4Y5RC

Crystal structure of a t67a maug/pre-methylamine dehydrogenase complex
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Methylamine utilization protein MauG
publication title A T67A mutation in the proximal pocket of the high-spin heme of MauG stabilizes formation of a mixed-valent Fe(II)/Fe(III) state and enhances charge resonance stabilization of the bis-Fe(IV) state.
pubmed doi rcsb
source organism Paracoccus denitrificans (strain pd 1222)
total genus 29
structure length 124
sequence length 125
chains with identical sequence E
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2015-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 4y5rC00
4FA1C 2OK4D 2AGZD 2HXCD 4FA9C 3PXWC 2HKMD 2HKRD 2OK6D 2IURD 2J56L 4FB1C 1MAEL 2IUPD 3SJLC 4FA5C 2Q7QD 3ORVC 3RLMC 1MDAL 2I0RD 2H3XB 2I0SD 2H47B 1MAFL 2MADL 3C75L 4FA4C 1MG3B 3PXTC 4FAVC 2AH0D 2BBKL 2AGXD 1MG2B 2HJBD 3SXTC 2AGYD 4FANC 2AGWD 2J57K 4O1QC 2I0TD 3SLEC 3SVWC 4K3IC 3RN0C 4L3HC 3L4OC 3RMZC 3SWSC 2IAAB 2J55L 2MTAL 4Y5RC 2AH1D 4L3GC 3RN1C 2OJYD 2GC4B 2IUQD 2OIZD 3L4MC 3PXSC 4L1QC 2GC7B 2IUVD 2AGLD 2HJ4D
chains in the Genus database with same CATH superfamily
4FA1C 2OK4D 2AGZD 2HXCD 4FA9C 3PXWC 2HKMD 2HKRD 2OK6D 2IURD 2J56L 4FB1C 1MAEL 2IUPD 3SJLC 4FA5C 2Q7QD 3ORVC 3RLMC 1MDAL 2I0RD 2H3XB 2I0SD 2H47B 1MAFL 2MADL 3C75L 4FA4C 1MG3B 3PXTC 4FAVC 2AH0D 2BBKL 2AGXD 1MG2B 2HJBD 3SXTC 2AGYD 4FANC 2AGWD 2J57K 4O1QC 2I0TD 3SLEC 3SVWC 4K3IC 3RN0C 4L3HC 3L4OC 3RMZC 3SWSC 2IAAB 2J55L 2MTAL 4Y5RC 2AH1D 4L3GC 3RN1C 2OJYD 2GC4B 2IUQD 2OIZD 3L4MC 3PXSC 4L1QC 2GC7B 2IUVD 2AGLD 2HJ4D
chains in the Genus database with same CATH topology
4FA1C 2OK4D 2AGZD 2HXCD 4FA9C 3PXWC 2HKMD 2HKRD 2OK6D 2IURD 2J56L 4FB1C 1MAEL 2IUPD 3SJLC 4FA5C 2Q7QD 3ORVC 3RLMC 1MDAL 2I0RD 2H3XB 2I0SD 2H47B 1MAFL 2MADL 3C75L 4FA4C 1MG3B 3PXTC 4FAVC 2AH0D 2BBKL 2AGXD 1MG2B 2HJBD 3SXTC 2AGYD 4FANC 2AGWD 2J57K 4O1QC 2I0TD 3SLEC 3SVWC 4K3IC 3RN0C 4L3HC 3L4OC 3RMZC 3SWSC 2IAAB 2J55L 2MTAL 4Y5RC 2AH1D 4L3GC 3RN1C 2OJYD 2GC4B 2IUQD 2OIZD 3L4MC 3PXSC 4L1QC 2GC7B 2IUVD 2AGLD 2HJ4D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FA1 C;  2OK4 D;  2AGZ D;  2HXC D;  4FA9 C;  3PXW C;  2HKM D;  2HKR D;  2OK6 D;  2IUR D;  2J56 L;  4FB1 C;  1MAE L;  2IUP D;  3SJL C;  4FA5 C;  2Q7Q D;  3ORV C;  3RLM C;  1MDA L;  2I0R D;  2H3X B;  2I0S D;  2H47 B;  1MAF L;  2MAD L;  3C75 L;  4FA4 C;  1MG3 B;  3PXT C;  4FAV C;  2AH0 D;  2BBK L;  2AGX D;  1MG2 B;  2HJB D;  3SXT C;  2AGY D;  4FAN C;  2AGW D;  2J57 K;  4O1Q C;  2I0T D;  3SLE C;  3SVW C;  4K3I C;  3RN0 C;  4L3H C;  3L4O C;  3RMZ C;  3SWS C;  2IAA B;  2J55 L;  2MTA L;  4Y5R C;  2AH1 D;  4L3G C;  3RN1 C;  2OJY D;  2GC4 B;  2IUQ D;  2OIZ D;  3L4M C;  3PXS C;  4L1Q C;  2GC7 B;  2IUV D;  2AGL D;  2HJ4 D; 
#chains in the Genus database with same CATH topology
 4FA1 C;  2OK4 D;  2AGZ D;  2HXC D;  4FA9 C;  3PXW C;  2HKM D;  2HKR D;  2OK6 D;  2IUR D;  2J56 L;  4FB1 C;  1MAE L;  2IUP D;  3SJL C;  4FA5 C;  2Q7Q D;  3ORV C;  3RLM C;  1MDA L;  2I0R D;  2H3X B;  2I0S D;  2H47 B;  1MAF L;  2MAD L;  3C75 L;  4FA4 C;  1MG3 B;  3PXT C;  4FAV C;  2AH0 D;  2BBK L;  2AGX D;  1MG2 B;  2HJB D;  3SXT C;  2AGY D;  4FAN C;  2AGW D;  2J57 K;  4O1Q C;  2I0T D;  3SLE C;  3SVW C;  4K3I C;  3RN0 C;  4L3H C;  3L4O C;  3RMZ C;  3SWS C;  2IAA B;  2J55 L;  2MTA L;  4Y5R C;  2AH1 D;  4L3G C;  3RN1 C;  2OJY D;  2GC4 B;  2IUQ D;  2OIZ D;  3L4M C;  3PXS C;  4L1Q C;  2GC7 B;  2IUV D;  2AGL D;  2HJ4 D; 
#chains in the Genus database with same CATH homology
 4FA1 C;  2OK4 D;  2AGZ D;  2HXC D;  4FA9 C;  3PXW C;  2HKM D;  2HKR D;  2OK6 D;  2IUR D;  2J56 L;  4FB1 C;  1MAE L;  2IUP D;  3SJL C;  4FA5 C;  2Q7Q D;  3ORV C;  3RLM C;  1MDA L;  2I0R D;  2H3X B;  2I0S D;  2H47 B;  1MAF L;  2MAD L;  3C75 L;  4FA4 C;  1MG3 B;  3PXT C;  4FAV C;  2AH0 D;  2BBK L;  2AGX D;  1MG2 B;  2HJB D;  3SXT C;  2AGY D;  4FAN C;  2AGW D;  2J57 K;  4O1Q C;  2I0T D;  3SLE C;  3SVW C;  4K3I C;  3RN0 C;  4L3H C;  3L4O C;  3RMZ C;  3SWS C;  2IAA B;  2J55 L;  2MTA L;  4Y5R C;  2AH1 D;  4L3G C;  3RN1 C;  2OJY D;  2GC4 B;  2IUQ D;  2OIZ D;  3L4M C;  3PXS C;  4L1Q C;  2GC7 B;  2IUV D;  2AGL D;  2HJ4 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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