4YFAA

Structure of n-acylhomoserine lactone acylase macq in complex with decanoic acid
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
167
structure length
167
Chain Sequence
TYSAEIRRTTMGVPHIKAGNWGSAGYGFGYVQAQDNLCTMADSFLTYRGERSRHLGGSAQLVYNSTLGRPRNIDSDFFHRHVISDEAVDRTMAAQPAKLLQMVEGFAAGYNRYVREAKAGGSAHAACRSEAWVQPITARDVWRRIYAANLAGGYSNFAEAIANAQPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Protein related to penicillin acylase
publication title Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides
pubmed doi rcsb
source organism Acidovorax sp. mr-s7
total genus 56
structure length 167
sequence length 167
chains with identical sequence D, G, J
ec nomenclature
pdb deposition date 2015-02-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 4yfaA00
2WYDA 1K5QA 4K2GA 1JW0A 1PNKA 1FXHA 2WYBA 1OR0A 3K3WA 1H2GA 4WKUA 1K5SA 3ML0A 1E3AA 4WKTA 2AE5A 3JTRA 2WYEA 2AE3A 1AI4A 4E57A 4HSTA 4M1JA 1JVZA 1PNLA 4PEMA 1AI7A 1JX9A 1FM2A 1KEHA 1AJPA 1KECA 4YFBA 4BTHA 1GK1A 2ADVA 4E56A 4YF9A 2AE4A 1CP9A 1AI6A 1PNMA 3JTQA 2WYCA 1GHDA 4K2FA 4WKSA 1GM7A 4WKVA 1AJQA 4HSRA 1K7DA 3L91A 3S8RA 1GKFA 1FXVA 1AI5A 1GK9A 3SRCA 3SRBA 3SRAA 3L94A 1AJNA 1GM8A 1GM9A 1GK0A 4YFAA 4E55A 4PELA
chains in the Genus database with same CATH superfamily
2WYDA 1K5QA 4K2GA 1JW0A 1PNKA 1FXHA 2WYBA 1OR0A 3K3WA 1H2GA 4WKUA 1K5SA 3ML0A 1E3AA 4WKTA 2AE5A 3JTRA 3FGRA 2WYEA 2AE3A 1AI4A 4E57A 4HSTA 4M1JA 1JVZA 3FGTA 1PNLA 4PEMA 1AI7A 1JX9A 1FM2A 1KEHA 1AJPA 1KECA 4YFBA 4BTHA 1GK1A 2ADVA 4E56A 4YF9A 2AE4A 1CP9A 1AI6A 1PNMA 3JTQA 2WYCA 1GHDA 4K2FA 4WKSA 1GM7A 4BWCA 4WKVA 1AJQA 4HSRA 1K7DA 3L91A 3S8RA 1GKFA 1FXVA 1AI5A 1GK9A 3SRCA 3SRBA 3SRAA 3L94A 1AJNA 1GM8A 1GM9A 1GK0A 4YFAA 4E55A 4PELA
chains in the Genus database with same CATH topology
2WYDA 1K5QA 4K2GA 1JW0A 1PNKA 1FXHA 2WYBA 1OR0A 3K3WA 1H2GA 4WKUA 1K5SA 3ML0A 1E3AA 4WKTA 2AE5A 3JTRA 2WYEA 2AE3A 1AI4A 4E57A 4HSTA 4M1JA 1JVZA 1PNLA 4PEMA 1AI7A 1JX9A 1FM2A 1KEHA 1AJPA 1KECA 4YFBA 4BTHA 1GK1A 2ADVA 4E56A 4YF9A 2AE4A 1CP9A 1AI6A 1PNMA 3JTQA 2WYCA 1GHDA 4K2FA 4WKSA 1GM7A 4WKVA 1AJQA 4HSRA 1K7DA 3L91A 3S8RA 1GKFA 1FXVA 1AI5A 1GK9A 3SRCA 3SRBA 3SRAA 3L94A 1AJNA 1GM8A 1GM9A 1GK0A 4YFAA 4E55A 4PELA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WYD A;  1K5Q A;  4K2G A;  1JW0 A;  1PNK A;  1FXH A;  2WYB A;  1OR0 A;  3K3W A;  1H2G A;  4WKU A;  1K5S A;  3ML0 A;  1E3A A;  4WKT A;  2AE5 A;  3JTR A;  2WYE A;  2AE3 A;  1AI4 A;  4E57 A;  4HST A;  4M1J A;  1JVZ A;  1PNL A;  4PEM A;  1AI7 A;  1JX9 A;  1FM2 A;  1KEH A;  1AJP A;  1KEC A;  4YFB A;  4BTH A;  1GK1 A;  2ADV A;  4E56 A;  4YF9 A;  2AE4 A;  1CP9 A;  1AI6 A;  1PNM A;  3JTQ A;  2WYC A;  1GHD A;  4K2F A;  4WKS A;  1GM7 A;  4WKV A;  1AJQ A;  4HSR A;  1K7D A;  3L91 A;  3S8R A;  1GKF A;  1FXV A;  1AI5 A;  1GK9 A;  3SRC A;  3SRB A;  3SRA A;  3L94 A;  1AJN A;  1GM8 A;  1GM9 A;  1GK0 A;  4YFA A;  4E55 A;  4PEL A; 
#chains in the Genus database with same CATH topology
 2WYD A;  1K5Q A;  4K2G A;  1JW0 A;  1PNK A;  1FXH A;  2WYB A;  1OR0 A;  3K3W A;  1H2G A;  4WKU A;  1K5S A;  3ML0 A;  1E3A A;  4WKT A;  2AE5 A;  3JTR A;  3FGR A;  2WYE A;  2AE3 A;  1AI4 A;  4E57 A;  4HST A;  4M1J A;  1JVZ A;  3FGT A;  1PNL A;  4PEM A;  1AI7 A;  1JX9 A;  1FM2 A;  1KEH A;  1AJP A;  1KEC A;  4YFB A;  4BTH A;  1GK1 A;  2ADV A;  4E56 A;  4YF9 A;  2AE4 A;  1CP9 A;  1AI6 A;  1PNM A;  3JTQ A;  2WYC A;  1GHD A;  4K2F A;  4WKS A;  1GM7 A;  4BWC A;  4WKV A;  1AJQ A;  4HSR A;  1K7D A;  3L91 A;  3S8R A;  1GKF A;  1FXV A;  1AI5 A;  1GK9 A;  3SRC A;  3SRB A;  3SRA A;  3L94 A;  1AJN A;  1GM8 A;  1GM9 A;  1GK0 A;  4YFA A;  4E55 A;  4PEL A; 
#chains in the Genus database with same CATH homology
 2WYD A;  1K5Q A;  4K2G A;  1JW0 A;  1PNK A;  1FXH A;  2WYB A;  1OR0 A;  3K3W A;  1H2G A;  4WKU A;  1K5S A;  3ML0 A;  1E3A A;  4WKT A;  2AE5 A;  3JTR A;  2WYE A;  2AE3 A;  1AI4 A;  4E57 A;  4HST A;  4M1J A;  1JVZ A;  1PNL A;  4PEM A;  1AI7 A;  1JX9 A;  1FM2 A;  1KEH A;  1AJP A;  1KEC A;  4YFB A;  4BTH A;  1GK1 A;  2ADV A;  4E56 A;  4YF9 A;  2AE4 A;  1CP9 A;  1AI6 A;  1PNM A;  3JTQ A;  2WYC A;  1GHD A;  4K2F A;  4WKS A;  1GM7 A;  4WKV A;  1AJQ A;  4HSR A;  1K7D A;  3L91 A;  3S8R A;  1GKF A;  1FXV A;  1AI5 A;  1GK9 A;  3SRC A;  3SRB A;  3SRA A;  3L94 A;  1AJN A;  1GM8 A;  1GM9 A;  1GK0 A;  4YFA A;  4E55 A;  4PEL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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