4Z42B

Crystal structure of urease from yersinia enterocolitica
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
114
structure length
114
Chain Sequence
NTPLGGCILADTPITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPFGGKQTLYGFNNLVDGWTGEGVVPNSERPD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Urease subunit gamma
publication title Crystal structure of urease from Yersinia enterocolitica
rcsb
total genus 7
structure length 114
sequence length 114
chains with identical sequence E, H, K
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2015-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 4z42B00
4G7EB 1FWEB 1EJSB 4UBPB 1A5KB 1E9ZA 1FWDB 1FWCB 4EP8B 1S3TB 1FWIB 3LA4A 3UBPB 1FWFB 1EJXB 1FWGB 4EPDB 1UBPB 1FWBB 3QGKA 4EPBB 1FWAB 4Z42B 1A5MB 4CEUB 1EJUB 5G4HB 1EJRB 1FWHB 4GOAA 4EPEB 4H9MA 1KRCB 5A6TB 2UBPB 1EJWB 4CEXB 1KRBB 5FSEB 1EJVB 1A5OB 2KAUB 1E9YA 1A5LB 1IE7B 4G7EA 4GY7A 1EJTB 5FSDB 4AC7B 3QGAA 1KRAB 1EF2B 1A5NB 1FWJB
chains in the Genus database with same CATH superfamily
4G7EB 1FWEB 1EJSB 4UBPB 1A5KB 1E9ZA 1FWDB 1FWCB 4EP8B 1S3TB 1FWIB 3LA4A 3UBPB 1FWFB 1EJXB 1FWGB 4EPDB 1UBPB 1FWBB 3QGKA 4EPBB 1FWAB 4Z42B 1A5MB 4CEUB 1EJUB 5G4HB 1EJRB 1FWHB 4GOAA 4EPEB 4H9MA 1KRCB 5A6TB 2UBPB 1EJWB 4CEXB 1KRBB 5FSEB 1EJVB 1A5OB 2KAUB 1E9YA 1A5LB 1IE7B 4G7EA 4GY7A 1EJTB 5FSDB 4AC7B 3QGAA 1KRAB 1EF2B 1A5NB 1FWJB
chains in the Genus database with same CATH topology
4G7EB 1FWEB 1EJSB 4UBPB 1A5KB 1E9ZA 1FWDB 1FWCB 4EP8B 1S3TB 1FWIB 3LA4A 3UBPB 1FWFB 1EJXB 1FWGB 4EPDB 1UBPB 1FWBB 3QGKA 4EPBB 1FWAB 4Z42B 1A5MB 4CEUB 1EJUB 5G4HB 1EJRB 1FWHB 4GOAA 4EPEB 4H9MA 1KRCB 5A6TB 2UBPB 1EJWB 4CEXB 1KRBB 5FSEB 1EJVB 1A5OB 2KAUB 1E9YA 1A5LB 1IE7B 4G7EA 4GY7A 1EJTB 5FSDB 4AC7B 3QGAA 1KRAB 1EF2B 1A5NB 1FWJB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G7E B;  1FWE B;  1EJS B;  4UBP B;  1A5K B;  1E9Z A;  1FWD B;  1FWC B;  4EP8 B;  1S3T B;  1FWI B;  3LA4 A;  3UBP B;  1FWF B;  1EJX B;  1FWG B;  4EPD B;  1UBP B;  1FWB B;  3QGK A;  4EPB B;  1FWA B;  4Z42 B;  1A5M B;  4CEU B;  1EJU B;  5G4H B;  1EJR B;  1FWH B;  4GOA A;  4EPE B;  4H9M A;  1KRC B;  5A6T B;  2UBP B;  1EJW B;  4CEX B;  1KRB B;  5FSE B;  1EJV B;  1A5O B;  2KAU B;  1E9Y A;  1A5L B;  1IE7 B;  4G7E A;  4GY7 A;  1EJT B;  5FSD B;  4AC7 B;  3QGA A;  1KRA B;  1EF2 B;  1A5N B;  1FWJ B; 
#chains in the Genus database with same CATH topology
 4G7E B;  1FWE B;  1EJS B;  4UBP B;  1A5K B;  1E9Z A;  1FWD B;  1FWC B;  4EP8 B;  1S3T B;  1FWI B;  3LA4 A;  3UBP B;  1FWF B;  1EJX B;  1FWG B;  4EPD B;  1UBP B;  1FWB B;  3QGK A;  4EPB B;  1FWA B;  4Z42 B;  1A5M B;  4CEU B;  1EJU B;  5G4H B;  1EJR B;  1FWH B;  4GOA A;  4EPE B;  4H9M A;  1KRC B;  5A6T B;  2UBP B;  1EJW B;  4CEX B;  1KRB B;  5FSE B;  1EJV B;  1A5O B;  2KAU B;  1E9Y A;  1A5L B;  1IE7 B;  4G7E A;  4GY7 A;  1EJT B;  5FSD B;  4AC7 B;  3QGA A;  1KRA B;  1EF2 B;  1A5N B;  1FWJ B; 
#chains in the Genus database with same CATH homology
 4G7E B;  1FWE B;  1EJS B;  4UBP B;  1A5K B;  1E9Z A;  1FWD B;  1FWC B;  4EP8 B;  1S3T B;  1FWI B;  3LA4 A;  3UBP B;  1FWF B;  1EJX B;  1FWG B;  4EPD B;  1UBP B;  1FWB B;  3QGK A;  4EPB B;  1FWA B;  4Z42 B;  1A5M B;  4CEU B;  1EJU B;  5G4H B;  1EJR B;  1FWH B;  4GOA A;  4EPE B;  4H9M A;  1KRC B;  5A6T B;  2UBP B;  1EJW B;  4CEX B;  1KRB B;  5FSE B;  1EJV B;  1A5O B;  2KAU B;  1E9Y A;  1A5L B;  1IE7 B;  4G7E A;  4GY7 A;  1EJT B;  5FSD B;  4AC7 B;  3QGA A;  1KRA B;  1EF2 B;  1A5N B;  1FWJ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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