4YSXD

Crystal structure of mitochondrial rhodoquinol-fumarate reductase from ascaris suum with the specific inhibitor nn23
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
129
structure length
129
Chain Sequence
TSAAVTGAAPPQFDPIAAEKGFKPLHSHGTLFKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Succinate dehydrogenase flavoprotein
publication title Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria
pubmed doi rcsb
total genus 40
structure length 129
sequence length 129
chains with identical sequence H
ec nomenclature
pdb deposition date 2015-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF05328 CybS CybS, succinate dehydrogenase cytochrome B small subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 4ysxD00
2H88C 3ABVC 3AE3D 4YTPD 2WP9C 2WU5C 3AEED 3AECD 3AE5D 3VR8C 4YTND 3AE6D 1YQ3D 2WS3C 3SFED 3AEFD 1NEKC 3VRBC 3P4RC 3VRAD 2WDRC 3AE9C 3AEAD 3AEBC 1L0VD 3P4QC 3VR9C 1NEKD 1ZOYC 3P4PD 2FBWD 1KF6D 4YSZC 4YT0D 2B76C 4YSYC 2WDQC 5C3JC 3AE1C 1YQ4C 1ZP0D 3CIRD 2H88D 2WDVC 3ABVD 3AE7C 3AE2C 4YSXC 2WP9D 2WU5D 3VR8D 3AEGC 4KX6C 2WS3D 2ACZC 3P4SC 3VRBD 3P4RD 3AE8C 2WDRD 3AEGD 2BS3C 3AE9D 4YTMC 3AEBD 3P4QD 3VR9D 1NENC 1ZOYD 3AEDC 2H89C 4YSZD 1KFYC 3CIRC 3AE4C 2BS2C 5C2TC 2WQYC 2B76D 4YXDC 4YSYD 2WU2C 2WDQD 2H89D 3AE3C 5C3JD 3AE1D 4YTPC 1YQ4D 1QLBC 3AEEC 2WDVD 2WQYD 3AE5C 3AE7D 3AE2D 3AE6C 1YQ3C 4YSXD 3SFEC 3AEFC 4KX6D 2ACZD 3VRAC 1E7PC 3P4SD 3AEAC 1L0VC 3AE8D 3SFDC 4YTMD 3P4PC 2FBWC 1KF6C 2BS4C 4YT0C 1NEND 3AEDD 1KFYD 3SFDD 3AE4D 3AECC 1ZP0C 5C2TD 4YXDD 4YTNC 2WU2D
chains in the Genus database with same CATH superfamily
1TFFA 2H88C 2ZFYA 3ABVC 3AE3D 4YTPD 2WP9C 2WU5C 3AEED 3AECD 3AE5D 3VR8C 4YTND 4FJVA 3AE6D 1YQ3D 2WS3C 3SFED 3AEFD 1NEKC 3VRBC 3P4RC 3VRAD 2WDRC 3AE9C 3AEAD 3AEBC 1L0VD 3P4QC 3VR9C 1NEKD 1ZOYC 3P4PD 2FBWD 1KF6D 4YSZC 4YT0D 4DDIA 2B76C 4YSYC 2WDQC 4LDTA 4DDGA 5C3JC 3AE1C 1YQ4C 1ZP0D 3CIRD 2H88D 2WDVC 3ABVD 3AE7C 3AE2C 4YSXC 2WP9D 2WU5D 3VR8D 3AEGC 4KX6C 2WS3D 2ACZC 3P4SC 3VRBD 3P4RD 3AE8C 2WDRD 3AEGD 2BS3C 3AE9D 4YTMC 3AEBD 3P4QD 3VR9D 4I6LA 1NENC 1ZOYD 4DHIB 3AEDC 2H89C 4YSZD 1KFYC 3CIRC 3AE4C 2BS2C 5C2TC 2WQYC 2B76D 4YXDC 4YSYD 2WU2C 2WDQD 2H89D 3AE3C 5C3JD 3AE1D 4YTPC 1YQ4D 1QLBC 3AEEC 2WDVD 2WQYD 3AE5C 3AE7D 3AE2D 3AE6C 1YQ3C 4YSXD 3SFEC 3AEFC 4KX6D 2ACZD 3VRAC 1E7PC 3P4SD 3AEAC 3VONA 1L0VC 3AE8D 3SFDC 4YTMD 3P4PC 2FBWC 1KF6C 2BS4C 4YT0C 1NEND 4DHJA 4DHZA 3AEDD 1KFYD 3SFDD 3AE4D 3AECC 1ZP0C 5C2TD 4YXDD 4YTNC 2WU2D
chains in the Genus database with same CATH topology
2H88C 3ABVC 3AE3D 4YTPD 2WP9C 2WU5C 3AEED 3AECD 3AE5D 3VR8C 4YTND 3AE6D 1YQ3D 2WS3C 3SFED 3AEFD 1NEKC 3VRBC 3P4RC 3VRAD 2WDRC 3AE9C 3AEAD 3AEBC 1L0VD 3P4QC 3VR9C 1NEKD 1ZOYC 3P4PD 2FBWD 1KF6D 4YSZC 4YT0D 2B76C 4YSYC 2WDQC 5C3JC 3AE1C 1YQ4C 1ZP0D 3CIRD 2H88D 2WDVC 3ABVD 3AE7C 3AE2C 4YSXC 2WP9D 2WU5D 3VR8D 3AEGC 4KX6C 2WS3D 2ACZC 3P4SC 3VRBD 3P4RD 3AE8C 2WDRD 3AEGD 2BS3C 3AE9D 4YTMC 3AEBD 3P4QD 3VR9D 1NENC 1ZOYD 3AEDC 2H89C 4YSZD 1KFYC 3CIRC 3AE4C 2BS2C 5C2TC 2WQYC 2B76D 4YXDC 4YSYD 2WU2C 2WDQD 2H89D 3AE3C 5C3JD 3AE1D 4YTPC 1YQ4D 1QLBC 3AEEC 2WDVD 2WQYD 3AE5C 3AE7D 3AE2D 3AE6C 1YQ3C 4YSXD 3SFEC 3AEFC 4KX6D 2ACZD 3VRAC 1E7PC 3P4SD 3AEAC 1L0VC 3AE8D 3SFDC 4YTMD 3P4PC 2FBWC 1KF6C 2BS4C 4YT0C 1NEND 3AEDD 1KFYD 3SFDD 3AE4D 3AECC 1ZP0C 5C2TD 4YXDD 4YTNC 2WU2D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H88 C;  3ABV C;  3AE3 D;  4YTP D;  2WP9 C;  2WU5 C;  3AEE D;  3AEC D;  3AE5 D;  3VR8 C;  4YTN D;  3AE6 D;  1YQ3 D;  2WS3 C;  3SFE D;  3AEF D;  1NEK C;  3VRB C;  3P4R C;  3VRA D;  2WDR C;  3AE9 C;  3AEA D;  3AEB C;  1L0V D;  3P4Q C;  3VR9 C;  1NEK D;  1ZOY C;  3P4P D;  2FBW D;  1KF6 D;  4YSZ C;  4YT0 D;  2B76 C;  4YSY C;  2WDQ C;  5C3J C;  3AE1 C;  1YQ4 C;  1ZP0 D;  3CIR D;  2H88 D;  2WDV C;  3ABV D;  3AE7 C;  3AE2 C;  4YSX C;  2WP9 D;  2WU5 D;  3VR8 D;  3AEG C;  4KX6 C;  2WS3 D;  2ACZ C;  3P4S C;  3VRB D;  3P4R D;  3AE8 C;  2WDR D;  3AEG D;  2BS3 C;  3AE9 D;  4YTM C;  3AEB D;  3P4Q D;  3VR9 D;  1NEN C;  1ZOY D;  3AED C;  2H89 C;  4YSZ D;  1KFY C;  3CIR C;  3AE4 C;  2BS2 C;  5C2T C;  2WQY C;  2B76 D;  4YXD C;  4YSY D;  2WU2 C;  2WDQ D;  2H89 D;  3AE3 C;  5C3J D;  3AE1 D;  4YTP C;  1YQ4 D;  1QLB C;  3AEE C;  2WDV D;  2WQY D;  3AE5 C;  3AE7 D;  3AE2 D;  3AE6 C;  1YQ3 C;  4YSX D;  3SFE C;  3AEF C;  4KX6 D;  2ACZ D;  3VRA C;  1E7P C;  3P4S D;  3AEA C;  1L0V C;  3AE8 D;  3SFD C;  4YTM D;  3P4P C;  2FBW C;  1KF6 C;  2BS4 C;  4YT0 C;  1NEN D;  3AED D;  1KFY D;  3SFD D;  3AE4 D;  3AEC C;  1ZP0 C;  5C2T D;  4YXD D;  4YTN C;  2WU2 D; 
#chains in the Genus database with same CATH topology
 1TFF A;  2H88 C;  2ZFY A;  3ABV C;  3AE3 D;  4YTP D;  2WP9 C;  2WU5 C;  3AEE D;  3AEC D;  3AE5 D;  3VR8 C;  4YTN D;  4FJV A;  3AE6 D;  1YQ3 D;  2WS3 C;  3SFE D;  3AEF D;  1NEK C;  3VRB C;  3P4R C;  3VRA D;  2WDR C;  3AE9 C;  3AEA D;  3AEB C;  1L0V D;  3P4Q C;  3VR9 C;  1NEK D;  1ZOY C;  3P4P D;  2FBW D;  1KF6 D;  4YSZ C;  4YT0 D;  4DDI A;  2B76 C;  4YSY C;  2WDQ C;  4LDT A;  4DDG A;  5C3J C;  3AE1 C;  1YQ4 C;  1ZP0 D;  3CIR D;  2H88 D;  2WDV C;  3ABV D;  3AE7 C;  3AE2 C;  4YSX C;  2WP9 D;  2WU5 D;  3VR8 D;  3AEG C;  4KX6 C;  2WS3 D;  2ACZ C;  3P4S C;  3VRB D;  3P4R D;  3AE8 C;  2WDR D;  3AEG D;  2BS3 C;  3AE9 D;  4YTM C;  3AEB D;  3P4Q D;  3VR9 D;  4I6L A;  1NEN C;  1ZOY D;  4DHI B;  3AED C;  2H89 C;  4YSZ D;  1KFY C;  3CIR C;  3AE4 C;  2BS2 C;  5C2T C;  2WQY C;  2B76 D;  4YXD C;  4YSY D;  2WU2 C;  2WDQ D;  2H89 D;  3AE3 C;  5C3J D;  3AE1 D;  4YTP C;  1YQ4 D;  1QLB C;  3AEE C;  2WDV D;  2WQY D;  3AE5 C;  3AE7 D;  3AE2 D;  3AE6 C;  1YQ3 C;  4YSX D;  3SFE C;  3AEF C;  4KX6 D;  2ACZ D;  3VRA C;  1E7P C;  3P4S D;  3AEA C;  3VON A;  1L0V C;  3AE8 D;  3SFD C;  4YTM D;  3P4P C;  2FBW C;  1KF6 C;  2BS4 C;  4YT0 C;  1NEN D;  4DHJ A;  4DHZ A;  3AED D;  1KFY D;  3SFD D;  3AE4 D;  3AEC C;  1ZP0 C;  5C2T D;  4YXD D;  4YTN C;  2WU2 D; 
#chains in the Genus database with same CATH homology
 2H88 C;  3ABV C;  3AE3 D;  4YTP D;  2WP9 C;  2WU5 C;  3AEE D;  3AEC D;  3AE5 D;  3VR8 C;  4YTN D;  3AE6 D;  1YQ3 D;  2WS3 C;  3SFE D;  3AEF D;  1NEK C;  3VRB C;  3P4R C;  3VRA D;  2WDR C;  3AE9 C;  3AEA D;  3AEB C;  1L0V D;  3P4Q C;  3VR9 C;  1NEK D;  1ZOY C;  3P4P D;  2FBW D;  1KF6 D;  4YSZ C;  4YT0 D;  2B76 C;  4YSY C;  2WDQ C;  5C3J C;  3AE1 C;  1YQ4 C;  1ZP0 D;  3CIR D;  2H88 D;  2WDV C;  3ABV D;  3AE7 C;  3AE2 C;  4YSX C;  2WP9 D;  2WU5 D;  3VR8 D;  3AEG C;  4KX6 C;  2WS3 D;  2ACZ C;  3P4S C;  3VRB D;  3P4R D;  3AE8 C;  2WDR D;  3AEG D;  2BS3 C;  3AE9 D;  4YTM C;  3AEB D;  3P4Q D;  3VR9 D;  1NEN C;  1ZOY D;  3AED C;  2H89 C;  4YSZ D;  1KFY C;  3CIR C;  3AE4 C;  2BS2 C;  5C2T C;  2WQY C;  2B76 D;  4YXD C;  4YSY D;  2WU2 C;  2WDQ D;  2H89 D;  3AE3 C;  5C3J D;  3AE1 D;  4YTP C;  1YQ4 D;  1QLB C;  3AEE C;  2WDV D;  2WQY D;  3AE5 C;  3AE7 D;  3AE2 D;  3AE6 C;  1YQ3 C;  4YSX D;  3SFE C;  3AEF C;  4KX6 D;  2ACZ D;  3VRA C;  1E7P C;  3P4S D;  3AEA C;  1L0V C;  3AE8 D;  3SFD C;  4YTM D;  3P4P C;  2FBW C;  1KF6 C;  2BS4 C;  4YT0 C;  1NEN D;  3AED D;  1KFY D;  3SFD D;  3AE4 D;  3AEC C;  1ZP0 C;  5C2T D;  4YXD D;  4YTN C;  2WU2 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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