4XNLA

X-ray structure of alge2
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
452
structure length
425
Chain Sequence
PKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Alginate production protein AlgE
publication title In meso in situ serial X-ray crystallography of soluble and membrane proteins.
pubmed doi rcsb
source organism Pseudomonas aeruginosa pao1
molecule tags Transport protein
total genus 124
structure length 425
sequence length 452
ec nomenclature
pdb deposition date 2015-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4xnlA00
5D5DA 3RBHA 5IYUA 4B61A 4XNLA 4AZLA 4AFKA 4XNKA
chains in the Genus database with same CATH superfamily
3PQSA 2N2LA 3HOLA 7PRNA 5DL5A 3QRAA 3VE2A 4BUMX 1QJ8A 3AA1B 5GTHO 1G90A 4RL9A 3FYXA 3C5OA 2GE4A 3VY9X 4Z3TA 2F1VA 3BS0A 1BT9A 4C69X 1IZNB 3UU2A 3AA7A 3PRNA 2YNKA 3T20A 3AAAA 3SY9A 3AA0A 4FZNA 4AYMC 2X9KA 5H2FO 3HOEA 2R88A 4FRTA 3DZMA 3LK2A 1ZHZA 4FUVA 4RJXA 4RLBA 3KVDD 1ORMA 5B66O 5G38A 4LSFA 2JQYA 4JCHA 1OSMA 1MM5A 2W81C 2FGRA 2Y7SA 2FGQX 3A0BO 2ZFGA 2F1CX 3AA6A 3UAQA 1Q9GA 4E1SA 5GTIO 2WJRA 3QRCA 2O4VA 2PRNA 3AA7B 2AXTO 2KZ7B 4O4XA 4KRAA 4GHBA 4N74A 4D65A 3HWBA 2MHLA 1THQA 3AAAB 2F1TA 2X27X 3NSGA 4O3YA 1MM4A 3A2SX 3WI5A 2W80C 3POUA 3O0EA 4U9CA 3LK3A 2K0LA 3UPGA 3A0HO 4GF4A 3VZUX 2Y2XA 5T5FA 3T24A 1ZHXA 2KC0A 3PF1A 3WI4A 1H6S1 1ZHTA 2IWWA 1YS5A 4E1TA 3K19A 4KR4A 3DWNA 2XE2A 1ZHWA 3AA6B 4FESA 4UB6O 4C4VB 1HXTA 4O3WA 2PORA 4PUXA 3PGRA 4N58A 4F4BA 5JDPA 5B5EO 2R89A 3TZGA 2WJQA 2XE1A 2XG6A 2Y0KA 3PQUA 4AYDC 2J4UP 3T0SA 5D5DA 3AAEA 2KXPA 1OPFA 4FZMA 3DA4A 4GCPA 1ZHYA 4C00A 5ADXL 3VZWX 2M06A 4IL6O 3SY7A 2XTQA 5ADXK 3EMNX 2R8AA 4LSEA 4D64A 3LK42 1BH3A 3BRYA 2JMMA 2MNHA 3AA0B 5E79O 1GFMA 4FQEA 4N75A 1HXXA 3LK41 5DL6A 3LK2B 3DA3A 4RLCA 2XMXA 3JTYA 5KAFO 3VY8X 4AKMA 3AA1A 2Y0LA 4CTDA 4O4UA 5G39A 4G75A 3VE1A 5KAIO 4AFKA 4AYID 1IZNA 1GFOA 2OMFA 3DWOX 4UB8O 5FVNA 2R4LA 4AKRA 4AYEC 1T1LA 4LSHA 4FOZA 2KDYA 2ERVA 2R4OA 4FZLA 4K3BA 4N59A 1HXUA 4FT6A 3BRZA 1T16A 2QTKA 3GP6A 4FMSA 4GCQA 5GV0A 2IWVA 5AFUL 1PRNA 2R4NA 4KR8A 4QQ1A 1BXWA 1E54A 1Q9FA 1S5LO 2LHFA 2XE5A 3LK3B 4GCSA 1GFQA 3WU2O 5AFUK 2M07A 2J1NA 3POQA 4G76A 4O49A 3HW9A 5DL7A 4B61A 5IYUA 4PR7A 8PRNA 4RJWA 4XNLA 3PORA 5PRNA 4FSPA 1P4TA 3NJTA 2KZ7A 3PGUA 2XTRA 3JCUO 5G26A 4AKRB 2Y0HA 1QJ9A 2R4PA 4XNKA 3RBHA 3SZDA 4AUIA 4D5UA 4JFBA 3G7GA 3SYBA 2YPVA 4AYNA 1GFNA 2ODJA 4K3CA 5DL8A 5EE2A 3AAEB 4LSIA 2KXPB 1QJPA 3SZVA 2LFUA 2WVPA 2XE3A 4FRXA 4PJ0O 5G3AA 4AZLA 4C4VA 3PGSA 4O3ZA 3V8UA 2ZLDA 1MPFA 2K4TA 1GFPA 4O3XB 3KZIO 3SYSA 1PHOA 6PRNA 5TISO 3POXA 3VZTX 2N2MA 4FSOA
chains in the Genus database with same CATH topology
3PQSA 2N2LA 3HOLA 7PRNA 5DL5A 3QRAA 3VE2A 4BUMX 1QJ8A 3AA1B 1G90A 4RL9A 3FYXA 3C5OA 2GE4A 3VY9X 4Z3TA 2F1VA 1BT9A 4C69X 1IZNB 3UU2A 3AA7A 3PRNA 2YNKA 3T20A 3AAAA 3SY9A 3AA0A 4FZNA 4AYMC 3HOEA 4FRTA 3LK2A 4FUVA 1ZHZA 4RJXA 4RLBA 3KVDD 1ORMA 4LSFA 4JCHA 1OSMA 1MM5A 2W81C 2FGRA 2Y7SA 2FGQX 2ZFGA 3UAQA 3AA6A 1Q9GA 4E1SA 3QRCA 2O4VA 2PRNA 3AA7B 2KZ7B 4O4XA 4KRAA 4GHBA 3HWBA 2MHLA 1THQA 3AAAB 2F1TA 2X27X 3NSGA 4O3YA 1MM4A 3A2SX 3WI5A 2W80C 3POUA 3O0EA 4U9CA 3LK3A 2K0LA 3UPGA 4GF4A 3VZUX 2Y2XA 5T5FA 3T24A 1ZHXA 2KC0A 3WI4A 1H6S1 1ZHTA 1YS5A 4E1TA 3K19A 4KR4A 4FESA 2XE2A 1ZHWA 3AA6B 1HXTA 4O3WA 2PORA 4PUXA 4N58A 4F4BA 5JDPA 3TZGA 2XG6A 2XE1A 2Y0KA 3PQUA 4AYDC 2J4UP 3T0SA 5D5DA 3AAEA 2KXPA 1OPFA 4FZMA 3DA4A 4GCPA 1ZHYA 5ADXL 3VZWX 2M06A 3SY7A 2XTQA 5ADXK 3EMNX 4LSEA 4D64A 3LK42 1BH3A 2JMMA 2MNHA 3AA0B 1GFMA 1HXXA 3LK41 5DL6A 3LK2B 3DA3A 4RLCA 2XMXA 3JTYA 3VY8X 4AKMA 3AA1A 2Y0LA 4O4UA 4G75A 3VE1A 4AFKA 4AYID 1IZNA 1GFOA 2OMFA 5FVNA 4AYEC 4AKRA 4LSHA 4FOZA 2KDYA 2ERVA 4FZLA 4N59A 1HXUA 4FT6A 2QTKA 3GP6A 4GCQA 4FMSA 5GV0A 5AFUL 1PRNA 4KR8A 4QQ1A 1BXWA 1E54A 1Q9FA 2LHFA 3LK3B 2XE5A 4GCSA 5AFUK 1GFQA 2M07A 2J1NA 3POQA 4G76A 4O49A 3HW9A 5DL7A 4B61A 5IYUA 8PRNA 4RJWA 4XNLA 3PORA 5PRNA 4FSPA 1P4TA 2KZ7A 5G26A 2XTRA 4AKRB 4AUIA 4D5UA 2Y0HA 1QJ9A 3RBHA 4XNKA 3SZDA 4D65A 4JFBA 3G7GA 3SYBA 2YPVA 4AYNA 1GFNA 2ODJA 5DL8A 5EE2A 3AAEB 4LSIA 2KXPB 1QJPA 3SZVA 2LFUA 2XE3A 4FRXA 4AZLA 4O3ZA 3V8UA 2ZLDA 1MPFA 2K4TA 1GFPA 4O3XB 3SYSA 1PHOA 6PRNA 3POXA 3VZTX 2N2MA 4FSOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D5D A;  3RBH A;  5IYU A;  4B61 A;  4XNL A;  4AZL A;  4AFK A;  4XNK A; 
#chains in the Genus database with same CATH topology
 3PQS A;  2N2L A;  3HOL A;  7PRN A;  5DL5 A;  3QRA A;  3VE2 A;  4BUM X;  1QJ8 A;  3AA1 B;  5GTH O;  1G90 A;  4RL9 A;  3FYX A;  3C5O A;  2GE4 A;  3VY9 X;  4Z3T A;  2F1V A;  3BS0 A;  1BT9 A;  4C69 X;  1IZN B;  3UU2 A;  3AA7 A;  3PRN A;  2YNK A;  3T20 A;  3AAA A;  3SY9 A;  3AA0 A;  4FZN A;  4AYM C;  2X9K A;  5H2F O;  3HOE A;  2R88 A;  4FRT A;  3DZM A;  3LK2 A;  1ZHZ A;  4FUV A;  4RJX A;  4RLB A;  3KVD D;  1ORM A;  5B66 O;  5G38 A;  4LSF A;  2JQY A;  4JCH A;  1OSM A;  1MM5 A;  2W81 C;  2FGR A;  2Y7S A;  2FGQ X;  3A0B O;  2ZFG A;  2F1C X;  3AA6 A;  3UAQ A;  1Q9G A;  4E1S A;  5GTI O;  2WJR A;  3QRC A;  2O4V A;  2PRN A;  3AA7 B;  2AXT O;  2KZ7 B;  4O4X A;  4KRA A;  4GHB A;  4N74 A;  4D65 A;  3HWB A;  2MHL A;  1THQ A;  3AAA B;  2F1T A;  2X27 X;  3NSG A;  4O3Y A;  1MM4 A;  3A2S X;  3WI5 A;  2W80 C;  3POU A;  3O0E A;  4U9C A;  3LK3 A;  2K0L A;  3UPG A;  3A0H O;  4GF4 A;  3VZU X;  2Y2X A;  5T5F A;  3T24 A;  1ZHX A;  2KC0 A;  3PF1 A;  3WI4 A;  1H6S 1;  1ZHT A;  2IWW A;  1YS5 A;  4E1T A;  3K19 A;  4KR4 A;  3DWN A;  2XE2 A;  1ZHW A;  3AA6 B;  4FES A;  4UB6 O;  4C4V B;  1HXT A;  4O3W A;  2POR A;  4PUX A;  3PGR A;  4N58 A;  4F4B A;  5JDP A;  5B5E O;  2R89 A;  3TZG A;  2WJQ A;  2XE1 A;  2XG6 A;  2Y0K A;  3PQU A;  4AYD C;  2J4U P;  3T0S A;  5D5D A;  3AAE A;  2KXP A;  1OPF A;  4FZM A;  3DA4 A;  4GCP A;  1ZHY A;  4C00 A;  5ADX L;  3VZW X;  2M06 A;  4IL6 O;  3SY7 A;  2XTQ A;  5ADX K;  3EMN X;  2R8A A;  4LSE A;  4D64 A;  3LK4 2;  1BH3 A;  3BRY A;  2JMM A;  2MNH A;  3AA0 B;  5E79 O;  1GFM A;  4FQE A;  4N75 A;  1HXX A;  3LK4 1;  5DL6 A;  3LK2 B;  3DA3 A;  4RLC A;  2XMX A;  3JTY A;  5KAF O;  3VY8 X;  4AKM A;  3AA1 A;  2Y0L A;  4CTD A;  4O4U A;  5G39 A;  4G75 A;  3VE1 A;  5KAI O;  4AFK A;  4AYI D;  1IZN A;  1GFO A;  2OMF A;  3DWO X;  4UB8 O;  5FVN A;  2R4L A;  4AKR A;  4AYE C;  1T1L A;  4LSH A;  4FOZ A;  2KDY A;  2ERV A;  2R4O A;  4FZL A;  4K3B A;  4N59 A;  1HXU A;  4FT6 A;  3BRZ A;  1T16 A;  2QTK A;  3GP6 A;  4FMS A;  4GCQ A;  5GV0 A;  2IWV A;  5AFU L;  1PRN A;  2R4N A;  4KR8 A;  4QQ1 A;  1BXW A;  1E54 A;  1Q9F A;  1S5L O;  2LHF A;  2XE5 A;  3LK3 B;  4GCS A;  1GFQ A;  3WU2 O;  5AFU K;  2M07 A;  2J1N A;  3POQ A;  4G76 A;  4O49 A;  3HW9 A;  5DL7 A;  4B61 A;  5IYU A;  4PR7 A;  8PRN A;  4RJW A;  4XNL A;  3POR A;  5PRN A;  4FSP A;  1P4T A;  3NJT A;  2KZ7 A;  3PGU A;  2XTR A;  3JCU O;  5G26 A;  4AKR B;  2Y0H A;  1QJ9 A;  2R4P A;  4XNK A;  3RBH A;  3SZD A;  4AUI A;  4D5U A;  4JFB A;  3G7G A;  3SYB A;  2YPV A;  4AYN A;  1GFN A;  2ODJ A;  4K3C A;  5DL8 A;  5EE2 A;  3AAE B;  4LSI A;  2KXP B;  1QJP A;  3SZV A;  2LFU A;  2WVP A;  2XE3 A;  4FRX A;  4PJ0 O;  5G3A A;  4AZL A;  4C4V A;  3PGS A;  4O3Z A;  3V8U A;  2ZLD A;  1MPF A;  2K4T A;  1GFP A;  4O3X B;  3KZI O;  3SYS A;  1PHO A;  6PRN A;  5TIS O;  3POX A;  3VZT X;  2N2M A;  4FSO A; 
#chains in the Genus database with same CATH homology
 3PQS A;  2N2L A;  3HOL A;  7PRN A;  5DL5 A;  3QRA A;  3VE2 A;  4BUM X;  1QJ8 A;  3AA1 B;  1G90 A;  4RL9 A;  3FYX A;  3C5O A;  2GE4 A;  3VY9 X;  4Z3T A;  2F1V A;  1BT9 A;  4C69 X;  1IZN B;  3UU2 A;  3AA7 A;  3PRN A;  2YNK A;  3T20 A;  3AAA A;  3SY9 A;  3AA0 A;  4FZN A;  4AYM C;  3HOE A;  4FRT A;  3LK2 A;  4FUV A;  1ZHZ A;  4RJX A;  4RLB A;  3KVD D;  1ORM A;  4LSF A;  4JCH A;  1OSM A;  1MM5 A;  2W81 C;  2FGR A;  2Y7S A;  2FGQ X;  2ZFG A;  3UAQ A;  3AA6 A;  1Q9G A;  4E1S A;  3QRC A;  2O4V A;  2PRN A;  3AA7 B;  2KZ7 B;  4O4X A;  4KRA A;  4GHB A;  3HWB A;  2MHL A;  1THQ A;  3AAA B;  2F1T A;  2X27 X;  3NSG A;  4O3Y A;  1MM4 A;  3A2S X;  3WI5 A;  2W80 C;  3POU A;  3O0E A;  4U9C A;  3LK3 A;  2K0L A;  3UPG A;  4GF4 A;  3VZU X;  2Y2X A;  5T5F A;  3T24 A;  1ZHX A;  2KC0 A;  3WI4 A;  1H6S 1;  1ZHT A;  1YS5 A;  4E1T A;  3K19 A;  4KR4 A;  4FES A;  2XE2 A;  1ZHW A;  3AA6 B;  1HXT A;  4O3W A;  2POR A;  4PUX A;  4N58 A;  4F4B A;  5JDP A;  3TZG A;  2XG6 A;  2XE1 A;  2Y0K A;  3PQU A;  4AYD C;  2J4U P;  3T0S A;  5D5D A;  3AAE A;  2KXP A;  1OPF A;  4FZM A;  3DA4 A;  4GCP A;  1ZHY A;  5ADX L;  3VZW X;  2M06 A;  3SY7 A;  2XTQ A;  5ADX K;  3EMN X;  4LSE A;  4D64 A;  3LK4 2;  1BH3 A;  2JMM A;  2MNH A;  3AA0 B;  1GFM A;  1HXX A;  3LK4 1;  5DL6 A;  3LK2 B;  3DA3 A;  4RLC A;  2XMX A;  3JTY A;  3VY8 X;  4AKM A;  3AA1 A;  2Y0L A;  4O4U A;  4G75 A;  3VE1 A;  4AFK A;  4AYI D;  1IZN A;  1GFO A;  2OMF A;  5FVN A;  4AYE C;  4AKR A;  4LSH A;  4FOZ A;  2KDY A;  2ERV A;  4FZL A;  4N59 A;  1HXU A;  4FT6 A;  2QTK A;  3GP6 A;  4GCQ A;  4FMS A;  5GV0 A;  5AFU L;  1PRN A;  4KR8 A;  4QQ1 A;  1BXW A;  1E54 A;  1Q9F A;  2LHF A;  3LK3 B;  2XE5 A;  4GCS A;  5AFU K;  1GFQ A;  2M07 A;  2J1N A;  3POQ A;  4G76 A;  4O49 A;  3HW9 A;  5DL7 A;  4B61 A;  5IYU A;  8PRN A;  4RJW A;  4XNL A;  3POR A;  5PRN A;  4FSP A;  1P4T A;  2KZ7 A;  5G26 A;  2XTR A;  4AKR B;  4AUI A;  4D5U A;  2Y0H A;  1QJ9 A;  3RBH A;  4XNK A;  3SZD A;  4D65 A;  4JFB A;  3G7G A;  3SYB A;  2YPV A;  4AYN A;  1GFN A;  2ODJ A;  5DL8 A;  5EE2 A;  3AAE B;  4LSI A;  2KXP B;  1QJP A;  3SZV A;  2LFU A;  2XE3 A;  4FRX A;  4AZL A;  4O3Z A;  3V8U A;  2ZLD A;  1MPF A;  2K4T A;  1GFP A;  4O3X B;  3SYS A;  1PHO A;  6PRN A;  3POX A;  3VZT X;  2N2M A;  4FSO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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