4XQMA

Crystal structure of the mrh domain of glucosidase ii beta bound to mannose
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
94
structure length
94
Chain Sequence
YRAIKGMETKREIGGYTYKVVFYENVFQDSILLGNFASQEGNVLKYENGQSCWNGPHRSAIVTVECGVENEIVSVLEAQKCEYLIKMKSPAACS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Glucosidase 2 subunit beta
publication title Crystal Structure and Functional Analyses of the Lectin Domain of Glucosidase II: Insights into Oligomannose Recognition.
pubmed doi rcsb
source organism Schizosaccharomyces pombe (strain 972 / atcc 24843)
total genus 21
structure length 94
sequence length 94
ec nomenclature ec 3.2.1.84: Glucan 1,3-alpha-glucosidase.
pdb deposition date 2015-01-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.130.10 Mainly Beta Distorted Sandwich Cation-dependent Mannose-6-phosphate Receptor; Chain A Mannose-6-phosphate receptor binding domain 4xqmA00
1GQBA 2KVBA 2KVAA 2RL9A 1SYOA 3AIHA 1Q25A 1SZ0A 1KEOA 2L2GA 2M68A 2N1HA 2LLAA 2RL7A 3K43A 1GP3A 4XQMA 5IEIA 2V5NA 2LVXA 2L2AA 2V5OA 2L29A 2CNJD 3K41A 3CY4A 2RL8A 3K42A 1C39A 1GP0A 2M6TA 2RLBA 2L21A 1M6PA 1E6FA
chains in the Genus database with same CATH superfamily
1GQBA 2KVBA 2KVAA 2RL9A 1SYOA 3AIHA 1Q25A 1SZ0A 1KEOA 2L2GA 2M68A 2N1HA 2LLAA 2RL7A 3K43A 1GP3A 4XQMA 5IEIA 2V5NA 2LVXA 2L2AA 2V5OA 2L29A 2CNJD 3K41A 3CY4A 2RL8A 3K42A 1C39A 1GP0A 2M6TA 2RLBA 2L21A 1M6PA 1E6FA
chains in the Genus database with same CATH topology
1GQBA 2KVBA 2KVAA 2RL9A 1SYOA 3AIHA 1Q25A 1SZ0A 1KEOA 2L2GA 2M68A 2N1HA 2LLAA 2RL7A 3K43A 1GP3A 4XQMA 5IEIA 2V5NA 2LVXA 2L2AA 2V5OA 2L29A 2CNJD 3K41A 3CY4A 2RL8A 3K42A 1C39A 1GP0A 2M6TA 2RLBA 2L21A 1M6PA 1E6FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GQB A;  2KVB A;  2KVA A;  2RL9 A;  1SYO A;  3AIH A;  1Q25 A;  1SZ0 A;  1KEO A;  2L2G A;  2M68 A;  2N1H A;  2LLA A;  2RL7 A;  3K43 A;  1GP3 A;  4XQM A;  5IEI A;  2V5N A;  2LVX A;  2L2A A;  2V5O A;  2L29 A;  2CNJ D;  3K41 A;  3CY4 A;  2RL8 A;  3K42 A;  1C39 A;  1GP0 A;  2M6T A;  2RLB A;  2L21 A;  1M6P A;  1E6F A; 
#chains in the Genus database with same CATH topology
 1GQB A;  2KVB A;  2KVA A;  2RL9 A;  1SYO A;  3AIH A;  1Q25 A;  1SZ0 A;  1KEO A;  2L2G A;  2M68 A;  2N1H A;  2LLA A;  2RL7 A;  3K43 A;  1GP3 A;  4XQM A;  5IEI A;  2V5N A;  2LVX A;  2L2A A;  2V5O A;  2L29 A;  2CNJ D;  3K41 A;  3CY4 A;  2RL8 A;  3K42 A;  1C39 A;  1GP0 A;  2M6T A;  2RLB A;  2L21 A;  1M6P A;  1E6F A; 
#chains in the Genus database with same CATH homology
 1GQB A;  2KVB A;  2KVA A;  2RL9 A;  1SYO A;  3AIH A;  1Q25 A;  1SZ0 A;  1KEO A;  2L2G A;  2M68 A;  2N1H A;  2LLA A;  2RL7 A;  3K43 A;  1GP3 A;  4XQM A;  5IEI A;  2V5N A;  2LVX A;  2L2A A;  2V5O A;  2L29 A;  2CNJ D;  3K41 A;  3CY4 A;  2RL8 A;  3K42 A;  1C39 A;  1GP0 A;  2M6T A;  2RLB A;  2L21 A;  1M6P A;  1E6F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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