4XNLA

X-ray structure of alge2
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
452
structure length
425
Chain Sequence
PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title In meso in situ serial X-ray crystallography of soluble and membrane proteins.
pubmed doi rcsb
molecule keywords Alginate production protein AlgE
molecule tags Transport protein
source organism Pseudomonas aeruginosa pao1
total genus 124
structure length 425
sequence length 452
ec nomenclature
pdb deposition date 2015-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4xnlA00
5IYUA 4AZLA 5D5DA 3RBHA 4XNLA 4B61A 4XNKA 4AFKA
chains in the Genus database with same CATH superfamily
3HWBA 3T20A 4AZLA 3AAAA 3POQA 1MM4A 2XE5A 2X9KA 1ORMA 4O3ZA 1H6S1 1Q9FA 1BXWA 3KZIO 4C4VA 4AKRB 2QTKA 4FZMA 5B5EO 5G39A 3SY7A 4AYID 3LK2A 3G7GA 3AA6A 3PF1A 4RLCA 2KZ7B 3WI4A 3PQUA 4BUMX 8PRNA 3AA1B 5G38A 3QRCA 2MNHA 4JCHA 3KVDD 2R8AA 2Y0HA 2FGQX 2ZFGA 3LK3A 4LSHA 5DL8A 3AA7A 2Y2XA 5G26A 2ODJA 4RL9A 2N2LA 1MM5A 4O4XA 3VY8X 3QRAA 3UAQA 5H2FO 1ZHTA 2FGRA 1PHOA 2Y0LA 1GFQA 3AA0B 3C5OA 3DWOX 2ERVA 4RJWA 3TZGA 1GFPA 2ZLDA 5GV0A 3BS0A 4Z3TA 1QJPA 3EMNX 4FRTA 1YS5A 3WU2O 1GFNA 2N2MA 3VZUX 2R4PA 1P4TA 4N74A 4GCSA 7PRNA 1BH3A 3SYBA 4GCPA 4N58A 2W81C 4N59A 3SZVA 3HOEA 4N75A 4LSIA 4PJ0O 1THQA 2PRNA 3PGSA 2X27X 5JDPA 2KC0A 2JMMA 4C4VB 4D64A 5AFUK 3NJTA 3WI5A 3DZMA 3PRNA 3LK2B 5GTIO 2LHFA 3SZDA 2YNKA 1IZNB 3AAEA 1QJ9A 3AA6B 3GP6A 2GE4A 4AYNA 1BT9A 2F1VA 2MHLA 3FYXA 3LK41 4FQEA 4GCQA 4LSEA 1GFMA 5D5DA 4RLBA 4GHBA 1OSMA 4D65A 1S5LO 2R4LA 2M07A 2WVPA 4FT6A 4KR4A 2KXPA 2IWVA 5E79O 2XE1A 3VZTX 3LK3B 4AKRA 5DL7A 4FRXA 2XE3A 4FZNA 2F1CX 4PR7A 2R4NA 2KZ7A 4FESA 1ZHWA 3AA1A 4FOZA 4FUVA 2XTRA 1MPFA 4QQ1A 4JFBA 3A0BO 3HW9A 4KRAA 1HXUA 1Q9GA 3AAAB 4B61A 1T16A 3BRYA 4FSPA 4XNKA 3T0SA 3K19A 3A0HO 2K4TA 1T1LA 4K3BA 4G76A 2F1TA 3RBHA 2Y7SA 4UB6O 1ZHZA 3LK42 3PGUA 4UB8O 2OMFA 5DL5A 5KAFO 2KDYA 5AFUL 4FSOA 2JQYA 4O4UA 4AYDC 4RJXA 2W80C 2XG6A 4G75A 3PGRA 4C00A 3UPGA 4CTDA 1HXXA 2R89A 3JTYA 4O3XB 3UU2A 2WJQA 5FVNA 2J1NA 5EE2A 3V8UA 4AYEC 3DWNA 4PUXA 1ZHYA 3AAEB 3POXA 4GF4A 5KAIO 2M06A 4FZLA 4F4BA 1OPFA 2WJRA 4AKMA 2XMXA 2Y0KA 4FMSA 3AA7B 3NSGA 4IL6O 2R88A 4O49A 2XTQA 2KXPB 3HOLA 5B66O 5ADXK 5DL6A 4AUIA 5ADXL 2J4UP 3PORA 3VY9X 1G90A 4AYMC 1ZHXA 1IZNA 3PQSA 4K3CA 4D5UA 4E1TA 2XE2A 3POUA 3T24A 5PRNA 1HXTA 3A2SX 1QJ8A 1GFOA 2O4VA 5GTHO 4U9CA 5TISO 3VE1A 3VZWX 6PRNA 2R4OA 2YPVA 3AA0A 3DA3A 4E1SA 2IWWA 4O3WA 3DA4A 3JCUO 5G3AA 5IYUA 5T5FA 2LFUA 1PRNA 4O3YA 3SY9A 3O0EA 4XNLA 4KR8A 2AXTO 3BRZA 4LSFA 2K0LA 3SYSA 3VE2A 2PORA 4AFKA 1E54A 4C69X
chains in the Genus database with same CATH topology
3HWBA 3T20A 4AZLA 3AAAA 3POQA 1MM4A 2XE5A 1ORMA 4O3ZA 1H6S1 1Q9FA 1BXWA 4AKRB 2QTKA 4FZMA 3SY7A 3LK2A 3G7GA 3AA6A 4RLCA 2KZ7B 3WI4A 3PQUA 4BUMX 8PRNA 3AA1B 3QRCA 2MNHA 4JCHA 3KVDD 2Y0HA 2FGQX 2ZFGA 3LK3A 4LSHA 5DL8A 3AA7A 2Y2XA 5G26A 2ODJA 4RL9A 2N2LA 1MM5A 4O4XA 3VY8X 3QRAA 3UAQA 1ZHTA 2FGRA 1PHOA 2Y0LA 1GFQA 3AA0B 3C5OA 4RJWA 2ERVA 3TZGA 5GV0A 1GFPA 2ZLDA 4Z3TA 1QJPA 3EMNX 4FRTA 1YS5A 1GFNA 2N2MA 3VZUX 1P4TA 4GCSA 7PRNA 1BH3A 3SYBA 4GCPA 4N58A 2W81C 4N59A 3SZVA 3HOEA 4LSIA 1THQA 2PRNA 2X27X 5JDPA 2KC0A 2JMMA 4D64A 5AFUK 3WI5A 3PRNA 3LK2B 2LHFA 3SZDA 2YNKA 1IZNB 3AAEA 1QJ9A 3AA6B 3GP6A 2GE4A 4AYNA 1BT9A 2F1VA 2MHLA 3FYXA 3LK41 4GCQA 4LSEA 5D5DA 1GFMA 4D65A 4RLBA 4GHBA 1OSMA 3SYSA 2M07A 4FT6A 4KR4A 2KXPA 3VZTX 4AKRA 2XE1A 3LK3B 5DL7A 4FRXA 2XE3A 4FZNA 2KZ7A 4FESA 1ZHWA 3AA1A 4FOZA 4FUVA 2XTRA 1MPFA 4QQ1A 4JFBA 3HW9A 4KRAA 1HXUA 1Q9GA 3AAAB 4B61A 4FSPA 4XNKA 3T0SA 3K19A 2K4TA 4G76A 2F1TA 3RBHA 2Y7SA 1ZHZA 3LK42 5DL5A 2OMFA 5AFUL 2KDYA 4FSOA 4O4UA 4AYDC 4RJXA 2W80C 2XG6A 4G75A 3UPGA 1HXXA 3JTYA 4AYID 4O3XB 3UU2A 5FVNA 3V8UA 2J1NA 5EE2A 4AYEC 4PUXA 1ZHYA 3AAEB 3POXA 4GF4A 2M06A 4FZLA 4F4BA 1OPFA 4AKMA 2XMXA 2Y0KA 4FMSA 3AA7B 3NSGA 4O49A 2XTQA 2KXPB 3HOLA 5ADXK 5DL6A 4AUIA 5ADXL 2J4UP 3PORA 3VY9X 1G90A 4AYMC 1ZHXA 1IZNA 3PQSA 4D5UA 4E1TA 2XE2A 3POUA 3T24A 5PRNA 1HXTA 3A2SX 1QJ8A 1GFOA 2O4VA 4U9CA 3VE1A 3VZWX 6PRNA 2YPVA 3AA0A 3DA3A 4E1SA 4O3WA 3DA4A 5IYUA 5T5FA 2LFUA 1PRNA 4O3YA 3SY9A 3O0EA 4XNLA 4KR8A 4LSFA 2K0LA 3VE2A 2PORA 4AFKA 1E54A 4C69X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IYU A;  4AZL A;  5D5D A;  3RBH A;  4XNL A;  4B61 A;  4XNK A;  4AFK A; 
#chains in the Genus database with same CATH topology
 3HWB A;  3T20 A;  4AZL A;  3AAA A;  3POQ A;  1MM4 A;  2XE5 A;  2X9K A;  1ORM A;  4O3Z A;  1H6S 1;  1Q9F A;  1BXW A;  3KZI O;  4C4V A;  4AKR B;  2QTK A;  4FZM A;  5B5E O;  5G39 A;  3SY7 A;  4AYI D;  3LK2 A;  3G7G A;  3AA6 A;  3PF1 A;  4RLC A;  2KZ7 B;  3WI4 A;  3PQU A;  4BUM X;  8PRN A;  3AA1 B;  5G38 A;  3QRC A;  2MNH A;  4JCH A;  3KVD D;  2R8A A;  2Y0H A;  2FGQ X;  2ZFG A;  3LK3 A;  4LSH A;  5DL8 A;  3AA7 A;  2Y2X A;  5G26 A;  2ODJ A;  4RL9 A;  2N2L A;  1MM5 A;  4O4X A;  3VY8 X;  3QRA A;  3UAQ A;  5H2F O;  1ZHT A;  2FGR A;  1PHO A;  2Y0L A;  1GFQ A;  3AA0 B;  3C5O A;  3DWO X;  2ERV A;  4RJW A;  3TZG A;  1GFP A;  2ZLD A;  5GV0 A;  3BS0 A;  4Z3T A;  1QJP A;  3EMN X;  4FRT A;  1YS5 A;  3WU2 O;  1GFN A;  2N2M A;  3VZU X;  2R4P A;  1P4T A;  4N74 A;  4GCS A;  7PRN A;  1BH3 A;  3SYB A;  4GCP A;  4N58 A;  2W81 C;  4N59 A;  3SZV A;  3HOE A;  4N75 A;  4LSI A;  4PJ0 O;  1THQ A;  2PRN A;  3PGS A;  2X27 X;  5JDP A;  2KC0 A;  2JMM A;  4C4V B;  4D64 A;  5AFU K;  3NJT A;  3WI5 A;  3DZM A;  3PRN A;  3LK2 B;  5GTI O;  2LHF A;  3SZD A;  2YNK A;  1IZN B;  3AAE A;  1QJ9 A;  3AA6 B;  3GP6 A;  2GE4 A;  4AYN A;  1BT9 A;  2F1V A;  2MHL A;  3FYX A;  3LK4 1;  4FQE A;  4GCQ A;  4LSE A;  1GFM A;  5D5D A;  4RLB A;  4GHB A;  1OSM A;  4D65 A;  1S5L O;  2R4L A;  2M07 A;  2WVP A;  4FT6 A;  4KR4 A;  2KXP A;  2IWV A;  5E79 O;  2XE1 A;  3VZT X;  3LK3 B;  4AKR A;  5DL7 A;  4FRX A;  2XE3 A;  4FZN A;  2F1C X;  4PR7 A;  2R4N A;  2KZ7 A;  4FES A;  1ZHW A;  3AA1 A;  4FOZ A;  4FUV A;  2XTR A;  1MPF A;  4QQ1 A;  4JFB A;  3A0B O;  3HW9 A;  4KRA A;  1HXU A;  1Q9G A;  3AAA B;  4B61 A;  1T16 A;  3BRY A;  4FSP A;  4XNK A;  3T0S A;  3K19 A;  3A0H O;  2K4T A;  1T1L A;  4K3B A;  4G76 A;  2F1T A;  3RBH A;  2Y7S A;  4UB6 O;  1ZHZ A;  3LK4 2;  3PGU A;  4UB8 O;  2OMF A;  5DL5 A;  5KAF O;  2KDY A;  5AFU L;  4FSO A;  2JQY A;  4O4U A;  4AYD C;  4RJX A;  2W80 C;  2XG6 A;  4G75 A;  3PGR A;  4C00 A;  3UPG A;  4CTD A;  1HXX A;  2R89 A;  3JTY A;  4O3X B;  3UU2 A;  2WJQ A;  5FVN A;  2J1N A;  5EE2 A;  3V8U A;  4AYE C;  3DWN A;  4PUX A;  1ZHY A;  3AAE B;  3POX A;  4GF4 A;  5KAI O;  2M06 A;  4FZL A;  4F4B A;  1OPF A;  2WJR A;  4AKM A;  2XMX A;  2Y0K A;  4FMS A;  3AA7 B;  3NSG A;  4IL6 O;  2R88 A;  4O49 A;  2XTQ A;  2KXP B;  3HOL A;  5B66 O;  5ADX K;  5DL6 A;  4AUI A;  5ADX L;  2J4U P;  3POR A;  3VY9 X;  1G90 A;  4AYM C;  1ZHX A;  1IZN A;  3PQS A;  4K3C A;  4D5U A;  4E1T A;  2XE2 A;  3POU A;  3T24 A;  5PRN A;  1HXT A;  3A2S X;  1QJ8 A;  1GFO A;  2O4V A;  5GTH O;  4U9C A;  5TIS O;  3VE1 A;  3VZW X;  6PRN A;  2R4O A;  2YPV A;  3AA0 A;  3DA3 A;  4E1S A;  2IWW A;  4O3W A;  3DA4 A;  3JCU O;  5G3A A;  5IYU A;  5T5F A;  2LFU A;  1PRN A;  4O3Y A;  3SY9 A;  3O0E A;  4XNL A;  4KR8 A;  2AXT O;  3BRZ A;  4LSF A;  2K0L A;  3SYS A;  3VE2 A;  2POR A;  4AFK A;  1E54 A;  4C69 X; 
#chains in the Genus database with same CATH homology
 3HWB A;  3T20 A;  4AZL A;  3AAA A;  3POQ A;  1MM4 A;  2XE5 A;  1ORM A;  4O3Z A;  1H6S 1;  1Q9F A;  1BXW A;  4AKR B;  2QTK A;  4FZM A;  3SY7 A;  3LK2 A;  3G7G A;  3AA6 A;  4RLC A;  2KZ7 B;  3WI4 A;  3PQU A;  4BUM X;  8PRN A;  3AA1 B;  3QRC A;  2MNH A;  4JCH A;  3KVD D;  2Y0H A;  2FGQ X;  2ZFG A;  3LK3 A;  4LSH A;  5DL8 A;  3AA7 A;  2Y2X A;  5G26 A;  2ODJ A;  4RL9 A;  2N2L A;  1MM5 A;  4O4X A;  3VY8 X;  3QRA A;  3UAQ A;  1ZHT A;  2FGR A;  1PHO A;  2Y0L A;  1GFQ A;  3AA0 B;  3C5O A;  4RJW A;  2ERV A;  3TZG A;  5GV0 A;  1GFP A;  2ZLD A;  4Z3T A;  1QJP A;  3EMN X;  4FRT A;  1YS5 A;  1GFN A;  2N2M A;  3VZU X;  1P4T A;  4GCS A;  7PRN A;  1BH3 A;  3SYB A;  4GCP A;  4N58 A;  2W81 C;  4N59 A;  3SZV A;  3HOE A;  4LSI A;  1THQ A;  2PRN A;  2X27 X;  5JDP A;  2KC0 A;  2JMM A;  4D64 A;  5AFU K;  3WI5 A;  3PRN A;  3LK2 B;  2LHF A;  3SZD A;  2YNK A;  1IZN B;  3AAE A;  1QJ9 A;  3AA6 B;  3GP6 A;  2GE4 A;  4AYN A;  1BT9 A;  2F1V A;  2MHL A;  3FYX A;  3LK4 1;  4GCQ A;  4LSE A;  5D5D A;  1GFM A;  4D65 A;  4RLB A;  4GHB A;  1OSM A;  3SYS A;  2M07 A;  4FT6 A;  4KR4 A;  2KXP A;  3VZT X;  4AKR A;  2XE1 A;  3LK3 B;  5DL7 A;  4FRX A;  2XE3 A;  4FZN A;  2KZ7 A;  4FES A;  1ZHW A;  3AA1 A;  4FOZ A;  4FUV A;  2XTR A;  1MPF A;  4QQ1 A;  4JFB A;  3HW9 A;  4KRA A;  1HXU A;  1Q9G A;  3AAA B;  4B61 A;  4FSP A;  4XNK A;  3T0S A;  3K19 A;  2K4T A;  4G76 A;  2F1T A;  3RBH A;  2Y7S A;  1ZHZ A;  3LK4 2;  5DL5 A;  2OMF A;  5AFU L;  2KDY A;  4FSO A;  4O4U A;  4AYD C;  4RJX A;  2W80 C;  2XG6 A;  4G75 A;  3UPG A;  1HXX A;  3JTY A;  4AYI D;  4O3X B;  3UU2 A;  5FVN A;  3V8U A;  2J1N A;  5EE2 A;  4AYE C;  4PUX A;  1ZHY A;  3AAE B;  3POX A;  4GF4 A;  2M06 A;  4FZL A;  4F4B A;  1OPF A;  4AKM A;  2XMX A;  2Y0K A;  4FMS A;  3AA7 B;  3NSG A;  4O49 A;  2XTQ A;  2KXP B;  3HOL A;  5ADX K;  5DL6 A;  4AUI A;  5ADX L;  2J4U P;  3POR A;  3VY9 X;  1G90 A;  4AYM C;  1ZHX A;  1IZN A;  3PQS A;  4D5U A;  4E1T A;  2XE2 A;  3POU A;  3T24 A;  5PRN A;  1HXT A;  3A2S X;  1QJ8 A;  1GFO A;  2O4V A;  4U9C A;  3VE1 A;  3VZW X;  6PRN A;  2YPV A;  3AA0 A;  3DA3 A;  4E1S A;  4O3W A;  3DA4 A;  5IYU A;  5T5F A;  2LFU A;  1PRN A;  4O3Y A;  3SY9 A;  3O0E A;  4XNL A;  4KR8 A;  4LSF A;  2K0L A;  3VE2 A;  2POR A;  4AFK A;  1E54 A;  4C69 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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