4YK9A

Complex structure of bcl-xl and mutated bim bh3 domain
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
195
structure length
142
Chain Sequence
SQSNRELVVDFLSYKLSQKGYSWSQFSDVAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Bcl-2-like protein 1
publication title The structure of a Bcl-xL/Bim fragment complex: implications for Bim function.
pubmed doi rcsb
source organism Mus musculus
total genus 60
structure length 142
sequence length 195
chains with identical sequence F
ec nomenclature
pdb deposition date 2015-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 4yk9A00
2BZWA 1O0LA 2O2FA 5IEZA 2PQKA 4BPIA 1R2GA 2RODA 1PQ1A 3KZ0A 2ME8A 4ZIFA 1BXLA 1ZY3A 1DDBA 4B4SA 3IHEA 2B48A 1PQ0A 4ZBIA 2KUAA 2MHSA 4YK9A 4ZIHA 3WIXA 4QNQA 4OYDA 3MQPA 5FDOA 1R2HA 3BL2A 2LR1A 4U2UA 4BD7A 4HW3A 3QBRA 4BPJA 5JSBA 2A5YA 4ZEQA 2BIDA 3IIHA 4WMRA 2O2MA 3KJ1A 4ZIEA 1Q59A 2W3LA 4ZIIA 5C6HA 3CVAX 2VOFA 5FDRA 1MAZA 2K7WA 5KTGA 4S0PA 2KBWA 3D7VA 1GJHA 2MEJA 4QVXA 4HW2A 1YSWA 2VOHA 2IMTA 1G5JA 2NLAA 1WSXA 4ZIGA 3IHDA 3IHCA 1YSNA 3IO9A 2IMSA 2WH6A 2VOIA 4S0OA 1G5MA 1LXLA 4ZBFA 1YSGA 2O2NA 1R2EA 2V6QA 2XPXA 3IIGA 1R2IA 5FC4A 1TY4A 4G35A 4U2VA 1YSIA 2YV6A 3KJ2A 4K5BC 2JCNA 1AF3A 2VOGA 3DVUA 2ROCA 1MK3A 2M5BA 1K3KA 1R2DA 1OHUA 4BDUA 3MK8A 5KU9A 5C3FA 4BD6A 2JM6B 2O21A 3KJ0A 4OQ5A 2XA0A 5FMIA 3WIYA 2VM6A 4HW4A 3PK1A 4BD2A 1F16A 5IF4A 3ILCA 4OQ6A 4YJ4A 3I1HA 4BD8A 2ABOA 2O22A 4MI8A 2NL9A
chains in the Genus database with same CATH superfamily
2BZWA 2VTYA 1O0LA 2O2FA 5IEZA 2PQKA 4BPIA 1R2GA 2RODA 1PQ1A 3KZ0A 2ME8A 4ZIFA 1BXLA 2VVWA 2I39A 1ZY3A 4UF2A 1DDBA 4B4SA 3IHEA 2B48A 1PQ0A 2O42A 2VVXA 4ZBIA 2JBYA 2KUAA 2MHSA 4YK9A 4UF3A 4ZIHA 3WIXA 4QNQA 4OYDA 3MQPA 5FDOA 1R2HA 3BL2A 2LR1A 4U2UA 4BD7A 4HW3A 3QBRA 4BPJA 4M0SA 5JSBA 4BBBA 2A5YA 4ZEQA 2BIDA 3IIHA 4WMRA 2O2MA 3KJ1A 4ZIEA 1Q59A 2W3LA 4ZIIA 5C6HA 3CVAX 2VOFA 5FDRA 1MAZA 2K7WA 5KTGA 4S0PA 2KBWA 3D7VA 4D2LA 1GJHA 2K36A 2MEJA 4QVXA 4HW2A 1YSWA 2VOHA 2IMTA 1G5JA 2NLAA 1WSXA 4ZIGA 3IHDA 4LQKA 3IHCA 1YSNA 3IO9A 2UXEA 2IMSA 2WH6A 2VOIA 4S0OA 1G5MA 1LXLA 4ZBFA 1YSGA 2O2NA 1R2EA 2V6QA 2XPXA 3IIGA 1R2IA 5FC4A 1TY4A 4G35A 4U2VA 1YSIA 2YV6A 3KJ2A 4K5BC 2JCNA 2JBXA 1AF3A 4UF1A 2VOGA 4BBCA 3DVUA 2ROCA 1MK3A 2M5BA 1K3KA 1R2DA 1OHUA 4BDUA 4BBDA 3MK8A 5KU9A 5C3FA 4BD6A 2JM6B 2VVYA 2O21A 3KJ0A 4D2MA 4OQ5A 2XA0A 5FMIA 3WIYA 2VM6A 4HW4A 3PK1A 4BD2A 1F16A 5IF4A 3ILCA 4OQ6A 4YJ4A 3I1HA 4BD8A 2ABOA 3JRVA 2O22A 4MI8A 2NL9A
chains in the Genus database with same CATH topology
2BZWA 1O0LA 2O2FA 5IEZA 2PQKA 4BPIA 1R2GA 2RODA 1PQ1A 3KZ0A 2ME8A 4ZIFA 1BXLA 1ZY3A 1DDBA 4B4SA 3IHEA 2B48A 1PQ0A 4ZBIA 2KUAA 2MHSA 4YK9A 4ZIHA 3WIXA 4QNQA 4OYDA 3MQPA 5FDOA 1R2HA 3BL2A 2LR1A 4U2UA 4BD7A 4HW3A 3QBRA 4BPJA 5JSBA 2A5YA 4ZEQA 2BIDA 3IIHA 4WMRA 2O2MA 3KJ1A 4ZIEA 1Q59A 2W3LA 4ZIIA 5C6HA 3CVAX 2VOFA 5FDRA 1MAZA 2K7WA 5KTGA 4S0PA 2KBWA 3D7VA 1GJHA 2MEJA 4QVXA 4HW2A 1YSWA 2VOHA 2IMTA 1G5JA 2NLAA 1WSXA 4ZIGA 3IHDA 3IHCA 1YSNA 3IO9A 2IMSA 2WH6A 2VOIA 4S0OA 1G5MA 1LXLA 4ZBFA 1YSGA 2O2NA 1R2EA 2V6QA 2XPXA 3IIGA 1R2IA 5FC4A 1TY4A 4G35A 4U2VA 1YSIA 2YV6A 3KJ2A 4K5BC 2JCNA 1AF3A 2VOGA 3DVUA 2ROCA 1MK3A 2M5BA 1K3KA 1R2DA 1OHUA 4BDUA 3MK8A 5KU9A 5C3FA 4BD6A 2JM6B 2O21A 3KJ0A 4OQ5A 2XA0A 5FMIA 3WIYA 2VM6A 4HW4A 3PK1A 4BD2A 1F16A 5IF4A 3ILCA 4OQ6A 4YJ4A 3I1HA 4BD8A 2ABOA 2O22A 4MI8A 2NL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BZW A;  1O0L A;  2O2F A;  5IEZ A;  2PQK A;  4BPI A;  1R2G A;  2ROD A;  1PQ1 A;  3KZ0 A;  2ME8 A;  4ZIF A;  1BXL A;  1ZY3 A;  1DDB A;  4B4S A;  3IHE A;  2B48 A;  1PQ0 A;  4ZBI A;  2KUA A;  2MHS A;  4YK9 A;  4ZIH A;  3WIX A;  4QNQ A;  4OYD A;  3MQP A;  5FDO A;  1R2H A;  3BL2 A;  2LR1 A;  4U2U A;  4BD7 A;  4HW3 A;  3QBR A;  4BPJ A;  5JSB A;  2A5Y A;  4ZEQ A;  2BID A;  3IIH A;  4WMR A;  2O2M A;  3KJ1 A;  4ZIE A;  1Q59 A;  2W3L A;  4ZII A;  5C6H A;  3CVA X;  2VOF A;  5FDR A;  1MAZ A;  2K7W A;  5KTG A;  4S0P A;  2KBW A;  3D7V A;  1GJH A;  2MEJ A;  4QVX A;  4HW2 A;  1YSW A;  2VOH A;  2IMT A;  1G5J A;  2NLA A;  1WSX A;  4ZIG A;  3IHD A;  3IHC A;  1YSN A;  3IO9 A;  2IMS A;  2WH6 A;  2VOI A;  4S0O A;  1G5M A;  1LXL A;  4ZBF A;  1YSG A;  2O2N A;  1R2E A;  2V6Q A;  2XPX A;  3IIG A;  1R2I A;  5FC4 A;  1TY4 A;  4G35 A;  4U2V A;  1YSI A;  2YV6 A;  3KJ2 A;  4K5B C;  2JCN A;  1AF3 A;  2VOG A;  3DVU A;  2ROC A;  1MK3 A;  2M5B A;  1K3K A;  1R2D A;  1OHU A;  4BDU A;  3MK8 A;  5KU9 A;  5C3F A;  4BD6 A;  2JM6 B;  2O21 A;  3KJ0 A;  4OQ5 A;  2XA0 A;  5FMI A;  3WIY A;  2VM6 A;  4HW4 A;  3PK1 A;  4BD2 A;  1F16 A;  5IF4 A;  3ILC A;  4OQ6 A;  4YJ4 A;  3I1H A;  4BD8 A;  2ABO A;  2O22 A;  4MI8 A;  2NL9 A; 
#chains in the Genus database with same CATH topology
 2BZW A;  2VTY A;  1O0L A;  2O2F A;  5IEZ A;  2PQK A;  4BPI A;  1R2G A;  2ROD A;  1PQ1 A;  3KZ0 A;  2ME8 A;  4ZIF A;  1BXL A;  2VVW A;  2I39 A;  1ZY3 A;  4UF2 A;  1DDB A;  4B4S A;  3IHE A;  2B48 A;  1PQ0 A;  2O42 A;  2VVX A;  4ZBI A;  2JBY A;  2KUA A;  2MHS A;  4YK9 A;  4UF3 A;  4ZIH A;  3WIX A;  4QNQ A;  4OYD A;  3MQP A;  5FDO A;  1R2H A;  3BL2 A;  2LR1 A;  4U2U A;  4BD7 A;  4HW3 A;  3QBR A;  4BPJ A;  4M0S A;  5JSB A;  4BBB A;  2A5Y A;  4ZEQ A;  2BID A;  3IIH A;  4WMR A;  2O2M A;  3KJ1 A;  4ZIE A;  1Q59 A;  2W3L A;  4ZII A;  5C6H A;  3CVA X;  2VOF A;  5FDR A;  1MAZ A;  2K7W A;  5KTG A;  4S0P A;  2KBW A;  3D7V A;  4D2L A;  1GJH A;  2K36 A;  2MEJ A;  4QVX A;  4HW2 A;  1YSW A;  2VOH A;  2IMT A;  1G5J A;  2NLA A;  1WSX A;  4ZIG A;  3IHD A;  4LQK A;  3IHC A;  1YSN A;  3IO9 A;  2UXE A;  2IMS A;  2WH6 A;  2VOI A;  4S0O A;  1G5M A;  1LXL A;  4ZBF A;  1YSG A;  2O2N A;  1R2E A;  2V6Q A;  2XPX A;  3IIG A;  1R2I A;  5FC4 A;  1TY4 A;  4G35 A;  4U2V A;  1YSI A;  2YV6 A;  3KJ2 A;  4K5B C;  2JCN A;  2JBX A;  1AF3 A;  4UF1 A;  2VOG A;  4BBC A;  3DVU A;  2ROC A;  1MK3 A;  2M5B A;  1K3K A;  1R2D A;  1OHU A;  4BDU A;  4BBD A;  3MK8 A;  5KU9 A;  5C3F A;  4BD6 A;  2JM6 B;  2VVY A;  2O21 A;  3KJ0 A;  4D2M A;  4OQ5 A;  2XA0 A;  5FMI A;  3WIY A;  2VM6 A;  4HW4 A;  3PK1 A;  4BD2 A;  1F16 A;  5IF4 A;  3ILC A;  4OQ6 A;  4YJ4 A;  3I1H A;  4BD8 A;  2ABO A;  3JRV A;  2O22 A;  4MI8 A;  2NL9 A; 
#chains in the Genus database with same CATH homology
 2BZW A;  1O0L A;  2O2F A;  5IEZ A;  2PQK A;  4BPI A;  1R2G A;  2ROD A;  1PQ1 A;  3KZ0 A;  2ME8 A;  4ZIF A;  1BXL A;  1ZY3 A;  1DDB A;  4B4S A;  3IHE A;  2B48 A;  1PQ0 A;  4ZBI A;  2KUA A;  2MHS A;  4YK9 A;  4ZIH A;  3WIX A;  4QNQ A;  4OYD A;  3MQP A;  5FDO A;  1R2H A;  3BL2 A;  2LR1 A;  4U2U A;  4BD7 A;  4HW3 A;  3QBR A;  4BPJ A;  5JSB A;  2A5Y A;  4ZEQ A;  2BID A;  3IIH A;  4WMR A;  2O2M A;  3KJ1 A;  4ZIE A;  1Q59 A;  2W3L A;  4ZII A;  5C6H A;  3CVA X;  2VOF A;  5FDR A;  1MAZ A;  2K7W A;  5KTG A;  4S0P A;  2KBW A;  3D7V A;  1GJH A;  2MEJ A;  4QVX A;  4HW2 A;  1YSW A;  2VOH A;  2IMT A;  1G5J A;  2NLA A;  1WSX A;  4ZIG A;  3IHD A;  3IHC A;  1YSN A;  3IO9 A;  2IMS A;  2WH6 A;  2VOI A;  4S0O A;  1G5M A;  1LXL A;  4ZBF A;  1YSG A;  2O2N A;  1R2E A;  2V6Q A;  2XPX A;  3IIG A;  1R2I A;  5FC4 A;  1TY4 A;  4G35 A;  4U2V A;  1YSI A;  2YV6 A;  3KJ2 A;  4K5B C;  2JCN A;  1AF3 A;  2VOG A;  3DVU A;  2ROC A;  1MK3 A;  2M5B A;  1K3K A;  1R2D A;  1OHU A;  4BDU A;  3MK8 A;  5KU9 A;  5C3F A;  4BD6 A;  2JM6 B;  2O21 A;  3KJ0 A;  4OQ5 A;  2XA0 A;  5FMI A;  3WIY A;  2VM6 A;  4HW4 A;  3PK1 A;  4BD2 A;  1F16 A;  5IF4 A;  3ILC A;  4OQ6 A;  4YJ4 A;  3I1H A;  4BD8 A;  2ABO A;  2O22 A;  4MI8 A;  2NL9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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