4XNIA

X-ray structure of peptst1
Total Genus 176
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
176
sequence length
473
structure length
447
Chain Sequence
GKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFALRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Di-or tripeptide:H+ symporter
publication title In meso in situ serial X-ray crystallography of soluble and membrane proteins.
pubmed doi rcsb
source organism Streptococcus thermophilus lmg 18311
total genus 176
structure length 447
sequence length 473
ec nomenclature
pdb deposition date 2015-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4xniA00
4IU8A 4IKYA 3O7QA 2Y5YA 4LDSA 4J05A 5D6KA 4YBQA 4YB9D 4PYPA 5A2NA 2CFPA 4D2CA 4IKXA 4TPJA 4IKVA 4QIQA 2CFQA 4IKWA 4JR9A 4TPHA 1PV6A 3O7PA 4XNJA 5C65A 4OAAA 4Q65A 4ZWCA 5A2OA 4JA3A 4ZWBA 5GXBA 4OH3A 5D59A 5D58A 2XUTA 4ZW9A 4JREA 4D2DA 4IU9A 5EQGA 4XNIA 4UVMA 5EQIA 4GC0A 4ZYRA 4U4TA 1PV7A 1PW4A 4LEPA 4D2BA 5EQHA 4GBZA 4IKZA 4TPGA 4GBYA 4U4VA 3WDOA 4U4WA 4APSA 4W6VA 2V8NA
chains in the Genus database with same CATH superfamily
3G6DA 5D6KA 1WU3I 4A3CD 1M4CA 3MZGA 3I4ND 5C65A 2B8XA 4NEJA 5C3ED 4JA3A 4ZWBA 1BCNA 5D59A 2ILKA 4UVMA 3HOXD 4YQXA 2O6IA 4YPGC 1RHGA 2D9QA 1GNCA 3H3VE 3O7QA 1I1RB 4A3DD 1BGEA 2O26A 1D9CA 2Z3RA 3HOZD 1IARA 3NCCA 3PO3D 1BGDA 1EERA 1PW4A 3DLQI 4RS1A 4A93D 4NEMA 4EXPA 2HYMB 1GA3A 1HUWA 2L3YA 2B5IA 3QB1A 1M4RA 4OH3A 1IL6A 3H0GD 4BY1D 1SCFA 1CN4C 3PIWA 2C35A 4YUEC 4J4LC 1M47A 3DI2A 2V8NA 4WRLB 3DUHC 2Y5YA 4ZS7A 5A2NA 5FHXA 5L6YC 4IKVA 1HWHA 2Q7NB 2KZ1A 1ALUA 2R93D 3TGXB 1PY2A 2E9WC 5GXBA 3HHCA 4I77Z 1EKUA 4LEPA 5LQBA 4NI9A 4GBYA 2B8YA 4IKYA 1D9GA 4YB9D 1WCMD 4NKQC 4NI7A 4BBSD 1ITIA 1BBNA 2CFQA 1B5LA 1RW5A 5A2OA 1LKIA 1EVSA 1HZIA 4XNIA 3WCYI 1LK3A 5D71A 4ZYRA 2B8UA 4GBZA 3PIVA 2L3OA 4W6VA 3FKID 1M49A 4O6KA 3OQ3A 3HOYD 3LB6A 3B5KA 1Y1VD 3SE3B 2D48A 2H24A 3EJJA 4BBRD 1F6FA 2B63D 3Q1SI 1BGCA 1A22A 5C7XA 4A3ED 2O27A 1FG9A 1YKBA 3DI3A 5D22A 4BY7D 1HIKA 3N06A 1ETEA 4DKFA 1FYHA 1Y14A 1EXZA 2JA5D 1CNT1 2Q14A 4A3ID 5FLMD 4A3FD 1ITFA 4A3KD 4ZW9A 3UF2A 3SE4B 1CSGA 4LRLA 1Y6ML 1QVNA 4X51A 4GRWA 4NN6A 5IP9D 4PS4A 3O7PA 4XNJA 2JA8D 3N0PA 1Y6NL 1PVHB 1NBPA 1Z7CA 4IU9A 5EQGA 5EQIA 3UX9A 2VUMD 1AXIA 2B8ZA 4A3LD 1F45B 3HOUD 2GMFA 4A3MD 4D2CA 1PV6A 3D87A 4OAAA 2PSMA 2JA7D 1Y6KL 2R92D 1ILKA 2XUTA 3EW3A 1BP3A 1PW6A 2B91A 4CNIC 1LQSL 5E4EA 4NN5A 2Q98A 4LDSA 1IRLA 1P9MB 5IP7D 5IYDD 2OQPA 4A3GD 1HIJA 4A3BD 4Q65A 5KNHI 2ERJD 2IL6A 3HMXB 4EXNA 3UEZE 4J05A 3BPOA 2B90A 2R7ZD 1HWGA 1N1FA 1J7VL 1Z92A 3UF5A 3IRHA 5D72A 1AX8A 3OG4A 1RFBA 5FUCA 3HHRA 1PGRA 1PV7A 1HGUA 5D70A 3D48P 3HOVD 3QB7A 3I4MD 1M4AA 1JLIA 3D85C 3AYHA 1A7MA 4DKCA 1AU1A 3L5XA 1IK0A 2Z3QA 5C44D 2LAGA 4FA8E 5EQHA 4TPGA 1KF9A 3NPZA 3L5WI 4YBQA 4PYPA 4DKEA 1M4BA 2CFPA 3OG6A 3HOWD 4ZWCA 3PO2D 3NCFA 4DOHA 5D58A 3VA2A 4JREA 4D2DA 3QWRB 5TS9A 4D2BA 4A3JD 3WDOA 1V7MV 4U4VA 4APSA 2CYKA 4IU8A 1Y1WD 3BESL 3S9DA 5C4XD 4IKXA 1RCBA 4IKWA 4O9HA 4NN7A 2JA6D 1ITLA 4U4TA 4ZF7A 1VLKA 1INRA 4QIQA 4JR9A 3INKC 2LMSA 2XQBA 3BPLA 4GC0A 4DKDA 3QT2C 3G9VB 4U4WA 4YDYI 1V7NV 5D28B 1CD9A 4MHLA 3NCEA 3QAZA 1HULA 4TPJA 5IYBD 1ITMA 4TPHA 1CYLA 4GS7A 2INTA 1EMRA 5IYCD 3LB6B 1IJZA 3NCBA 4Z5RD 1BUYA 4BXXD 1M48A 3DGCL 4IKZA 3BPNA
chains in the Genus database with same CATH topology
4IU8A 4IKYA 3O7QA 2Y5YA 4LDSA 4J05A 5D6KA 4YBQA 4YB9D 4PYPA 5A2NA 2CFPA 4D2CA 4IKXA 4TPJA 4IKVA 4QIQA 2CFQA 4IKWA 4JR9A 4TPHA 1PV6A 3O7PA 4XNJA 5C65A 4OAAA 4Q65A 4ZWCA 5A2OA 4JA3A 4ZWBA 5GXBA 4OH3A 5D59A 5D58A 2XUTA 4ZW9A 4JREA 4D2DA 4IU9A 5EQGA 4XNIA 4UVMA 5EQIA 4GC0A 4ZYRA 4U4TA 1PV7A 1PW4A 4LEPA 4D2BA 5EQHA 4GBZA 4IKZA 4TPGA 4GBYA 4U4VA 3WDOA 4U4WA 4APSA 4W6VA 2V8NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IU8 A;  4IKY A;  3O7Q A;  2Y5Y A;  4LDS A;  4J05 A;  5D6K A;  4YBQ A;  4YB9 D;  4PYP A;  5A2N A;  2CFP A;  4D2C A;  4IKX A;  4TPJ A;  4IKV A;  4QIQ A;  2CFQ A;  4IKW A;  4JR9 A;  4TPH A;  1PV6 A;  3O7P A;  4XNJ A;  5C65 A;  4OAA A;  4Q65 A;  4ZWC A;  5A2O A;  4JA3 A;  4ZWB A;  5GXB A;  4OH3 A;  5D59 A;  5D58 A;  2XUT A;  4ZW9 A;  4JRE A;  4D2D A;  4IU9 A;  5EQG A;  4XNI A;  4UVM A;  5EQI A;  4GC0 A;  4ZYR A;  4U4T A;  1PV7 A;  1PW4 A;  4LEP A;  4D2B A;  5EQH A;  4GBZ A;  4IKZ A;  4TPG A;  4GBY A;  4U4V A;  3WDO A;  4U4W A;  4APS A;  4W6V A;  2V8N A; 
#chains in the Genus database with same CATH topology
 3G6D A;  5D6K A;  1WU3 I;  4A3C D;  1M4C A;  3MZG A;  3I4N D;  5C65 A;  2B8X A;  4NEJ A;  5C3E D;  4JA3 A;  4ZWB A;  1BCN A;  5D59 A;  2ILK A;  4UVM A;  3HOX D;  4YQX A;  2O6I A;  4YPG C;  1RHG A;  2D9Q A;  1GNC A;  3H3V E;  3O7Q A;  1I1R B;  4A3D D;  1BGE A;  2O26 A;  1D9C A;  2Z3R A;  3HOZ D;  1IAR A;  3NCC A;  3PO3 D;  1BGD A;  1EER A;  1PW4 A;  3DLQ I;  4RS1 A;  4A93 D;  4NEM A;  4EXP A;  2HYM B;  1GA3 A;  1HUW A;  2L3Y A;  2B5I A;  3QB1 A;  1M4R A;  4OH3 A;  1IL6 A;  3H0G D;  4BY1 D;  1SCF A;  1CN4 C;  3PIW A;  2C35 A;  4YUE C;  4J4L C;  1M47 A;  3DI2 A;  2V8N A;  4WRL B;  3DUH C;  2Y5Y A;  4ZS7 A;  5A2N A;  5FHX A;  5L6Y C;  4IKV A;  1HWH A;  2Q7N B;  2KZ1 A;  1ALU A;  2R93 D;  3TGX B;  1PY2 A;  2E9W C;  5GXB A;  3HHC A;  4I77 Z;  1EKU A;  4LEP A;  5LQB A;  4NI9 A;  4GBY A;  2B8Y A;  4IKY A;  1D9G A;  4YB9 D;  1WCM D;  4NKQ C;  4NI7 A;  4BBS D;  1ITI A;  1BBN A;  2CFQ A;  1B5L A;  1RW5 A;  5A2O A;  1LKI A;  1EVS A;  1HZI A;  4XNI A;  3WCY I;  1LK3 A;  5D71 A;  4ZYR A;  2B8U A;  4GBZ A;  3PIV A;  2L3O A;  4W6V A;  3FKI D;  1M49 A;  4O6K A;  3OQ3 A;  3HOY D;  3LB6 A;  3B5K A;  1Y1V D;  3SE3 B;  2D48 A;  2H24 A;  3EJJ A;  4BBR D;  1F6F A;  2B63 D;  3Q1S I;  1BGC A;  1A22 A;  5C7X A;  4A3E D;  2O27 A;  1FG9 A;  1YKB A;  3DI3 A;  5D22 A;  4BY7 D;  1HIK A;  3N06 A;  1ETE A;  4DKF A;  1FYH A;  1Y14 A;  1EXZ A;  2JA5 D;  1CNT 1;  2Q14 A;  4A3I D;  5FLM D;  4A3F D;  1ITF A;  4A3K D;  4ZW9 A;  3UF2 A;  3SE4 B;  1CSG A;  4LRL A;  1Y6M L;  1QVN A;  4X51 A;  4GRW A;  4NN6 A;  5IP9 D;  4PS4 A;  3O7P A;  4XNJ A;  2JA8 D;  3N0P A;  1Y6N L;  1PVH B;  1NBP A;  1Z7C A;  4IU9 A;  5EQG A;  5EQI A;  3UX9 A;  2VUM D;  1AXI A;  2B8Z A;  4A3L D;  1F45 B;  3HOU D;  2GMF A;  4A3M D;  4D2C A;  1PV6 A;  3D87 A;  4OAA A;  2PSM A;  2JA7 D;  1Y6K L;  2R92 D;  1ILK A;  2XUT A;  3EW3 A;  1BP3 A;  1PW6 A;  2B91 A;  4CNI C;  1LQS L;  5E4E A;  4NN5 A;  2Q98 A;  4LDS A;  1IRL A;  1P9M B;  5IP7 D;  5IYD D;  2OQP A;  4A3G D;  1HIJ A;  4A3B D;  4Q65 A;  5KNH I;  2ERJ D;  2IL6 A;  3HMX B;  4EXN A;  3UEZ E;  4J05 A;  3BPO A;  2B90 A;  2R7Z D;  1HWG A;  1N1F A;  1J7V L;  1Z92 A;  3UF5 A;  3IRH A;  5D72 A;  1AX8 A;  3OG4 A;  1RFB A;  5FUC A;  3HHR A;  1PGR A;  1PV7 A;  1HGU A;  5D70 A;  3D48 P;  3HOV D;  3QB7 A;  3I4M D;  1M4A A;  1JLI A;  3D85 C;  3AYH A;  1A7M A;  4DKC A;  1AU1 A;  3L5X A;  1IK0 A;  2Z3Q A;  5C44 D;  2LAG A;  4FA8 E;  5EQH A;  4TPG A;  1KF9 A;  3NPZ A;  3L5W I;  4YBQ A;  4PYP A;  4DKE A;  1M4B A;  2CFP A;  3OG6 A;  3HOW D;  4ZWC A;  3PO2 D;  3NCF A;  4DOH A;  5D58 A;  3VA2 A;  4JRE A;  4D2D A;  3QWR B;  5TS9 A;  4D2B A;  4A3J D;  3WDO A;  1V7M V;  4U4V A;  4APS A;  2CYK A;  4IU8 A;  1Y1W D;  3BES L;  3S9D A;  5C4X D;  4IKX A;  1RCB A;  4IKW A;  4O9H A;  4NN7 A;  2JA6 D;  1ITL A;  4U4T A;  4ZF7 A;  1VLK A;  1INR A;  4QIQ A;  4JR9 A;  3INK C;  2LMS A;  2XQB A;  3BPL A;  4GC0 A;  4DKD A;  3QT2 C;  3G9V B;  4U4W A;  4YDY I;  1V7N V;  5D28 B;  1CD9 A;  4MHL A;  3NCE A;  3QAZ A;  1HUL A;  4TPJ A;  5IYB D;  1ITM A;  4TPH A;  1CYL A;  4GS7 A;  2INT A;  1EMR A;  5IYC D;  3LB6 B;  1IJZ A;  3NCB A;  4Z5R D;  1BUY A;  4BXX D;  1M48 A;  3DGC L;  4IKZ A;  3BPN A; 
#chains in the Genus database with same CATH homology
 4IU8 A;  4IKY A;  3O7Q A;  2Y5Y A;  4LDS A;  4J05 A;  5D6K A;  4YBQ A;  4YB9 D;  4PYP A;  5A2N A;  2CFP A;  4D2C A;  4IKX A;  4TPJ A;  4IKV A;  4QIQ A;  2CFQ A;  4IKW A;  4JR9 A;  4TPH A;  1PV6 A;  3O7P A;  4XNJ A;  5C65 A;  4OAA A;  4Q65 A;  4ZWC A;  5A2O A;  4JA3 A;  4ZWB A;  5GXB A;  4OH3 A;  5D59 A;  5D58 A;  2XUT A;  4ZW9 A;  4JRE A;  4D2D A;  4IU9 A;  5EQG A;  4XNI A;  4UVM A;  5EQI A;  4GC0 A;  4ZYR A;  4U4T A;  1PV7 A;  1PW4 A;  4LEP A;  4D2B A;  5EQH A;  4GBZ A;  4IKZ A;  4TPG A;  4GBY A;  4U4V A;  3WDO A;  4U4W A;  4APS A;  4W6V A;  2V8N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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