4YFBA

Structure of n-acylhomoserine lactone acylase macq in complex with phenylacetic acid
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
168
structure length
168
Chain Sequence
STYSAEIRRTTMGVPHIKAGNWGSAGYGFGYVQAQDNLCTMADSFLTYRGERSRHLGGSAQLVYNSTLGRPRNIDSDFFHRHVISDEAVDRTMAAQPAKLLQMVEGFAAGYNRYVREAKAGGSAHAACRSEAWVQPITARDVWRRIYAANLAGGYSNFAEAIANAQPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Protein related to penicillin acylase
publication title Bifunctional quorum-quenching and antibiotic-acylase MacQ forms a 170-kDa capsule-shaped molecule containing spacer polypeptides
pubmed doi rcsb
source organism Acidovorax sp. mr-s7
total genus 54
structure length 168
sequence length 168
chains with identical sequence D, G, J
ec nomenclature
pdb deposition date 2015-02-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 4yfbA00
1AI4A 4PEMA 4K2FA 1PNLA 2AE5A 3JTRA 4YFAA 3SRAA 1GM8A 1KECA 3JTQA 4WKUA 1GM9A 1K5QA 4HSTA 1FXVA 4PELA 1GHDA 4WKSA 2ADVA 3K3WA 2AE3A 4K2GA 4WKVA 3L91A 4E56A 3S8RA 1JX9A 1AJQA 1GM7A 1FXHA 1GK9A 1JVZA 1PNKA 1E3AA 2WYCA 1GKFA 3ML0A 1CP9A 3SRCA 4M1JA 1H2GA 2AE4A 2WYBA 4BTHA 4HSRA 4E55A 3L94A 4YFBA 1AJNA 2WYDA 3SRBA 1AI6A 1FM2A 1JW0A 4WKTA 4YF9A 4E57A 1KEHA 1OR0A 1K5SA 1AJPA 1AI5A 1PNMA 2WYEA 1K7DA 1AI7A 1GK0A 1GK1A
chains in the Genus database with same CATH superfamily
1AI4A 4PEMA 4K2FA 1PNLA 2AE5A 3JTRA 4YFAA 3SRAA 1GM8A 1KECA 3JTQA 4WKUA 1GM9A 1K5QA 4HSTA 1FXVA 4PELA 1GHDA 4WKSA 2ADVA 3K3WA 2AE3A 4K2GA 4WKVA 3L91A 4E56A 3S8RA 1JX9A 1AJQA 1GM7A 1FXHA 1GK9A 1JVZA 1PNKA 1E3AA 2WYCA 1GKFA 3FGTA 1CP9A 3ML0A 4M1JA 1H2GA 2AE4A 2WYBA 3SRCA 4HSRA 4BTHA 3FGRA 3L94A 4E55A 4YFBA 1AJNA 2WYDA 3SRBA 1AI6A 1FM2A 1JW0A 4WKTA 4YF9A 4E57A 1KEHA 4BWCA 1OR0A 1K5SA 1AJPA 1AI5A 1PNMA 2WYEA 1K7DA 1AI7A 1GK0A 1GK1A
chains in the Genus database with same CATH topology
1AI4A 4PEMA 4K2FA 1PNLA 2AE5A 3JTRA 4YFAA 3SRAA 1GM8A 1KECA 3JTQA 4WKUA 1GM9A 1K5QA 4HSTA 1FXVA 4PELA 1GHDA 4WKSA 2ADVA 3K3WA 2AE3A 4K2GA 4WKVA 3L91A 4E56A 3S8RA 1JX9A 1AJQA 1GM7A 1FXHA 1GK9A 1JVZA 1PNKA 1E3AA 2WYCA 1GKFA 3ML0A 1CP9A 3SRCA 4M1JA 1H2GA 2AE4A 2WYBA 4BTHA 4HSRA 4E55A 3L94A 4YFBA 1AJNA 2WYDA 3SRBA 1AI6A 1FM2A 1JW0A 4WKTA 4YF9A 4E57A 1KEHA 1OR0A 1K5SA 1AJPA 1AI5A 1PNMA 2WYEA 1K7DA 1AI7A 1GK0A 1GK1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AI4 A;  4PEM A;  4K2F A;  1PNL A;  2AE5 A;  3JTR A;  4YFA A;  3SRA A;  1GM8 A;  1KEC A;  3JTQ A;  4WKU A;  1GM9 A;  1K5Q A;  4HST A;  1FXV A;  4PEL A;  1GHD A;  4WKS A;  2ADV A;  3K3W A;  2AE3 A;  4K2G A;  4WKV A;  3L91 A;  4E56 A;  3S8R A;  1JX9 A;  1AJQ A;  1GM7 A;  1FXH A;  1GK9 A;  1JVZ A;  1PNK A;  1E3A A;  2WYC A;  1GKF A;  3ML0 A;  1CP9 A;  3SRC A;  4M1J A;  1H2G A;  2AE4 A;  2WYB A;  4BTH A;  4HSR A;  4E55 A;  3L94 A;  4YFB A;  1AJN A;  2WYD A;  3SRB A;  1AI6 A;  1FM2 A;  1JW0 A;  4WKT A;  4YF9 A;  4E57 A;  1KEH A;  1OR0 A;  1K5S A;  1AJP A;  1AI5 A;  1PNM A;  2WYE A;  1K7D A;  1AI7 A;  1GK0 A;  1GK1 A; 
#chains in the Genus database with same CATH topology
 1AI4 A;  4PEM A;  4K2F A;  1PNL A;  2AE5 A;  3JTR A;  4YFA A;  3SRA A;  1GM8 A;  1KEC A;  3JTQ A;  4WKU A;  1GM9 A;  1K5Q A;  4HST A;  1FXV A;  4PEL A;  1GHD A;  4WKS A;  2ADV A;  3K3W A;  2AE3 A;  4K2G A;  4WKV A;  3L91 A;  4E56 A;  3S8R A;  1JX9 A;  1AJQ A;  1GM7 A;  1FXH A;  1GK9 A;  1JVZ A;  1PNK A;  1E3A A;  2WYC A;  1GKF A;  3FGT A;  1CP9 A;  3ML0 A;  4M1J A;  1H2G A;  2AE4 A;  2WYB A;  3SRC A;  4HSR A;  4BTH A;  3FGR A;  3L94 A;  4E55 A;  4YFB A;  1AJN A;  2WYD A;  3SRB A;  1AI6 A;  1FM2 A;  1JW0 A;  4WKT A;  4YF9 A;  4E57 A;  1KEH A;  4BWC A;  1OR0 A;  1K5S A;  1AJP A;  1AI5 A;  1PNM A;  2WYE A;  1K7D A;  1AI7 A;  1GK0 A;  1GK1 A; 
#chains in the Genus database with same CATH homology
 1AI4 A;  4PEM A;  4K2F A;  1PNL A;  2AE5 A;  3JTR A;  4YFA A;  3SRA A;  1GM8 A;  1KEC A;  3JTQ A;  4WKU A;  1GM9 A;  1K5Q A;  4HST A;  1FXV A;  4PEL A;  1GHD A;  4WKS A;  2ADV A;  3K3W A;  2AE3 A;  4K2G A;  4WKV A;  3L91 A;  4E56 A;  3S8R A;  1JX9 A;  1AJQ A;  1GM7 A;  1FXH A;  1GK9 A;  1JVZ A;  1PNK A;  1E3A A;  2WYC A;  1GKF A;  3ML0 A;  1CP9 A;  3SRC A;  4M1J A;  1H2G A;  2AE4 A;  2WYB A;  4BTH A;  4HSR A;  4E55 A;  3L94 A;  4YFB A;  1AJN A;  2WYD A;  3SRB A;  1AI6 A;  1FM2 A;  1JW0 A;  4WKT A;  4YF9 A;  4E57 A;  1KEH A;  1OR0 A;  1K5S A;  1AJP A;  1AI5 A;  1PNM A;  2WYE A;  1K7D A;  1AI7 A;  1GK0 A;  1GK1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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