4YFXE

Escherichia coli rna polymerase in complex with myxopyronin b
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
89
structure length
89
Chain Sequence
ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/transcription inhibitor
molecule keywords DNA-directed RNA polymerase subunit alpha
publication title X-ray Crystal Structures of Escherichia coli RNA Polymerase with Switch Region Binding Inhibitors Enable Rational Design of Squaramides with an Improved Fraction Unbound to Human Plasma Protein.
pubmed doi rcsb
source organism Escherichia coli o139:h28 (strain e24377a / etec)
total genus 24
structure length 89
sequence length 89
chains with identical sequence K
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2015-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 4yfxE00
2PMZK 4G7ZE 2NVTF 3GTOF 4LK1E 1QKLA 4XSZE 4OIPE 2E2JF 2NVXF 4C3JF 3S15F 4X6AF 3H0GF 5FJ8F 3S1QF 5M3MF 3PO2F 4A93F 4MQ9E 4BXXF 5E18E 1TWGF 5IPLE 4G7OE 2JA7F 4MEXE 1YNNK 4KMUE 2R93F 2JA6F 4C3HF 4JK1E 5C3EF 1SMYE 4Q5SE 4Q4ZE 3I4MF 3S1NF 3HOZF 3GTPF 3HKZK 3GTJF 2E2IF 1TWHF 1YNJK 4A3BF 4Y7NF 3HOXF 5M5YF 2E2HF 2VUMF 5FLMF 3S2HF 4GZYE 1I6VE 3I4NF 3HOUF 3RZOF 5D4EE 4A3CF 1TWFF 3K7AF 5M5XF 3GTMF 3GTGF 1K83F 2BE5E 4YFNE 3HOYF 4G7HE 4OIRE 4YFXE 3GTLF 2O5JE 2NVQF 3HOVF 4BBSF 3HOWF 2B63F 2WB1I 1IW7E 1ZYRE 4LLGE 5M3FF 1HQME 3S1RF 2R92F 1TWAF 1Y1VF 5C4XF 4BY1F 1I50F 4A3EF 3EQLE 5IYCF 1Y1WF 5C4JF 5TMCE 3M4OF 3S16F 3FKIF 2JA5F 3S2DF 2YU9F 3WODE 1SFOF 2Y0SI 2PPBE 4OIQE 3H3VG 4KN7E 4AYBK 3S1MF 1I3QF 3S14F 5IP7F 4A3LF 3CQZF 4XLNE 4YFKE 4OIOE 4A3DF 4LJZE 1WCMF 5IYDF 4A3JF 4XLPE 4C3IF 4A3KF 5M5WF 4YG2E 1I6HF 1R9TF 4KN4E 4ZH4E 2A6HE 4A3MF 4OINE 4BBRF 2NVYF 4XSXE 2O5IE 3GTQF 3GTKF 4A3GF 2A69E 4Y52F 5IP9F 5D4CE 2R7ZF 3DXJE 2CW0E 5C44F 5TMFE 2WAQK 4BY7F 5E17E 4A3IF 5D4DE 5IYBF 2A68E 1TWCF 2A6EE 4MEYE 3PO3F 2JA8F 4C2MF 3RZDF 4LK0E 4A3FF 5BYHE 3M3YF 3S17F
chains in the Genus database with same CATH superfamily
1TWGE 2PMZH 1K83E 4QIWK 2PMZK 4G7ZE 2NVTF 3GTLE 3GTOF 2NVQE 4BBSE 2B63E 2WB1H 2R93E 4LK1E 5M3FE 1QKLA 4XSZE 4OIPE 4C3HE 2E2JF 2NVXF 5C3EE 1Y1VE 5C4XE 4BY1E 4C3JF 3S15F 4X6AF 3HOZE 3GTJE 3H0GF 3S2HF 5FJ8F 3S1QF 5M3MF 3PO2F 1TWHE 3S16E 4MQ9E 4A93F 4A3BE 4BXXF 5E18E 1TWGF 3S2DE 2YU9E 5IPLE 1SFOE 3S1ME 4G7OE 2Y0SH 2JA7F 3S2HE 2VUME 5FLME 4MEXE 1YNNK 3RZOE 4KMUE 4A3CE 5IP7E 4A3LE 2R93F 1TWFE 3K7AE 4QIWH 5M5XE 2JA6F 3GTGE 3GTME 4C3HF 4JK1E 5C3EF 5IYDE 1SMYE 3HOYE 4A3JE 4Q5SE 4Q4ZE 3I4MF 3S1NF 3HOZF 3GTPF 3HKZK 4C3IE 3GTJF 2E2IF 3HOVE 3HOWE 1TWHF 1YNJK 1R9TE 4A3BF 4Y7NF 3S1RE 3HOXF 2R92E 1TWAE 5M5YF 2E2HF 2VUMF 5FLMF 1I50E 4A3EE 1I6VE 3I4NF 5IYCE 3HOUF 2NVYE 1Y1WE 4GZYE 3RZOF 5D4EE 5C4JE 4A3CF 3M4OE 1TWFF 3FKIE 3K7AF 5M5XF 2JA5E 3GTMF 1K83F 2BE5E 4YFNE 3GTGF 4A3GE 5IP9E 3HOYF 4G7HE 1I3QE 3S14E 4OIRE 4YFXE 5C44E 3GTLF 4A3DF 2KRXA 3H3VF 4BY7E 2NVQF 3HOVF 3PO3F 4BBSF 3HOWF 2O5JE 2B63F 2WB1I 1IW7E 1ZYRE 2JA8E 4LLGE 3CQZE 4C2ME 1HQME 5M3FF 3S1RF 2R92F 4A3DE 1TWAF 1WCME 1Y1VF 5C4XF 3M3YE 4BY1F 1I50F 3HKZH 4A3EF 3EQLE 5IYCF 1DZFA 1Y1WF 4A3KE 5C4JF 5TMCE 5M5WE 2NVTE 3M4OF 3S16F 3GTOE 1I6HE 3FKIF 2JA5F 3S2DF 2YU9F 3WODE 1SFOF 2Y0SI 2PPBE 4OIQE 3H3VG 4KN7E 4AYBK 3S1MF 1I3QF 3S14F 4A3ME 4BBRE 3S15E 4X6AE 5IP7F 4A3LF 1EIKA 3CQZF 4XLNE 3GTKE 3GTQE 4YFKE 5FJ8E 4OIOE 4LJZE 1WCMF 5M3ME 3PO2E 3S1QE 5IYDF 2R7ZE 4A93E 4Y52E 4A3JF 4XLPE 4C3IF 4A3KF 4A3IE 2JA7E 5M5WF 5IYBE 1TWCE 4YG2E 1I6HF 3PO3E 1R9TF 4KN4E 3RZDE 4A3FE 4ZH4E 3S17E 2A6HE 2JA6E 4A3MF 4OINE 4BBRF 2NVYF 3I4ME 4XSXE 2O5IE 3S1NE 3GTPE 3GTQF 3GTKF 4AYBH 2E2IE 4A3GF 2A69E 4Y52F 5IP9F 5D4CE 2R7ZF 2WAQH 4Y7NE 3DXJE 3HOXE 2CW0E 5C44F 5TMFE 2WAQK 2E2JE 4BY7F 2NVXE 5M5YE 4A3IF 4C3JE 2E2HE 5D4DE 5E17E 5IYBF 2A68E 1TWCF 2A6EE 4MEYE 3HOUE 2JA8F 4C2MF 3RZDF 3I4NE 3H0GE 4LK0E 4A3FF 5BYHE 3M3YF 3S17F 4BXXE
chains in the Genus database with same CATH topology
4QIWK 2PMZK 4G7ZE 2NVTF 3GTOF 4LK1E 1QKLA 4XSZE 4OIPE 2E2JF 2NVXF 4C3JF 3S15F 4X6AF 3H0GF 5FJ8F 3S1QF 5M3MF 3PO2F 4A93F 4MQ9E 4BXXF 5E18E 1TWGF 5IPLE 4G7OE 2JA7F 4MEXE 1YNNK 4KMUE 2R93F 2JA6F 4C3HF 4JK1E 5C3EF 1SMYE 4Q5SE 4Q4ZE 3I4MF 3S1NF 3HOZF 3GTPF 3HKZK 3GTJF 2E2IF 1TWHF 1YNJK 4A3BF 4Y7NF 3HOXF 5M5YF 2E2HF 2VUMF 5FLMF 3S2HF 4GZYE 1I6VE 3I4NF 3HOUF 3RZOF 5D4EE 4A3CF 1TWFF 3K7AF 5M5XF 3GTMF 3GTGF 1K83F 2BE5E 4YFNE 3HOYF 4G7HE 4OIRE 4YFXE 3GTLF 2KRXA 2O5JE 2NVQF 3HOVF 4BBSF 3HOWF 2B63F 2WB1I 1IW7E 1ZYRE 4LLGE 5M3FF 1HQME 3S1RF 2R92F 1TWAF 1Y1VF 5C4XF 4BY1F 1I50F 4A3EF 3EQLE 5IYCF 1Y1WF 5C4JF 5TMCE 3M4OF 3S16F 3FKIF 2JA5F 3S2DF 2YU9F 3WODE 1SFOF 2Y0SI 2PPBE 4OIQE 3H3VG 4KN7E 4AYBK 3S1MF 1I3QF 3S14F 5IP7F 4A3LF 3CQZF 4XLNE 4YFKE 4OIOE 4A3DF 4LJZE 1WCMF 5IYDF 4A3JF 4XLPE 4C3IF 4A3KF 5M5WF 4YG2E 1I6HF 1R9TF 4KN4E 4ZH4E 2A6HE 4A3MF 4OINE 4BBRF 2NVYF 4XSXE 2O5IE 3GTQF 3GTKF 4A3GF 2A69E 4Y52F 5IP9F 5D4CE 2R7ZF 3DXJE 2CW0E 5C44F 5TMFE 2WAQK 4BY7F 5E17E 4A3IF 5D4DE 5IYBF 2A68E 1TWCF 2A6EE 4MEYE 3PO3F 2JA8F 4C2MF 3RZDF 4LK0E 4A3FF 5BYHE 3M3YF 3S17F
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PMZ K;  4G7Z E;  2NVT F;  3GTO F;  4LK1 E;  1QKL A;  4XSZ E;  4OIP E;  2E2J F;  2NVX F;  4C3J F;  3S15 F;  4X6A F;  3H0G F;  5FJ8 F;  3S1Q F;  5M3M F;  3PO2 F;  4A93 F;  4MQ9 E;  4BXX F;  5E18 E;  1TWG F;  5IPL E;  4G7O E;  2JA7 F;  4MEX E;  1YNN K;  4KMU E;  2R93 F;  2JA6 F;  4C3H F;  4JK1 E;  5C3E F;  1SMY E;  4Q5S E;  4Q4Z E;  3I4M F;  3S1N F;  3HOZ F;  3GTP F;  3HKZ K;  3GTJ F;  2E2I F;  1TWH F;  1YNJ K;  4A3B F;  4Y7N F;  3HOX F;  5M5Y F;  2E2H F;  2VUM F;  5FLM F;  3S2H F;  4GZY E;  1I6V E;  3I4N F;  3HOU F;  3RZO F;  5D4E E;  4A3C F;  1TWF F;  3K7A F;  5M5X F;  3GTM F;  3GTG F;  1K83 F;  2BE5 E;  4YFN E;  3HOY F;  4G7H E;  4OIR E;  4YFX E;  3GTL F;  2O5J E;  2NVQ F;  3HOV F;  4BBS F;  3HOW F;  2B63 F;  2WB1 I;  1IW7 E;  1ZYR E;  4LLG E;  5M3F F;  1HQM E;  3S1R F;  2R92 F;  1TWA F;  1Y1V F;  5C4X F;  4BY1 F;  1I50 F;  4A3E F;  3EQL E;  5IYC F;  1Y1W F;  5C4J F;  5TMC E;  3M4O F;  3S16 F;  3FKI F;  2JA5 F;  3S2D F;  2YU9 F;  3WOD E;  1SFO F;  2Y0S I;  2PPB E;  4OIQ E;  3H3V G;  4KN7 E;  4AYB K;  3S1M F;  1I3Q F;  3S14 F;  5IP7 F;  4A3L F;  3CQZ F;  4XLN E;  4YFK E;  4OIO E;  4A3D F;  4LJZ E;  1WCM F;  5IYD F;  4A3J F;  4XLP E;  4C3I F;  4A3K F;  5M5W F;  4YG2 E;  1I6H F;  1R9T F;  4KN4 E;  4ZH4 E;  2A6H E;  4A3M F;  4OIN E;  4BBR F;  2NVY F;  4XSX E;  2O5I E;  3GTQ F;  3GTK F;  4A3G F;  2A69 E;  4Y52 F;  5IP9 F;  5D4C E;  2R7Z F;  3DXJ E;  2CW0 E;  5C44 F;  5TMF E;  2WAQ K;  4BY7 F;  5E17 E;  4A3I F;  5D4D E;  5IYB F;  2A68 E;  1TWC F;  2A6E E;  4MEY E;  3PO3 F;  2JA8 F;  4C2M F;  3RZD F;  4LK0 E;  4A3F F;  5BYH E;  3M3Y F;  3S17 F; 
#chains in the Genus database with same CATH topology
 1TWG E;  2PMZ H;  1K83 E;  4QIW K;  2PMZ K;  4G7Z E;  2NVT F;  3GTL E;  3GTO F;  2NVQ E;  4BBS E;  2B63 E;  2WB1 H;  2R93 E;  4LK1 E;  5M3F E;  1QKL A;  4XSZ E;  4OIP E;  4C3H E;  2E2J F;  2NVX F;  5C3E E;  1Y1V E;  5C4X E;  4BY1 E;  4C3J F;  3S15 F;  4X6A F;  3HOZ E;  3GTJ E;  3H0G F;  3S2H F;  5FJ8 F;  3S1Q F;  5M3M F;  3PO2 F;  1TWH E;  3S16 E;  4MQ9 E;  4A93 F;  4A3B E;  4BXX F;  5E18 E;  1TWG F;  3S2D E;  2YU9 E;  5IPL E;  1SFO E;  3S1M E;  4G7O E;  2Y0S H;  2JA7 F;  3S2H E;  2VUM E;  5FLM E;  4MEX E;  1YNN K;  3RZO E;  4KMU E;  4A3C E;  5IP7 E;  4A3L E;  2R93 F;  1TWF E;  3K7A E;  4QIW H;  5M5X E;  2JA6 F;  3GTG E;  3GTM E;  4C3H F;  4JK1 E;  5C3E F;  5IYD E;  1SMY E;  3HOY E;  4A3J E;  4Q5S E;  4Q4Z E;  3I4M F;  3S1N F;  3HOZ F;  3GTP F;  3HKZ K;  4C3I E;  3GTJ F;  2E2I F;  3HOV E;  3HOW E;  1TWH F;  1YNJ K;  1R9T E;  4A3B F;  4Y7N F;  3S1R E;  3HOX F;  2R92 E;  1TWA E;  5M5Y F;  2E2H F;  2VUM F;  5FLM F;  1I50 E;  4A3E E;  1I6V E;  3I4N F;  5IYC E;  3HOU F;  2NVY E;  1Y1W E;  4GZY E;  3RZO F;  5D4E E;  5C4J E;  4A3C F;  3M4O E;  1TWF F;  3FKI E;  3K7A F;  5M5X F;  2JA5 E;  3GTM F;  1K83 F;  2BE5 E;  4YFN E;  3GTG F;  4A3G E;  5IP9 E;  3HOY F;  4G7H E;  1I3Q E;  3S14 E;  4OIR E;  4YFX E;  5C44 E;  3GTL F;  4A3D F;  2KRX A;  3H3V F;  4BY7 E;  2NVQ F;  3HOV F;  3PO3 F;  4BBS F;  3HOW F;  2O5J E;  2B63 F;  2WB1 I;  1IW7 E;  1ZYR E;  2JA8 E;  4LLG E;  3CQZ E;  4C2M E;  1HQM E;  5M3F F;  3S1R F;  2R92 F;  4A3D E;  1TWA F;  1WCM E;  1Y1V F;  5C4X F;  3M3Y E;  4BY1 F;  1I50 F;  3HKZ H;  4A3E F;  3EQL E;  5IYC F;  1DZF A;  1Y1W F;  4A3K E;  5C4J F;  5TMC E;  5M5W E;  2NVT E;  3M4O F;  3S16 F;  3GTO E;  1I6H E;  3FKI F;  2JA5 F;  3S2D F;  2YU9 F;  3WOD E;  1SFO F;  2Y0S I;  2PPB E;  4OIQ E;  3H3V G;  4KN7 E;  4AYB K;  3S1M F;  1I3Q F;  3S14 F;  4A3M E;  4BBR E;  3S15 E;  4X6A E;  5IP7 F;  4A3L F;  1EIK A;  3CQZ F;  4XLN E;  3GTK E;  3GTQ E;  4YFK E;  5FJ8 E;  4OIO E;  4LJZ E;  1WCM F;  5M3M E;  3PO2 E;  3S1Q E;  5IYD F;  2R7Z E;  4A93 E;  4Y52 E;  4A3J F;  4XLP E;  4C3I F;  4A3K F;  4A3I E;  2JA7 E;  5M5W F;  5IYB E;  1TWC E;  4YG2 E;  1I6H F;  3PO3 E;  1R9T F;  4KN4 E;  3RZD E;  4A3F E;  4ZH4 E;  3S17 E;  2A6H E;  2JA6 E;  4A3M F;  4OIN E;  4BBR F;  2NVY F;  3I4M E;  4XSX E;  2O5I E;  3S1N E;  3GTP E;  3GTQ F;  3GTK F;  4AYB H;  2E2I E;  4A3G F;  2A69 E;  4Y52 F;  5IP9 F;  5D4C E;  2R7Z F;  2WAQ H;  4Y7N E;  3DXJ E;  3HOX E;  2CW0 E;  5C44 F;  5TMF E;  2WAQ K;  2E2J E;  4BY7 F;  2NVX E;  5M5Y E;  4A3I F;  4C3J E;  2E2H E;  5D4D E;  5E17 E;  5IYB F;  2A68 E;  1TWC F;  2A6E E;  4MEY E;  3HOU E;  2JA8 F;  4C2M F;  3RZD F;  3I4N E;  3H0G E;  4LK0 E;  4A3F F;  5BYH E;  3M3Y F;  3S17 F;  4BXX E; 
#chains in the Genus database with same CATH homology
 4QIW K;  2PMZ K;  4G7Z E;  2NVT F;  3GTO F;  4LK1 E;  1QKL A;  4XSZ E;  4OIP E;  2E2J F;  2NVX F;  4C3J F;  3S15 F;  4X6A F;  3H0G F;  5FJ8 F;  3S1Q F;  5M3M F;  3PO2 F;  4A93 F;  4MQ9 E;  4BXX F;  5E18 E;  1TWG F;  5IPL E;  4G7O E;  2JA7 F;  4MEX E;  1YNN K;  4KMU E;  2R93 F;  2JA6 F;  4C3H F;  4JK1 E;  5C3E F;  1SMY E;  4Q5S E;  4Q4Z E;  3I4M F;  3S1N F;  3HOZ F;  3GTP F;  3HKZ K;  3GTJ F;  2E2I F;  1TWH F;  1YNJ K;  4A3B F;  4Y7N F;  3HOX F;  5M5Y F;  2E2H F;  2VUM F;  5FLM F;  3S2H F;  4GZY E;  1I6V E;  3I4N F;  3HOU F;  3RZO F;  5D4E E;  4A3C F;  1TWF F;  3K7A F;  5M5X F;  3GTM F;  3GTG F;  1K83 F;  2BE5 E;  4YFN E;  3HOY F;  4G7H E;  4OIR E;  4YFX E;  3GTL F;  2KRX A;  2O5J E;  2NVQ F;  3HOV F;  4BBS F;  3HOW F;  2B63 F;  2WB1 I;  1IW7 E;  1ZYR E;  4LLG E;  5M3F F;  1HQM E;  3S1R F;  2R92 F;  1TWA F;  1Y1V F;  5C4X F;  4BY1 F;  1I50 F;  4A3E F;  3EQL E;  5IYC F;  1Y1W F;  5C4J F;  5TMC E;  3M4O F;  3S16 F;  3FKI F;  2JA5 F;  3S2D F;  2YU9 F;  3WOD E;  1SFO F;  2Y0S I;  2PPB E;  4OIQ E;  3H3V G;  4KN7 E;  4AYB K;  3S1M F;  1I3Q F;  3S14 F;  5IP7 F;  4A3L F;  3CQZ F;  4XLN E;  4YFK E;  4OIO E;  4A3D F;  4LJZ E;  1WCM F;  5IYD F;  4A3J F;  4XLP E;  4C3I F;  4A3K F;  5M5W F;  4YG2 E;  1I6H F;  1R9T F;  4KN4 E;  4ZH4 E;  2A6H E;  4A3M F;  4OIN E;  4BBR F;  2NVY F;  4XSX E;  2O5I E;  3GTQ F;  3GTK F;  4A3G F;  2A69 E;  4Y52 F;  5IP9 F;  5D4C E;  2R7Z F;  3DXJ E;  2CW0 E;  5C44 F;  5TMF E;  2WAQ K;  4BY7 F;  5E17 E;  4A3I F;  5D4D E;  5IYB F;  2A68 E;  1TWC F;  2A6E E;  4MEY E;  3PO3 F;  2JA8 F;  4C2M F;  3RZD F;  4LK0 E;  4A3F F;  5BYH E;  3M3Y F;  3S17 F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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