4YBOA

Structure of citrate synthase from the thermoacidophilic euryarchaeon thermolasma acidophilum
Total Genus 134
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
395
structure length
395
Chain Sequence
EISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQELRKYKETVQKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAASETKFKWNKDTDRDVAAEMIGRMSAITVNVYRHIMNMPAELPKPSDSYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFDEIKDPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHFIEYVEEQQRLIRPRAVYVGPAERKYVPIAERKVDKLAAALEHHHHHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Citrate synthase
publication title An active site-tail interaction in the structure of hexahistidine-tagged Thermoplasma acidophilum citrate synthase.
pubmed doi rcsb
source organism Thermoplasma acidophilum (strain atcc 25905 / dsm 1728 / jcm 9062 / nbrc 15155 /
total genus 134
structure length 395
sequence length 395
chains with identical sequence B, C, D
ec nomenclature ec 2.3.3.16: Citrate synthase (unknown stereospecificity).
pdb deposition date 2015-02-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00285 Citrate_synt Citrate synthase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.230.10 Mainly Alpha Orthogonal Bundle Cytochrome p450-Terp; domain 2 Cytochrome P450-Terp, domain 2 4yboA02
1.10.580.10 Mainly Alpha Orthogonal Bundle Citrate Synthase; domain 1 Citrate Synthase, domain 1 4yboA01
1NXEA 2C6XA 1VGPA 4JADA 2CSCA 1AJ8A 1CSCA 4JAEA 4YBOA 1OWCA 2H12A 6CSCA 1CSSA 1CSIA 2R9EA 3TQGA 2P2WA 1VGMA 4XGHA 2IFCA 1CSHA 4JAGA 4G6BA 1IOMA 4E6YA 2CTSA 1AL6A 6CTSA 1IXEA 1O7XA 1CSRA 4JAFA 5CSCA 3ENJA 5CTSA 4TVMA 3HWKA 1NXGA 2IBPA 1CTSA 3MSUA 4CSCA 4CTSA 2R26A 1A59A 1OWBA 5CSCB 3O8JA 3CSCA 1AMZA
chains in the Genus database with same CATH superfamily
1NXEA 2C6XA 1VGPA 4JADA 2CSCA 1AJ8A 1CSCA 4JAEA 4YBOA 1OWCA 2H12A 6CSCA 1CSSA 1CSIA 2R9EA 3TQGA 2P2WA 1VGMA 4XGHA 2IFCA 1CSHA 4JAGA 4G6BA 1IOMA 4E6YA 2CTSA 1AL6A 6CTSA 1IXEA 1O7XA 1CSRA 4JAFA 4TVMA 3ENJA 5CSCA 5CTSA 3HWKA 1NXGA 2IBPA 1CTSA 3MSUA 4CSCA 4CTSA 2R26A 1A59A 1OWBA 5CSCB 3O8JA 3CSCA 1AMZA
chains in the Genus database with same CATH topology
1NXEA 2C6XA 1VGPA 4JADA 2CSCA 1AJ8A 1CSCA 4JAEA 4YBOA 1OWCA 2H12A 6CSCA 1CSSA 1CSIA 2R9EA 3TQGA 2P2WA 1VGMA 4XGHA 2IFCA 1CSHA 4JAGA 4G6BA 1IOMA 4E6YA 2CTSA 1AL6A 6CTSA 1IXEA 1O7XA 1CSRA 4JAFA 5CSCA 3ENJA 5CTSA 4TVMA 3HWKA 1NXGA 2IBPA 1CTSA 3MSUA 4CSCA 4CTSA 2R26A 1A59A 1OWBA 5CSCB 3O8JA 3CSCA 1AMZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NXE A;  2C6X A;  1VGP A;  4JAD A;  2CSC A;  1AJ8 A;  1CSC A;  4JAE A;  4YBO A;  1OWC A;  2H12 A;  6CSC A;  1CSS A;  1CSI A;  2R9E A;  3TQG A;  2P2W A;  1VGM A;  4XGH A;  2IFC A;  1CSH A;  4JAG A;  4G6B A;  1IOM A;  4E6Y A;  2CTS A;  1AL6 A;  6CTS A;  1IXE A;  1O7X A;  1CSR A;  4JAF A;  5CSC A;  3ENJ A;  5CTS A;  4TVM A;  3HWK A;  1NXG A;  2IBP A;  1CTS A;  3MSU A;  4CSC A;  4CTS A;  2R26 A;  1A59 A;  1OWB A;  5CSC B;  3O8J A;  3CSC A;  1AMZ A; 
#chains in the Genus database with same CATH topology
 1NXE A;  2C6X A;  1VGP A;  4JAD A;  2CSC A;  1AJ8 A;  1CSC A;  4JAE A;  4YBO A;  1OWC A;  2H12 A;  6CSC A;  1CSS A;  1CSI A;  2R9E A;  3TQG A;  2P2W A;  1VGM A;  4XGH A;  2IFC A;  1CSH A;  4JAG A;  4G6B A;  1IOM A;  4E6Y A;  2CTS A;  1AL6 A;  6CTS A;  1IXE A;  1O7X A;  1CSR A;  4JAF A;  4TVM A;  3ENJ A;  5CSC A;  5CTS A;  3HWK A;  1NXG A;  2IBP A;  1CTS A;  3MSU A;  4CSC A;  4CTS A;  2R26 A;  1A59 A;  1OWB A;  5CSC B;  3O8J A;  3CSC A;  1AMZ A; 
#chains in the Genus database with same CATH homology
 1NXE A;  2C6X A;  1VGP A;  4JAD A;  2CSC A;  1AJ8 A;  1CSC A;  4JAE A;  4YBO A;  1OWC A;  2H12 A;  6CSC A;  1CSS A;  1CSI A;  2R9E A;  3TQG A;  2P2W A;  1VGM A;  4XGH A;  2IFC A;  1CSH A;  4JAG A;  4G6B A;  1IOM A;  4E6Y A;  2CTS A;  1AL6 A;  6CTS A;  1IXE A;  1O7X A;  1CSR A;  4JAF A;  5CSC A;  3ENJ A;  5CTS A;  4TVM A;  3HWK A;  1NXG A;  2IBP A;  1CTS A;  3MSU A;  4CSC A;  4CTS A;  2R26 A;  1A59 A;  1OWB A;  5CSC B;  3O8J A;  3CSC A;  1AMZ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...