4YSIA

Structure of usp7 with a novel viral protein
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
143
structure length
138
Chain Sequence
TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/peptide
molecule keywords Ubiquitin carboxyl-terminal hydrolase 7
publication title Structure of USP7 with a novel viral protein
doi rcsb
source organism Homo sapiens
total genus 25
structure length 138
sequence length 143
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2015-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4ysiA00
4GHUA 3HQMA 4CA1A 1ZMSA 2CR2A 1CZYA 1FLLA 3HSVA 4GJHA 2FOPA 4M4EA 1LB6A 2FOJA 3HU6A 3IVVA 3IVBA 5E1TA 1YZEA 1D01A 2AN6A 1CA4A 3HQLA 4I7BA 4JJQA 4YSIA 3HQIA 3ZJBA 2F1ZA 1K2FA 1KZZA 4X3GA 2F1XA 1D00A 1LB5A 1L0AA 1RF3A 1F3VB 2GKWA 1QSCA 1D0JA 3MQSC 4I7DA 5H9MA 2F1YA 1D0AA 3HQHA 2FOOA 1CA9A 2A25A 4C9ZA 4K8UA 4KG9A 4GWMA 4GWNA 1CZZA 4Z8MA 1FLKA 2XXNA 4I7CA 1YY6A 2F1WA 4O1VA 1LB4A 3MQRA 3IVQA
chains in the Genus database with same CATH superfamily
4GHUA 3HQMA 4CA1A 1ZMSA 2CR2A 1CZYA 1FLLA 3HSVA 4GJHA 2FOPA 4M4EA 1LB6A 2FOJA 3HU6A 3IVVA 3IVBA 5E1TA 1YZEA 1D01A 2AN6A 1CA4A 3HQLA 4I7BA 4JJQA 4YSIA 3HQIA 3ZJBA 2F1ZA 1K2FA 1KZZA 4X3GA 2F1XA 1D00A 1LB5A 1L0AA 1RF3A 1F3VB 2GKWA 1QSCA 1D0JA 3MQSC 4I7DA 5H9MA 2F1YA 1D0AA 3HQHA 2FOOA 1CA9A 2A25A 4C9ZA 4K8UA 4KG9A 4GWMA 4GWNA 1CZZA 4Z8MA 1FLKA 2XXNA 4I7CA 1YY6A 2F1WA 4O1VA 1LB4A 3MQRA 3IVQA
chains in the Genus database with same CATH topology
4GHUA 3HQMA 4CA1A 1ZMSA 2CR2A 1CZYA 1FLLA 3HSVA 4GJHA 2FOPA 4M4EA 1LB6A 2FOJA 3HU6A 3IVVA 3IVBA 5E1TA 1YZEA 1D01A 2AN6A 1CA4A 3HQLA 4I7BA 4JJQA 4YSIA 3HQIA 3ZJBA 2F1ZA 1K2FA 1KZZA 4X3GA 2F1XA 1D00A 1LB5A 1L0AA 1RF3A 1F3VB 2GKWA 1QSCA 1D0JA 3MQSC 4I7DA 5H9MA 2F1YA 1D0AA 3HQHA 2FOOA 1CA9A 2A25A 4C9ZA 4K8UA 4KG9A 4GWMA 4GWNA 1CZZA 4Z8MA 1FLKA 2XXNA 4I7CA 1YY6A 2F1WA 4O1VA 1LB4A 3MQRA 3IVQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GHU A;  3HQM A;  4CA1 A;  1ZMS A;  2CR2 A;  1CZY A;  1FLL A;  3HSV A;  4GJH A;  2FOP A;  4M4E A;  1LB6 A;  2FOJ A;  3HU6 A;  3IVV A;  3IVB A;  5E1T A;  1YZE A;  1D01 A;  2AN6 A;  1CA4 A;  3HQL A;  4I7B A;  4JJQ A;  4YSI A;  3HQI A;  3ZJB A;  2F1Z A;  1K2F A;  1KZZ A;  4X3G A;  2F1X A;  1D00 A;  1LB5 A;  1L0A A;  1RF3 A;  1F3V B;  2GKW A;  1QSC A;  1D0J A;  3MQS C;  4I7D A;  5H9M A;  2F1Y A;  1D0A A;  3HQH A;  2FOO A;  1CA9 A;  2A25 A;  4C9Z A;  4K8U A;  4KG9 A;  4GWM A;  4GWN A;  1CZZ A;  4Z8M A;  1FLK A;  2XXN A;  4I7C A;  1YY6 A;  2F1W A;  4O1V A;  1LB4 A;  3MQR A;  3IVQ A; 
#chains in the Genus database with same CATH topology
 4GHU A;  3HQM A;  4CA1 A;  1ZMS A;  2CR2 A;  1CZY A;  1FLL A;  3HSV A;  4GJH A;  2FOP A;  4M4E A;  1LB6 A;  2FOJ A;  3HU6 A;  3IVV A;  3IVB A;  5E1T A;  1YZE A;  1D01 A;  2AN6 A;  1CA4 A;  3HQL A;  4I7B A;  4JJQ A;  4YSI A;  3HQI A;  3ZJB A;  2F1Z A;  1K2F A;  1KZZ A;  4X3G A;  2F1X A;  1D00 A;  1LB5 A;  1L0A A;  1RF3 A;  1F3V B;  2GKW A;  1QSC A;  1D0J A;  3MQS C;  4I7D A;  5H9M A;  2F1Y A;  1D0A A;  3HQH A;  2FOO A;  1CA9 A;  2A25 A;  4C9Z A;  4K8U A;  4KG9 A;  4GWM A;  4GWN A;  1CZZ A;  4Z8M A;  1FLK A;  2XXN A;  4I7C A;  1YY6 A;  2F1W A;  4O1V A;  1LB4 A;  3MQR A;  3IVQ A; 
#chains in the Genus database with same CATH homology
 4GHU A;  3HQM A;  4CA1 A;  1ZMS A;  2CR2 A;  1CZY A;  1FLL A;  3HSV A;  4GJH A;  2FOP A;  4M4E A;  1LB6 A;  2FOJ A;  3HU6 A;  3IVV A;  3IVB A;  5E1T A;  1YZE A;  1D01 A;  2AN6 A;  1CA4 A;  3HQL A;  4I7B A;  4JJQ A;  4YSI A;  3HQI A;  3ZJB A;  2F1Z A;  1K2F A;  1KZZ A;  4X3G A;  2F1X A;  1D00 A;  1LB5 A;  1L0A A;  1RF3 A;  1F3V B;  2GKW A;  1QSC A;  1D0J A;  3MQS C;  4I7D A;  5H9M A;  2F1Y A;  1D0A A;  3HQH A;  2FOO A;  1CA9 A;  2A25 A;  4C9Z A;  4K8U A;  4KG9 A;  4GWM A;  4GWN A;  1CZZ A;  4Z8M A;  1FLK A;  2XXN A;  4I7C A;  1YY6 A;  2F1W A;  4O1V A;  1LB4 A;  3MQR A;  3IVQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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