4Y0CA

The structure of arabidopsis clpt2
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
166
structure length
158
Chain Sequence
SLPTANKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELESFASESGFLDE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Clp protease-related protein At4g12060, chloroplastic
publication title Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 52
structure length 158
sequence length 166
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 4y0cA00
4HH5A 2Y1QA 1KSFX 4HH6A 1QVRA 1K6KA 3ZRJA 2Y1RA 4UQWA 1R6QA 1R6BX 5HBNA 4IRFA 3FESA 4IODA 3WDBA 3WDCA 1LZWB 3ZRIA 3WDDA 1MBVA 1R6CX 3WDEA 1KHYA 1MBUA 1R6OA 3PXGA 1MBXA 4Y0CA 4P15A 4Y0BA 5GUIA 1MG9B 3FH2A 2K77A
chains in the Genus database with same CATH superfamily
4HH5A 2Y1QA 1KSFX 4HH6A 1QVRA 1K6KA 3ZRJA 2Y1RA 4UQWA 1R6QA 1R6BX 5HBNA 4IRFA 3FESA 4IODA 3WDBA 3WDCA 1LZWB 3ZRIA 3WDDA 1MBVA 1R6CX 3WDEA 1KHYA 1MBUA 1R6OA 3PXGA 1MBXA 4Y0CA 4P15A 4Y0BA 5GUIA 1MG9B 3FH2A 2K77A
chains in the Genus database with same CATH topology
4HH5A 2Y1QA 1KSFX 4HH6A 1QVRA 1K6KA 3ZRJA 2Y1RA 4UQWA 1R6QA 1R6BX 5HBNA 4IRFA 3FESA 4IODA 3WDBA 3WDCA 1LZWB 3ZRIA 3WDDA 1MBVA 1R6CX 3WDEA 1KHYA 1MBUA 1R6OA 3PXGA 1MBXA 4Y0CA 4P15A 4Y0BA 5GUIA 1MG9B 3FH2A 2K77A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HH5 A;  2Y1Q A;  1KSF X;  4HH6 A;  1QVR A;  1K6K A;  3ZRJ A;  2Y1R A;  4UQW A;  1R6Q A;  1R6B X;  5HBN A;  4IRF A;  3FES A;  4IOD A;  3WDB A;  3WDC A;  1LZW B;  3ZRI A;  3WDD A;  1MBV A;  1R6C X;  3WDE A;  1KHY A;  1MBU A;  1R6O A;  3PXG A;  1MBX A;  4Y0C A;  4P15 A;  4Y0B A;  5GUI A;  1MG9 B;  3FH2 A;  2K77 A; 
#chains in the Genus database with same CATH topology
 4HH5 A;  2Y1Q A;  1KSF X;  4HH6 A;  1QVR A;  1K6K A;  3ZRJ A;  2Y1R A;  4UQW A;  1R6Q A;  1R6B X;  5HBN A;  4IRF A;  3FES A;  4IOD A;  3WDB A;  3WDC A;  1LZW B;  3ZRI A;  3WDD A;  1MBV A;  1R6C X;  3WDE A;  1KHY A;  1MBU A;  1R6O A;  3PXG A;  1MBX A;  4Y0C A;  4P15 A;  4Y0B A;  5GUI A;  1MG9 B;  3FH2 A;  2K77 A; 
#chains in the Genus database with same CATH homology
 4HH5 A;  2Y1Q A;  1KSF X;  4HH6 A;  1QVR A;  1K6K A;  3ZRJ A;  2Y1R A;  4UQW A;  1R6Q A;  1R6B X;  5HBN A;  4IRF A;  3FES A;  4IOD A;  3WDB A;  3WDC A;  1LZW B;  3ZRI A;  3WDD A;  1MBV A;  1R6C X;  3WDE A;  1KHY A;  1MBU A;  1R6O A;  3PXG A;  1MBX A;  4Y0C A;  4P15 A;  4Y0B A;  5GUI A;  1MG9 B;  3FH2 A;  2K77 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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