The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
sequence length |
166
|
structure length |
160
|
Chain Sequence |
b'SIMKILLIGDVGVGKSCLLVRFVEDKFNPGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
New insights into the molecular mechanism of the Rab GTPase Sec4p activation.
pubmed doi rcsb |
| molecule keywords |
Ras-related protein SEC4
|
| source organism |
Saccharomyces cerevisiae (strain atcc 204508 / s288c)
|
| molecule tags |
Gtp binding protein
|
| total genus |
50
|
| structure length |
160
|
| sequence length |
166
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2015-04-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00071 | Ras | Ras family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |
