4YEHA

Crystal structure of mg2+ ion containing hemopexin fold from kabuli chana (chickpea white) at 2.45a resolution reveals a structural basis of metal ion transport
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
224
structure length
224
Chain Sequence
GYINAAFRSSRNNEAYLFINDKYVLLDYAPGTSNDKVLYGPSFVRDGYKSLAKTIFGTYGIDCSFDTEYNEAFIFYENFCARIDYAPHSDKDKIISGPKKIADMFPFFKGTVFENGIDAAFRSTKGKEVYLFKGDKYARIDYLTNRLVQNIKSISDGFPCLRGTIFEAGMDSAFASHKTNEAYLFKGEYYARINFTPGSTNDIMGGVKKTLDYWPSLRGIIPLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords Lectin
publication title Crystal Structure of Mg(2+) Containing Hemopexin-Fold Protein from Kabuli Chana (Chickpea-White, CW-25) at 2.45 angstrom Resolution Reveals Its Metal Ion Transport Property
pubmed doi rcsb
total genus 45
structure length 224
sequence length 224
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00045 Hemopexin Hemopexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 4yehA00
1SU3A 3S18A 2JXYA 1GENA 1CK7A 4OEIA 1GXDA 4FU4A 3C7XA 1FBLA 1QJSA 4FVLA 2MQSA 1ITVA 1PEXA 1QHUA 3LP9A 4G0DA 3OYOA 4LL2A 4YEHA 1RTGA 4HSDA 4RT6B 2CLTA 4AUOA 3V6NA 3BA0A 1HXNA
chains in the Genus database with same CATH superfamily
1SU3A 3S18A 2JXYA 1GENA 1CK7A 4OEIA 1GXDA 4FU4A 3C7XA 1FBLA 1QJSA 4FVLA 2MQSA 1ITVA 1PEXA 1QHUA 3LP9A 4G0DA 3OYOA 4LL2A 4YEHA 1RTGA 4HSDA 4RT6B 2CLTA 4AUOA 3V6NA 3BA0A 1HXNA
chains in the Genus database with same CATH topology
1SU3A 3S18A 2JXYA 1GENA 1CK7A 4OEIA 1GXDA 4FU4A 3C7XA 1FBLA 1QJSA 4FVLA 2MQSA 1ITVA 1PEXA 1QHUA 3LP9A 4G0DA 3OYOA 4LL2A 4YEHA 1RTGA 4HSDA 4RT6B 2CLTA 4AUOA 3V6NA 3BA0A 1HXNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SU3 A;  3S18 A;  2JXY A;  1GEN A;  1CK7 A;  4OEI A;  1GXD A;  4FU4 A;  3C7X A;  1FBL A;  1QJS A;  4FVL A;  2MQS A;  1ITV A;  1PEX A;  1QHU A;  3LP9 A;  4G0D A;  3OYO A;  4LL2 A;  4YEH A;  1RTG A;  4HSD A;  4RT6 B;  2CLT A;  4AUO A;  3V6N A;  3BA0 A;  1HXN A; 
#chains in the Genus database with same CATH topology
 1SU3 A;  3S18 A;  2JXY A;  1GEN A;  1CK7 A;  4OEI A;  1GXD A;  4FU4 A;  3C7X A;  1FBL A;  1QJS A;  4FVL A;  2MQS A;  1ITV A;  1PEX A;  1QHU A;  3LP9 A;  4G0D A;  3OYO A;  4LL2 A;  4YEH A;  1RTG A;  4HSD A;  4RT6 B;  2CLT A;  4AUO A;  3V6N A;  3BA0 A;  1HXN A; 
#chains in the Genus database with same CATH homology
 1SU3 A;  3S18 A;  2JXY A;  1GEN A;  1CK7 A;  4OEI A;  1GXD A;  4FU4 A;  3C7X A;  1FBL A;  1QJS A;  4FVL A;  2MQS A;  1ITV A;  1PEX A;  1QHU A;  3LP9 A;  4G0D A;  3OYO A;  4LL2 A;  4YEH A;  1RTG A;  4HSD A;  4RT6 B;  2CLT A;  4AUO A;  3V6N A;  3BA0 A;  1HXN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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