4XNJA

X-ray structure of peptst2
Total Genus 192
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
474
structure length
466
Chain Sequence
b'GKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Di-or tripeptide:H+ symporter
publication title In meso in situ serial X-ray crystallography of soluble and membrane proteins.
pubmed doi rcsb
source organism Streptococcus thermophilus lmg 18311
molecule tags Transport protein
total genus 192
structure length 466
sequence length 474
ec nomenclature
pdb deposition date 2015-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4xnjA00
4D2BA 4LEPA 5EQHA 5D6KA 2CFPA 4OAAA 4TPGA 5A2OA 5C65A 4U4TA 5D59A 4IKWA 4JA3A 2XUTA 4IKZA 4U4WA 4U4VA 5EQIA 4APSA 4UVMA 4IKYA 4YB9D 4D2CA 5D58A 4PYPA 4ZW9A 4YBQA 4W6VA 4IKVA 4ZYRA 5GXBA 4J05A 1PV6A 4GBYA 4GBZA 4IU9A 4OH3A 4JREA 4IU8A 4D2DA 2V8NA 4JR9A 4Q65A 4ZWBA 4TPJA 4ZWCA 4TPHA 2Y5YA 3O7PA 5A2NA 1PV7A 4IKXA 4XNIA 2CFQA 1PW4A 3O7QA 4LDSA 3WDOA 4QIQA 4GC0A 5EQGA 4XNJA
chains in the Genus database with same CATH superfamily
4BBSD 2GMFA 4JA3A 5EQIA 3QB1A 4YB9D 2Z3RA 3SE4B 4J05A 4NN6A 1FYHA 1BUYA 1Y1VD 3BESL 3N0PA 3Q1SI 4IU9A 3UX9A 5IYCD 2R93D 3HOZD 1I1RB 4J4LC 4BY7D 2VUMD 1Z92A 2B63D 5D28B 3OG6A 4LEPA 3H0GD 1EKUA 1ITLA 1Y6KL 5D71A 4ZYRA 4BBRD 4A3JD 1PVHB 4EXPA 5A2OA 2L3YA 4NN7A 1D9GA 4U4WA 3HOWD 2O27A 1ALUA 4NN5A 1BCNA 1IJZA 4ZWBA 1GNCA 1M4AA 2INTA 2LAGA 1HWHA 2CYKA 3O7QA 1BP3A 5C65A 3HOUD 3TGXB 1BGCA 1HUWA 3DUHC 4A3MD 1BGEA 4YUEC 4BY1D 2HYMB 3FKID 3EJJA 4RS1A 4YPGC 5EQGA 4XNJA 3BPNA 5E4EA 5FUCA 1HWGA 2Q98A 4I77Z 4W6VA 4O6KA 1HIKA 3INKC 5TS9A 2B8ZA 1RW5A 5A2NA 5LQBA 1Y6NL 1LQSL 5IYBD 1Z7CA 3QB7A 4WRLB 2JA6D 3S9DA 4UVMA 3D87A 4IKYA 3NCCA 1N1FA 1ETEA 1P9MB 1GA3A 4GBYA 4DKEA 1ILKA 1NBPA 2XQBA 3N06A 4A3CD 1M48A 1PY2A 4TPJA 2R92D 3G6DA 1ITMA 2OQPA 4X51A 5KNHI 1RCBA 5EQHA 2JA7D 4U4TA 1EERA 1WU3I 3QT2C 4CNIC 2D9QA 1HZIA 4D2CA 3MZGA 1Y1WD 4JREA 5L6YC 2PSMA 3O7PA 4IKXA 1EMRA 1HIJA 2O26A 1ITFA 1CYLA 1SCFA 1JLIA 2XUTA 2KZ1A 1AXIA 1HGUA 1QVNA 4A3BD 4NI9A 1AX8A 5C3ED 4ZF7A 4DKFA 1PW4A 3OG4A 3L5XA 4A3DD 3UF2A 3DLQI 4IKZA 4A3LD 4DKCA 1IL6A 1F45B 4PYPA 4ZW9A 2B91A 4BXXD 3WCYI 1BBNA 5GXBA 1AU1A 1IK0A 4Z5RD 4FA8E 1RHGA 1RFBA 3PO3D 1M47A 5D6KA 5FLMD 4DKDA 2B8UA 1IRLA 1LK3A 1CSGA 1D9CA 1CNT1 3AYHA 4IKVA 3I4MD 3NCFA 2E9WC 2B90A 2V8NA 4ZWCA 1M49A 5IP9D 1PV7A 5D72A 1PW6A 4MHLA 3DI2A 4OAAA 3UEZE 4ZS7A 4APSA 3LB6B 4A3FD 4GBZA 3UF5A 5IYDD 1KF9A 4TPHA 1Y6ML 2Q14A 5D70A 5D22A 2ERJD 4TPGA 1V7MV 3HOYD 1EXZA 5IP7D 1LKIA 1CD9A 4NI7A 1F6FA 3L5WI 4YBQA 2B8YA 1BGDA 4A3ID 3PO2D 3HHRA 4A3ED 1PV6A 2H24A 2IL6A 2JA8D 4GS7A 5C7XA 1INRA 3NPZA 3HHCA 1WCMD 4A3GD 3H3VE 2LMSA 3HOXD 1FG9A 4U4VA 2O6IA 4O9HA 2B5IA 3G9VB 4IU8A 3SE3B 4Q65A 3D85C 4XNIA 3BPLA 4YDYI 3WDOA 4QIQA 4D2BA 3VA2A 2CFPA 3NCBA 2B8XA 1J7VL 2L3OA 3IRHA 3NCEA 1EVSA 4OH3A 3PIVA 1YKBA 3EW3A 2ILKA 1M4BA 2Y5YA 1B5LA 4NEMA 1IARA 4YQXA 2Q7NB 1HULA 1PGRA 3BPOA 4GC0A 1Y14A 4NEJA 2D48A 2Z3QA 4GRWA 5C4XD 1VLKA 4PS4A 5D58A 3D48P 3B5KA 1ITIA 4A3KD 3QWRB 4LRLA 3DI3A 1A22A 3I4ND 4A93D 4DOHA 1CN4C 4JR9A 3OQ3A 4EXNA 1M4RA 4NKQC 2R7ZD 3DGCL 4LDSA 3LB6A 3QAZA 3HOVD 5D59A 3PIWA 5FHXA 1V7NV 2JA5D 4IKWA 2C35A 5C44D 4D2DA 1M4CA 2CFQA 3HMXB 1A7MA
chains in the Genus database with same CATH topology
4D2BA 4LEPA 5EQHA 5D6KA 2CFPA 4OAAA 4TPGA 5A2OA 5C65A 4U4TA 5D59A 4IKWA 4JA3A 2XUTA 4IKZA 4U4WA 4U4VA 5EQIA 4APSA 4UVMA 4IKYA 4YB9D 4D2CA 5D58A 4PYPA 4ZW9A 4YBQA 4W6VA 4IKVA 4ZYRA 5GXBA 4J05A 1PV6A 4GBYA 4GBZA 4IU9A 4OH3A 4JREA 4IU8A 4D2DA 2V8NA 4JR9A 4Q65A 4ZWBA 4TPJA 4ZWCA 4TPHA 2Y5YA 3O7PA 5A2NA 1PV7A 4IKXA 4XNIA 2CFQA 1PW4A 3O7QA 4LDSA 3WDOA 4QIQA 4GC0A 5EQGA 4XNJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D2B A;  4LEP A;  5EQH A;  5D6K A;  2CFP A;  4OAA A;  4TPG A;  5A2O A;  5C65 A;  4U4T A;  5D59 A;  4IKW A;  4JA3 A;  2XUT A;  4IKZ A;  4U4W A;  4U4V A;  5EQI A;  4APS A;  4UVM A;  4IKY A;  4YB9 D;  4D2C A;  5D58 A;  4PYP A;  4ZW9 A;  4YBQ A;  4W6V A;  4IKV A;  4ZYR A;  5GXB A;  4J05 A;  1PV6 A;  4GBY A;  4GBZ A;  4IU9 A;  4OH3 A;  4JRE A;  4IU8 A;  4D2D A;  2V8N A;  4JR9 A;  4Q65 A;  4ZWB A;  4TPJ A;  4ZWC A;  4TPH A;  2Y5Y A;  3O7P A;  5A2N A;  1PV7 A;  4IKX A;  4XNI A;  2CFQ A;  1PW4 A;  3O7Q A;  4LDS A;  3WDO A;  4QIQ A;  4GC0 A;  5EQG A;  4XNJ A; 
#chains in the Genus database with same CATH topology
 4BBS D;  2GMF A;  4JA3 A;  5EQI A;  3QB1 A;  4YB9 D;  2Z3R A;  3SE4 B;  4J05 A;  4NN6 A;  1FYH A;  1BUY A;  1Y1V D;  3BES L;  3N0P A;  3Q1S I;  4IU9 A;  3UX9 A;  5IYC D;  2R93 D;  3HOZ D;  1I1R B;  4J4L C;  4BY7 D;  2VUM D;  1Z92 A;  2B63 D;  5D28 B;  3OG6 A;  4LEP A;  3H0G D;  1EKU A;  1ITL A;  1Y6K L;  5D71 A;  4ZYR A;  4BBR D;  4A3J D;  1PVH B;  4EXP A;  5A2O A;  2L3Y A;  4NN7 A;  1D9G A;  4U4W A;  3HOW D;  2O27 A;  1ALU A;  4NN5 A;  1BCN A;  1IJZ A;  4ZWB A;  1GNC A;  1M4A A;  2INT A;  2LAG A;  1HWH A;  2CYK A;  3O7Q A;  1BP3 A;  5C65 A;  3HOU D;  3TGX B;  1BGC A;  1HUW A;  3DUH C;  4A3M D;  1BGE A;  4YUE C;  4BY1 D;  2HYM B;  3FKI D;  3EJJ A;  4RS1 A;  4YPG C;  5EQG A;  4XNJ A;  3BPN A;  5E4E A;  5FUC A;  1HWG A;  2Q98 A;  4I77 Z;  4W6V A;  4O6K A;  1HIK A;  3INK C;  5TS9 A;  2B8Z A;  1RW5 A;  5A2N A;  5LQB A;  1Y6N L;  1LQS L;  5IYB D;  1Z7C A;  3QB7 A;  4WRL B;  2JA6 D;  3S9D A;  4UVM A;  3D87 A;  4IKY A;  3NCC A;  1N1F A;  1ETE A;  1P9M B;  1GA3 A;  4GBY A;  4DKE A;  1ILK A;  1NBP A;  2XQB A;  3N06 A;  4A3C D;  1M48 A;  1PY2 A;  4TPJ A;  2R92 D;  3G6D A;  1ITM A;  2OQP A;  4X51 A;  5KNH I;  1RCB A;  5EQH A;  2JA7 D;  4U4T A;  1EER A;  1WU3 I;  3QT2 C;  4CNI C;  2D9Q A;  1HZI A;  4D2C A;  3MZG A;  1Y1W D;  4JRE A;  5L6Y C;  2PSM A;  3O7P A;  4IKX A;  1EMR A;  1HIJ A;  2O26 A;  1ITF A;  1CYL A;  1SCF A;  1JLI A;  2XUT A;  2KZ1 A;  1AXI A;  1HGU A;  1QVN A;  4A3B D;  4NI9 A;  1AX8 A;  5C3E D;  4ZF7 A;  4DKF A;  1PW4 A;  3OG4 A;  3L5X A;  4A3D D;  3UF2 A;  3DLQ I;  4IKZ A;  4A3L D;  4DKC A;  1IL6 A;  1F45 B;  4PYP A;  4ZW9 A;  2B91 A;  4BXX D;  3WCY I;  1BBN A;  5GXB A;  1AU1 A;  1IK0 A;  4Z5R D;  4FA8 E;  1RHG A;  1RFB A;  3PO3 D;  1M47 A;  5D6K A;  5FLM D;  4DKD A;  2B8U A;  1IRL A;  1LK3 A;  1CSG A;  1D9C A;  1CNT 1;  3AYH A;  4IKV A;  3I4M D;  3NCF A;  2E9W C;  2B90 A;  2V8N A;  4ZWC A;  1M49 A;  5IP9 D;  1PV7 A;  5D72 A;  1PW6 A;  4MHL A;  3DI2 A;  4OAA A;  3UEZ E;  4ZS7 A;  4APS A;  3LB6 B;  4A3F D;  4GBZ A;  3UF5 A;  5IYD D;  1KF9 A;  4TPH A;  1Y6M L;  2Q14 A;  5D70 A;  5D22 A;  2ERJ D;  4TPG A;  1V7M V;  3HOY D;  1EXZ A;  5IP7 D;  1LKI A;  1CD9 A;  4NI7 A;  1F6F A;  3L5W I;  4YBQ A;  2B8Y A;  1BGD A;  4A3I D;  3PO2 D;  3HHR A;  4A3E D;  1PV6 A;  2H24 A;  2IL6 A;  2JA8 D;  4GS7 A;  5C7X A;  1INR A;  3NPZ A;  3HHC A;  1WCM D;  4A3G D;  3H3V E;  2LMS A;  3HOX D;  1FG9 A;  4U4V A;  2O6I A;  4O9H A;  2B5I A;  3G9V B;  4IU8 A;  3SE3 B;  4Q65 A;  3D85 C;  4XNI A;  3BPL A;  4YDY I;  3WDO A;  4QIQ A;  4D2B A;  3VA2 A;  2CFP A;  3NCB A;  2B8X A;  1J7V L;  2L3O A;  3IRH A;  3NCE A;  1EVS A;  4OH3 A;  3PIV A;  1YKB A;  3EW3 A;  2ILK A;  1M4B A;  2Y5Y A;  1B5L A;  4NEM A;  1IAR A;  4YQX A;  2Q7N B;  1HUL A;  1PGR A;  3BPO A;  4GC0 A;  1Y14 A;  4NEJ A;  2D48 A;  2Z3Q A;  4GRW A;  5C4X D;  1VLK A;  4PS4 A;  5D58 A;  3D48 P;  3B5K A;  1ITI A;  4A3K D;  3QWR B;  4LRL A;  3DI3 A;  1A22 A;  3I4N D;  4A93 D;  4DOH A;  1CN4 C;  4JR9 A;  3OQ3 A;  4EXN A;  1M4R A;  4NKQ C;  2R7Z D;  3DGC L;  4LDS A;  3LB6 A;  3QAZ A;  3HOV D;  5D59 A;  3PIW A;  5FHX A;  1V7N V;  2JA5 D;  4IKW A;  2C35 A;  5C44 D;  4D2D A;  1M4C A;  2CFQ A;  3HMX B;  1A7M A; 
#chains in the Genus database with same CATH homology
 4D2B A;  4LEP A;  5EQH A;  5D6K A;  2CFP A;  4OAA A;  4TPG A;  5A2O A;  5C65 A;  4U4T A;  5D59 A;  4IKW A;  4JA3 A;  2XUT A;  4IKZ A;  4U4W A;  4U4V A;  5EQI A;  4APS A;  4UVM A;  4IKY A;  4YB9 D;  4D2C A;  5D58 A;  4PYP A;  4ZW9 A;  4YBQ A;  4W6V A;  4IKV A;  4ZYR A;  5GXB A;  4J05 A;  1PV6 A;  4GBY A;  4GBZ A;  4IU9 A;  4OH3 A;  4JRE A;  4IU8 A;  4D2D A;  2V8N A;  4JR9 A;  4Q65 A;  4ZWB A;  4TPJ A;  4ZWC A;  4TPH A;  2Y5Y A;  3O7P A;  5A2N A;  1PV7 A;  4IKX A;  4XNI A;  2CFQ A;  1PW4 A;  3O7Q A;  4LDS A;  3WDO A;  4QIQ A;  4GC0 A;  5EQG A;  4XNJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...