4XNJA

X-ray structure of peptst2
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
474
structure length
466
Chain Sequence
GKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title In meso in situ serial X-ray crystallography of soluble and membrane proteins.
pubmed doi rcsb
molecule keywords Di-or tripeptide:H+ symporter
molecule tags Transport protein
source organism Streptococcus thermophilus lmg 18311
total genus 192
structure length 466
sequence length 474
ec nomenclature
pdb deposition date 2015-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4xnjA00
4TPGA 4APSA 4YBQA 4IU8A 2CFQA 5EQGA 2XUTA 2CFPA 5D6KA 4IKYA 4TPHA 4XNIA 4QIQA 5A2OA 4U4VA 3WDOA 4ZYRA 2Y5YA 4UVMA 4D2DA 4JREA 5GXBA 1PV6A 4YB9D 3O7QA 4OH3A 4ZWBA 4IKXA 5D58A 4GBYA 4IKVA 4IU9A 4PYPA 4D2CA 4IKZA 4OAAA 2V8NA 4TPJA 5C65A 5D59A 4ZW9A 5EQIA 4LEPA 5EQHA 3O7PA 4LDSA 1PV7A 4GBZA 4U4WA 4JR9A 4ZWCA 4D2BA 1PW4A 4W6VA 4XNJA 5A2NA 4U4TA 4GC0A 4IKWA 4Q65A 4JA3A 4J05A
chains in the Genus database with same CATH superfamily
1Z7CA 4WRLB 1BBNA 4NI7A 4U4VA 4ZF7A 4A3JD 3DLQI 4A3LD 3AYHA 3WCYI 2JA8D 5FHXA 1ITLA 1D9GA 4GBYA 1WCMD 2L3YA 1FYHA 3QAZA 1AXIA 3Q1SI 4NEMA 3UF2A 3OQ3A 1IARA 1BGDA 4D2DA 5C3ED 3TGXB 3BPOA 1WU3I 4ZWCA 4W6VA 2B8UA 4YQXA 1CD9A 3NCEA 4CNIC 5EQGA 1HULA 2INTA 4GS7A 5D70A 4XNIA 1EMRA 4BY7D 1BP3A 4OH3A 5D72A 4IKVA 1HUWA 3O7PA 1KF9A 1PV7A 3EW3A 1BUYA 1F45B 1SCFA 3H0GD 1IK0A 2B8XA 4DKFA 1RW5A 3PO2D 4YUEC 1PGRA 1F6FA 1EKUA 3OG6A 4BBSD 4NN7A 1LKIA 4PYPA 1Y6NL 1V7NV 1M49A 4Q65A 5TS9A 1M47A 2E9WC 1CN4C 3HOWD 1RHGA 4IU8A 4NEJA 1JLIA 1HWHA 1M4CA 4O6KA 4BBRD 3O7QA 4DKEA 2Q98A 4TPJA 4A3DD 4LRLA 1Z92A 2LMSA 5A2NA 1PW6A 5L6YC 3G9VB 2O27A 2B8YA 5FLMD 2VUMD 1CNT1 2LAGA 3HOVD 2ILKA 1EVSA 3HOZD 4YB9D 3HOXD 4D2CA 1ETEA 2XQBA 5C4XD 1YKBA 3PO3D 3NCCA 2CFQA 3I4MD 3SE3B 1PY2A 4QIQA 1NBPA 4GRWA 1HZIA 4Z5RD 4DOHA 4NN6A 5D58A 3HHCA 2H24A 1BCNA 2ERJD 5C44D 4LDSA 1AU1A 2D48A 3H3VE 3NCFA 3DI3A 4DKCA 1IL6A 4O9HA 3PIWA 2JA7D 2Z3RA 4BXXD 2Y5YA 4A3ED 2KZ1A 4ZWBA 5C7XA 3HHRA 4IKZA 1ITMA 2B63D 4A3ID 2Q14A 5KNHI 4U4TA 4GC0A 1P9MB 4ZS7A 3UEZE 5IYCD 1A7MA 3BPLA 4IKYA 1J7VL 1VLKA 1GNCA 1RFBA 3DGCL 1CSGA 2CYKA 1A22A 1M48A 2Z3QA 4IKXA 5D22A 2V8NA 2Q7NB 4XNJA 3D85C 3G6DA 3QB7A 1BGCA 3DUHC 5D6KA 4A3KD 5IYBD 4A3BD 2R93D 4UVMA 1Y6ML 1ITIA 5IP7D 3MZGA 2OQPA 1FG9A 4OAAA 5D59A 1N1FA 1HGUA 1CYLA 1HWGA 1Y1VD 2JA6D 4YDYI 2D9QA 2B90A 5A2OA 1RCBA 5LQBA 1EERA 1PV6A 3QB1A 4IU9A 1EXZA 4A93D 5EQHA 3UF5A 1ALUA 3NCBA 2B5IA 5FUCA 1PVHB 1INRA 4NKQC 3BPNA 3L5WI 2PSMA 3HOUD 3QT2C 1ILKA 4DKDA 4A3FD 4A3CD 2B91A 3HMXB 2IL6A 2B8ZA 2XUTA 4I77Z 4TPHA 3D87A 2JA5D 3LB6A 1ITFA 2O6IA 1M4AA 1LK3A 1BGEA 1HIJA 3SE4B 5EQIA 3QWRB 2L3OA 1PW4A 4MHLA 5C65A 5IP9D 4YBQA 5IYDD 3VA2A 2CFPA 3IRHA 4EXPA 3S9DA 3N06A 1I1RB 4JREA 5GXBA 3I4ND 3NPZA 1Y6KL 4A3GD 3EJJA 1Y14A 4ZW9A 1M4BA 3OG4A 3FKID 4D2BA 1V7MV 4A3MD 1Y1WD 3UX9A 4J4LC 1GA3A 4BY1D 1LQSL 4X51A 5D28B 1IRLA 3N0PA 3WDOA 3INKC 3B5KA 2R92D 2C35A 4GBZA 3D48P 1M4RA 3PIVA 1B5LA 4TPGA 4APSA 3BESL 2GMFA 1HIKA 4PS4A 4FA8E 4ZYRA 2R7ZD 4EXNA 3DI2A 4YPGC 4NI9A 2HYMB 4RS1A 5E4EA 1D9CA 1QVNA 4NN5A 4LEPA 3LB6B 3HOYD 1IJZA 2O26A 4U4WA 4JR9A 5D71A 1AX8A 3L5XA 4IKWA 4JA3A 4J05A
chains in the Genus database with same CATH topology
4TPGA 4APSA 4YBQA 4IU8A 2CFQA 5EQGA 2XUTA 2CFPA 5D6KA 4IKYA 4TPHA 4XNIA 4QIQA 5A2OA 4U4VA 3WDOA 4ZYRA 2Y5YA 4UVMA 4D2DA 4JREA 5GXBA 1PV6A 4YB9D 3O7QA 4OH3A 4ZWBA 4IKXA 5D58A 4GBYA 4IKVA 4IU9A 4PYPA 4D2CA 4IKZA 4OAAA 2V8NA 4TPJA 5C65A 5D59A 4ZW9A 5EQIA 4LEPA 5EQHA 3O7PA 4LDSA 1PV7A 4GBZA 4U4WA 4JR9A 4ZWCA 4D2BA 1PW4A 4W6VA 4XNJA 5A2NA 4U4TA 4GC0A 4IKWA 4Q65A 4JA3A 4J05A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TPG A;  4APS A;  4YBQ A;  4IU8 A;  2CFQ A;  5EQG A;  2XUT A;  2CFP A;  5D6K A;  4IKY A;  4TPH A;  4XNI A;  4QIQ A;  5A2O A;  4U4V A;  3WDO A;  4ZYR A;  2Y5Y A;  4UVM A;  4D2D A;  4JRE A;  5GXB A;  1PV6 A;  4YB9 D;  3O7Q A;  4OH3 A;  4ZWB A;  4IKX A;  5D58 A;  4GBY A;  4IKV A;  4IU9 A;  4PYP A;  4D2C A;  4IKZ A;  4OAA A;  2V8N A;  4TPJ A;  5C65 A;  5D59 A;  4ZW9 A;  5EQI A;  4LEP A;  5EQH A;  3O7P A;  4LDS A;  1PV7 A;  4GBZ A;  4U4W A;  4JR9 A;  4ZWC A;  4D2B A;  1PW4 A;  4W6V A;  4XNJ A;  5A2N A;  4U4T A;  4GC0 A;  4IKW A;  4Q65 A;  4JA3 A;  4J05 A; 
#chains in the Genus database with same CATH topology
 1Z7C A;  4WRL B;  1BBN A;  4NI7 A;  4U4V A;  4ZF7 A;  4A3J D;  3DLQ I;  4A3L D;  3AYH A;  3WCY I;  2JA8 D;  5FHX A;  1ITL A;  1D9G A;  4GBY A;  1WCM D;  2L3Y A;  1FYH A;  3QAZ A;  1AXI A;  3Q1S I;  4NEM A;  3UF2 A;  3OQ3 A;  1IAR A;  1BGD A;  4D2D A;  5C3E D;  3TGX B;  3BPO A;  1WU3 I;  4ZWC A;  4W6V A;  2B8U A;  4YQX A;  1CD9 A;  3NCE A;  4CNI C;  5EQG A;  1HUL A;  2INT A;  4GS7 A;  5D70 A;  4XNI A;  1EMR A;  4BY7 D;  1BP3 A;  4OH3 A;  5D72 A;  4IKV A;  1HUW A;  3O7P A;  1KF9 A;  1PV7 A;  3EW3 A;  1BUY A;  1F45 B;  1SCF A;  3H0G D;  1IK0 A;  2B8X A;  4DKF A;  1RW5 A;  3PO2 D;  4YUE C;  1PGR A;  1F6F A;  1EKU A;  3OG6 A;  4BBS D;  4NN7 A;  1LKI A;  4PYP A;  1Y6N L;  1V7N V;  1M49 A;  4Q65 A;  5TS9 A;  1M47 A;  2E9W C;  1CN4 C;  3HOW D;  1RHG A;  4IU8 A;  4NEJ A;  1JLI A;  1HWH A;  1M4C A;  4O6K A;  4BBR D;  3O7Q A;  4DKE A;  2Q98 A;  4TPJ A;  4A3D D;  4LRL A;  1Z92 A;  2LMS A;  5A2N A;  1PW6 A;  5L6Y C;  3G9V B;  2O27 A;  2B8Y A;  5FLM D;  2VUM D;  1CNT 1;  2LAG A;  3HOV D;  2ILK A;  1EVS A;  3HOZ D;  4YB9 D;  3HOX D;  4D2C A;  1ETE A;  2XQB A;  5C4X D;  1YKB A;  3PO3 D;  3NCC A;  2CFQ A;  3I4M D;  3SE3 B;  1PY2 A;  4QIQ A;  1NBP A;  4GRW A;  1HZI A;  4Z5R D;  4DOH A;  4NN6 A;  5D58 A;  3HHC A;  2H24 A;  1BCN A;  2ERJ D;  5C44 D;  4LDS A;  1AU1 A;  2D48 A;  3H3V E;  3NCF A;  3DI3 A;  4DKC A;  1IL6 A;  4O9H A;  3PIW A;  2JA7 D;  2Z3R A;  4BXX D;  2Y5Y A;  4A3E D;  2KZ1 A;  4ZWB A;  5C7X A;  3HHR A;  4IKZ A;  1ITM A;  2B63 D;  4A3I D;  2Q14 A;  5KNH I;  4U4T A;  4GC0 A;  1P9M B;  4ZS7 A;  3UEZ E;  5IYC D;  1A7M A;  3BPL A;  4IKY A;  1J7V L;  1VLK A;  1GNC A;  1RFB A;  3DGC L;  1CSG A;  2CYK A;  1A22 A;  1M48 A;  2Z3Q A;  4IKX A;  5D22 A;  2V8N A;  2Q7N B;  4XNJ A;  3D85 C;  3G6D A;  3QB7 A;  1BGC A;  3DUH C;  5D6K A;  4A3K D;  5IYB D;  4A3B D;  2R93 D;  4UVM A;  1Y6M L;  1ITI A;  5IP7 D;  3MZG A;  2OQP A;  1FG9 A;  4OAA A;  5D59 A;  1N1F A;  1HGU A;  1CYL A;  1HWG A;  1Y1V D;  2JA6 D;  4YDY I;  2D9Q A;  2B90 A;  5A2O A;  1RCB A;  5LQB A;  1EER A;  1PV6 A;  3QB1 A;  4IU9 A;  1EXZ A;  4A93 D;  5EQH A;  3UF5 A;  1ALU A;  3NCB A;  2B5I A;  5FUC A;  1PVH B;  1INR A;  4NKQ C;  3BPN A;  3L5W I;  2PSM A;  3HOU D;  3QT2 C;  1ILK A;  4DKD A;  4A3F D;  4A3C D;  2B91 A;  3HMX B;  2IL6 A;  2B8Z A;  2XUT A;  4I77 Z;  4TPH A;  3D87 A;  2JA5 D;  3LB6 A;  1ITF A;  2O6I A;  1M4A A;  1LK3 A;  1BGE A;  1HIJ A;  3SE4 B;  5EQI A;  3QWR B;  2L3O A;  1PW4 A;  4MHL A;  5C65 A;  5IP9 D;  4YBQ A;  5IYD D;  3VA2 A;  2CFP A;  3IRH A;  4EXP A;  3S9D A;  3N06 A;  1I1R B;  4JRE A;  5GXB A;  3I4N D;  3NPZ A;  1Y6K L;  4A3G D;  3EJJ A;  1Y14 A;  4ZW9 A;  1M4B A;  3OG4 A;  3FKI D;  4D2B A;  1V7M V;  4A3M D;  1Y1W D;  3UX9 A;  4J4L C;  1GA3 A;  4BY1 D;  1LQS L;  4X51 A;  5D28 B;  1IRL A;  3N0P A;  3WDO A;  3INK C;  3B5K A;  2R92 D;  2C35 A;  4GBZ A;  3D48 P;  1M4R A;  3PIV A;  1B5L A;  4TPG A;  4APS A;  3BES L;  2GMF A;  1HIK A;  4PS4 A;  4FA8 E;  4ZYR A;  2R7Z D;  4EXN A;  3DI2 A;  4YPG C;  4NI9 A;  2HYM B;  4RS1 A;  5E4E A;  1D9C A;  1QVN A;  4NN5 A;  4LEP A;  3LB6 B;  3HOY D;  1IJZ A;  2O26 A;  4U4W A;  4JR9 A;  5D71 A;  1AX8 A;  3L5X A;  4IKW A;  4JA3 A;  4J05 A; 
#chains in the Genus database with same CATH homology
 4TPG A;  4APS A;  4YBQ A;  4IU8 A;  2CFQ A;  5EQG A;  2XUT A;  2CFP A;  5D6K A;  4IKY A;  4TPH A;  4XNI A;  4QIQ A;  5A2O A;  4U4V A;  3WDO A;  4ZYR A;  2Y5Y A;  4UVM A;  4D2D A;  4JRE A;  5GXB A;  1PV6 A;  4YB9 D;  3O7Q A;  4OH3 A;  4ZWB A;  4IKX A;  5D58 A;  4GBY A;  4IKV A;  4IU9 A;  4PYP A;  4D2C A;  4IKZ A;  4OAA A;  2V8N A;  4TPJ A;  5C65 A;  5D59 A;  4ZW9 A;  5EQI A;  4LEP A;  5EQH A;  3O7P A;  4LDS A;  1PV7 A;  4GBZ A;  4U4W A;  4JR9 A;  4ZWC A;  4D2B A;  1PW4 A;  4W6V A;  4XNJ A;  5A2N A;  4U4T A;  4GC0 A;  4IKW A;  4Q65 A;  4JA3 A;  4J05 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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