ A;  3VY2 A;  3K86 A;  2A2J A;  2QCK A;  3U35 A;  2I02 A;  1W3P A;  3ZOG A;  2IG6 A;  3ZOF A;  4N7R C;  1RZ0 A;  1WV4 A;  3DB0 A;  1Y30 A;  2D37 A;  1AXJ A;  3CP3 A;  3KYF A;  2FHQ A;  1EJE A;  1G77 A;  2QEA A;  2X1K A;  3K88 A;  3ZOC A;  3KYG A;  2RE7 A;  4HMT A;  2AQ6 A;  3NFW A;  2I51 A;  2OL5 A;  1I0R A;  3CB0 A;  2Q9K A;  4ZKY A;  4L82 A;  3FKH A;  3PFT A;  3BNK A;  3AMF A;  4XJ2 A;  3R5Y A;  2HTI A;  4YBN A;  2ED4 A;  2HQ9 A;  2FUR A;  1USC A;  1VL7 A;  3AWH A;  3VY5 A;  2IML A;  2FG9 A;  3F7E A;  2D38 A;  2X1J A;  1YLN A;  3H96 A;  5ESC A;  2HQ7 A;  3HY8 A;  3U5W A;  1RFE A;  3K87 A;  3DNH A;  4QVB A;  4HMU A;  3A20 A;  1WGB A;  1XXO A;  3ZOE A;  3EC6 A;  3U34 A;  2D36 A;  2E83 A;  1W9A A;  3A6R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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