4XR5A

X-ray structure of the unliganded thymidine phosphorylase from salmonella typhimurium at 2.05 a resolution
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
440
structure length
440
Chain Sequence
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIQDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITGSILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGQLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPSDFVENYDKYLPTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDSIDGQRPLAVIHAKDEASWQEAAKAVKAAIILDDKAPASTPSVYRRITE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Thymidine phosphorylase
publication title Structural investigation of the thymidine phosphorylase from Salmonella typhimurium in the unliganded state and its complexes with thymidine and uridine.
pubmed doi rcsb
source organism Salmonella enterica subsp. enterica serovar typhimurium
total genus 154
structure length 440
sequence length 440
chains with identical sequence B
ec nomenclature ec 2.4.2.4: Thymidine phosphorylase.
pdb deposition date 2015-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
A PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
A PF07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.970.10 Mainly Alpha Up-down Bundle Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 4xr5A01
3.40.1030.10 Alpha Beta 3-Layer(aba) Sandwich Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 4xr5A02
3.90.1170.30 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Pyrimidine nucleoside phosphorylase-like, C-terminal domain 4xr5A03
4ZOJA 4X46A 3QR9A 4GIUA 4OWOA 4OWUA 5BO2A 3H5QA 1ZVWA 5EY3A 1ZXYA 1GXBA 3R6CA 5C1RA 4X59A 1AZYA 2GVQA 2BPQA 4OWQA 4X5EA 4X58A 5C7SA 4YI7A 1O17A 1VQUA 4ZOKA 4OWMA 3GBRA 4OWSA 5C2LA 2ELCA 2WK5A 3QSAA 4N5VA 3QS8A 1UOUA 4ZTVA 1KGZA 3UU1A 4IJ1A 4X5BA 4N8QA 4X5CA 4XR5A 3R88A 4X5DA 4GKMA 2J0FA 5BO3A 2TPTA 4YYYA 4MUOA 4GA4A 1V8GA 4M0RA 4HKMA 1KHDA 4OWVA 4X5AA 4EADA 2DSJA 4YEKA 4GA5A 4N93A 3TWPA 4LHMA 1BRWA 4GTNA 4OWNA 5BNEA 1ZYKA 4ZOFA 5EP8A 4GA6A 1OTPA 4EAFA 5BYTA 2WK6A 3QQSA
chains in the Genus database with same CATH superfamily
3DLLJ 3BIIE 4ZOJA 4X46A 4C7YA 1N8RJ 3FC4A 1VQ6H 5GAGN 1VQPH 1KQSH 3QR9A 4GIUA 4OWOA 4OWUA 5BO2A 2Q5WE 3H5QA 1ZVWA 5EY3A 2W3SB 3B9JC 5GADN 1ZXYA 3CCRH 1QVFH 1N60B 3SR6C 1Q81J 1FO4A 1JJ2H 1GXBA 2B7NA 1FFVB 4US9A 3R6CA 4WFAJ 3PIPJ 1V97A 1Y69K 3NRZC 2I14A 5C1RA 3C2VA 4X59A 3NVZC 3CCVH 1Q7YJ 1YTDA 4WFNJ 1AZYA 2W3RB 1YJ9H 2GVQA 2BPQA 3FAHA 1QPRA 5AN9F 2ZJRJ 1VLBA 1FIQC 4OWQA 4X5EA 4X58A 1X1OA 3L0GA 1VQ9H 5C7SA 4YI7A 1ZXIB 5GAHN 1O17A 1VQOH 2QA4H 1YITH 3J7ZM 1W2BH 3CC7H 1QVGH 3PIOJ 1QPQA 4U67J 1SIJA 1YI2H 2B7QA 1VQUA 4ZOKA 2WP4A 4OWMA 3C2EA 4UY8M 3OW2H 1K8AJ 3CD6H 2ZJQJ 5DM6J 1VQ8H 3GBRA 4OWSA 5C2LA 2I1OA 3WO1A 3RPFA 1N5XA 2ELCA 4F3FC 2OTLH 5JVGJ 4USAA 1QAPA 1YJWH 5JVHJ 3CMEH 3CCUH 5HUPA 5AYZA 2WK5A 3CC4H 1WYGA 3QSAA 3CF5J 4KWVA 4N5VA 3QS8A 1UOUA 4ZTVA 1KGZA 3NS1C 3UU1A 1SB3A 5AYXA 4WFBJ 4IJ1A 1N63B 4X5BA 1FM0E 4N8QA 4IO9J 2OTJH 1N5WB 1VQKH 4X5CA 3I56H 3NVVC 1RF8B 4XR5A 3R88A 1Q86J 4X5DA 1VQLH 3TQVA 4GKMA 1KC8J 1WKIA 2JBMA 2J0FA 1FFUB 5BO3A 1N61B 3CCEH 2TPTA 2E3TA 1QPOA 1S72H 3CCSH 2QIEA 4YYYA 1M90J 1M1KJ 1K9MJ 4MUOA 1K73J 2PA2A 2OMDA 5HL7J 3L4PA 5AYYA 1RM6A 4GA4A 5GAEN 1V8GA 4M0RA 3NVWC 2B7PA 4HKMA 4AP8A 3C2RA 1O4UA 3GNNA 1KHDA 4IOCJ 3CCQH 1YJNH 4OWVA 1JROB 1YTKA 1YIJH 3C2FA 4X5AA 1YHQH 5HULA 3CCMH 1JRPB 4EADA 4KWWA 3AN1A 3CCLH 1YTEA 3I55H 1VQ5H 1NVJA 4WCEJ 4C7ZA 1QPNA 3CC2H 3CXCH 1VQMH 5MPOC 3WO0A 1NJIJ 5H1SO 5HUOA 3C2OA 2DSJA 1N62B 4I9AA 4YEKA 3EUB4 4GA5A 1RRZA 3G4SH 4N93A 3TWPA 2ZJPJ 3CPWH 4LHMA 2W54B 4WF9J 1BRWA 4GTNA 1VQ4H 4OWNA 3NVYC 3WNZA 1KD1J 5BNEA 2W55B 1VDVA 5MLCO 3G6EH 1ZYKA 1FMAE 3CCJH 4ZOFA 1NVIE 3AMZA 4ZOHA 3VMMA 1VQ7H 1VQNH 4US8A 3PAJA 3G71H 3CMAH 4GA6A 5EP8A 5DM7J 3ETRC 1Q82J 1OTPA 1DGJA 4EAFA 4C80A 5BYTA 4IOAJ 3AM9A 2WK6A 2QEXH 3QQSA
chains in the Genus database with same CATH topology
4ZOJA 4X46A 3QR9A 4GIUA 4OWOA 4OWUA 5BO2A 3H5QA 1ZVWA 5EY3A 1ZXYA 1GXBA 3R6CA 5C1RA 4X59A 1AZYA 2GVQA 2BPQA 4OWQA 4X5EA 4X58A 5C7SA 4YI7A 1O17A 1VQUA 4ZOKA 4OWMA 3GBRA 4OWSA 5C2LA 2ELCA 2WK5A 3QSAA 4N5VA 3QS8A 1UOUA 4ZTVA 1KGZA 3UU1A 4IJ1A 4X5BA 4N8QA 4X5CA 4XR5A 3R88A 4X5DA 4GKMA 2J0FA 5BO3A 2TPTA 4YYYA 4MUOA 4GA4A 1V8GA 4M0RA 4HKMA 1KHDA 4OWVA 4X5AA 4EADA 2DSJA 4YEKA 4GA5A 4N93A 3TWPA 4LHMA 1BRWA 4GTNA 4OWNA 5BNEA 1ZYKA 4ZOFA 5EP8A 4GA6A 1OTPA 4EAFA 5BYTA 2WK6A 3QQSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZOJ A;  4X46 A;  3QR9 A;  4GIU A;  4OWO A;  4OWU A;  5BO2 A;  3H5Q A;  1ZVW A;  5EY3 A;  1ZXY A;  1GXB A;  3R6C A;  5C1R A;  4X59 A;  1AZY A;  2GVQ A;  2BPQ A;  4OWQ A;  4X5E A;  4X58 A;  5C7S A;  4YI7 A;  1O17 A;  1VQU A;  4ZOK A;  4OWM A;  3GBR A;  4OWS A;  5C2L A;  2ELC A;  2WK5 A;  3QSA A;  4N5V A;  3QS8 A;  1UOU A;  4ZTV A;  1KGZ A;  3UU1 A;  4IJ1 A;  4X5B A;  4N8Q A;  4X5C A;  4XR5 A;  3R88 A;  4X5D A;  4GKM A;  2J0F A;  5BO3 A;  2TPT A;  4YYY A;  4MUO A;  4GA4 A;  1V8G A;  4M0R A;  4HKM A;  1KHD A;  4OWV A;  4X5A A;  4EAD A;  2DSJ A;  4YEK A;  4GA5 A;  4N93 A;  3TWP A;  4LHM A;  1BRW A;  4GTN A;  4OWN A;  5BNE A;  1ZYK A;  4ZOF A;  5EP8 A;  4GA6 A;  1OTP A;  4EAF A;  5BYT A;  2WK6 A;  3QQS A; 
#chains in the Genus database with same CATH topology
 3DLL J;  3BII E;  4ZOJ A;  4X46 A;  4C7Y A;  1N8R J;  3FC4 A;  1VQ6 H;  5GAG N;  1VQP H;  1KQS H;  3QR9 A;  4GIU A;  4OWO A;  4OWU A;  5BO2 A;  2Q5W E;  3H5Q A;  1ZVW A;  5EY3 A;  2W3S B;  3B9J C;  5GAD N;  1ZXY A;  3CCR H;  1QVF H;  1N60 B;  3SR6 C;  1Q81 J;  1FO4 A;  1JJ2 H;  1GXB A;  2B7N A;  1FFV B;  4US9 A;  3R6C A;  4WFA J;  3PIP J;  1V97 A;  1Y69 K;  3NRZ C;  2I14 A;  5C1R A;  3C2V A;  4X59 A;  3NVZ C;  3CCV H;  1Q7Y J;  1YTD A;  4WFN J;  1AZY A;  2W3R B;  1YJ9 H;  2GVQ A;  2BPQ A;  3FAH A;  1QPR A;  5AN9 F;  2ZJR J;  1VLB A;  1FIQ C;  4OWQ A;  4X5E A;  4X58 A;  1X1O A;  3L0G A;  1VQ9 H;  5C7S A;  4YI7 A;  1ZXI B;  5GAH N;  1O17 A;  1VQO H;  2QA4 H;  1YIT H;  3J7Z M;  1W2B H;  3CC7 H;  1QVG H;  3PIO J;  1QPQ A;  4U67 J;  1SIJ A;  1YI2 H;  2B7Q A;  1VQU A;  4ZOK A;  2WP4 A;  4OWM A;  3C2E A;  4UY8 M;  3OW2 H;  1K8A J;  3CD6 H;  2ZJQ J;  5DM6 J;  1VQ8 H;  3GBR A;  4OWS A;  5C2L A;  2I1O A;  3WO1 A;  3RPF A;  1N5X A;  2ELC A;  4F3F C;  2OTL H;  5JVG J;  4USA A;  1QAP A;  1YJW H;  5JVH J;  3CME H;  3CCU H;  5HUP A;  5AYZ A;  2WK5 A;  3CC4 H;  1WYG A;  3QSA A;  3CF5 J;  4KWV A;  4N5V A;  3QS8 A;  1UOU A;  4ZTV A;  1KGZ A;  3NS1 C;  3UU1 A;  1SB3 A;  5AYX A;  4WFB J;  4IJ1 A;  1N63 B;  4X5B A;  1FM0 E;  4N8Q A;  4IO9 J;  2OTJ H;  1N5W B;  1VQK H;  4X5C A;  3I56 H;  3NVV C;  1RF8 B;  4XR5 A;  3R88 A;  1Q86 J;  4X5D A;  1VQL H;  3TQV A;  4GKM A;  1KC8 J;  1WKI A;  2JBM A;  2J0F A;  1FFU B;  5BO3 A;  1N61 B;  3CCE H;  2TPT A;  2E3T A;  1QPO A;  1S72 H;  3CCS H;  2QIE A;  4YYY A;  1M90 J;  1M1K J;  1K9M J;  4MUO A;  1K73 J;  2PA2 A;  2OMD A;  5HL7 J;  3L4P A;  5AYY A;  1RM6 A;  4GA4 A;  5GAE N;  1V8G A;  4M0R A;  3NVW C;  2B7P A;  4HKM A;  4AP8 A;  3C2R A;  1O4U A;  3GNN A;  1KHD A;  4IOC J;  3CCQ H;  1YJN H;  4OWV A;  1JRO B;  1YTK A;  1YIJ H;  3C2F A;  4X5A A;  1YHQ H;  5HUL A;  3CCM H;  1JRP B;  4EAD A;  4KWW A;  3AN1 A;  3CCL H;  1YTE A;  3I55 H;  1VQ5 H;  1NVJ A;  4WCE J;  4C7Z A;  1QPN A;  3CC2 H;  3CXC H;  1VQM H;  5MPO C;  3WO0 A;  1NJI J;  5H1S O;  5HUO A;  3C2O A;  2DSJ A;  1N62 B;  4I9A A;  4YEK A;  3EUB 4;  4GA5 A;  1RRZ A;  3G4S H;  4N93 A;  3TWP A;  2ZJP J;  3CPW H;  4LHM A;  2W54 B;  4WF9 J;  1BRW A;  4GTN A;  1VQ4 H;  4OWN A;  3NVY C;  3WNZ A;  1KD1 J;  5BNE A;  2W55 B;  1VDV A;  5MLC O;  3G6E H;  1ZYK A;  1FMA E;  3CCJ H;  4ZOF A;  1NVI E;  3AMZ A;  4ZOH A;  3VMM A;  1VQ7 H;  1VQN H;  4US8 A;  3PAJ A;  3G71 H;  3CMA H;  4GA6 A;  5EP8 A;  5DM7 J;  3ETR C;  1Q82 J;  1OTP A;  1DGJ A;  4EAF A;  4C80 A;  5BYT A;  4IOA J;  3AM9 A;  2WK6 A;  2QEX H;  3QQS A; 
#chains in the Genus database with same CATH homology
 4ZOJ A;  4X46 A;  3QR9 A;  4GIU A;  4OWO A;  4OWU A;  5BO2 A;  3H5Q A;  1ZVW A;  5EY3 A;  1ZXY A;  1GXB A;  3R6C A;  5C1R A;  4X59 A;  1AZY A;  2GVQ A;  2BPQ A;  4OWQ A;  4X5E A;  4X58 A;  5C7S A;  4YI7 A;  1O17 A;  1VQU A;  4ZOK A;  4OWM A;  3GBR A;  4OWS A;  5C2L A;  2ELC A;  2WK5 A;  3QSA A;  4N5V A;  3QS8 A;  1UOU A;  4ZTV A;  1KGZ A;  3UU1 A;  4IJ1 A;  4X5B A;  4N8Q A;  4X5C A;  4XR5 A;  3R88 A;  4X5D A;  4GKM A;  2J0F A;  5BO3 A;  2TPT A;  4YYY A;  4MUO A;  4GA4 A;  1V8G A;  4M0R A;  4HKM A;  1KHD A;  4OWV A;  4X5A A;  4EAD A;  2DSJ A;  4YEK A;  4GA5 A;  4N93 A;  3TWP A;  4LHM A;  1BRW A;  4GTN A;  4OWN A;  5BNE A;  1ZYK A;  4ZOF A;  5EP8 A;  4GA6 A;  1OTP A;  4EAF A;  5BYT A;  2WK6 A;  3QQS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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