4ZBNA

Non-helical dna triplex forms a unique aptamer scaffold for high affinity recognition of nerve growth factor
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
104
structure length
97
Chain Sequence
EFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNISVFKQYFFETKCRDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system/dna
molecule keywords DNA (28-MER)
publication title Non-helical DNA Triplex Forms a Unique Aptamer Scaffold for High Affinity Recognition of Nerve Growth Factor.
pubmed doi rcsb
source organism Homo sapiens
total genus 15
structure length 97
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00243 NGF Nerve growth factor family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 4zbnA00
4MPLA 1TFGA 4UHZA 5JZ7A 5HHDA 3BDYV 1DZ7A 1FZVA 4HQXA 1KTZA 4MQWB 1JPYA 1TZHV 1B8KA 4X1JA 4HQUA 3BUKA 1REWA 2GOOA 4ZBNA 5FV2V 1NYSB 4UHYA 2H62A 2QJBA 5AEJA 4HSAA 1TGKA 2X1WA 3QB4A 4HR9A 1B98A 4EFVA 2GYZA 4QCIC 1AOCA 1MKGA 3E07A 3SEKB 4WPBA 2GNNA 1VPPV 1LXIA 1WQ8A 1B8MB 1VPFA 2P6AA 2H64A 2VXSA 2BHKA 4GLSE 2PJYA 4MIDA 4EDXV 3RJRA 3EVSB 2KD3A 1B8MA 5HI3A 2R52A 2V5EB 1HD4A 2GH0C 2QCQA 4LXSJ 4EDWV 1S4YB 3S1KV 1TGJA 4XPJA 4BV4L 1QFWA 4EC7A 1RV6V 2FJHV 3V2AA 5F3BC 4EAXA 4QHUC 4FAOA 3KFDA 1AGQA 1BNDA 1BJ1V 1SG1A 1WQ9B 5HHCA 5FV1V 3BMPA 2ARVA 1HRPA 1XWDB 2X1XE 1MJVA 3QTKA 1BETA 2C7WA 1WQ9A 1BMPA 1KLAA 2FJGV 5HK5E 1XWDA 1QTYR 4KV5A 4ZFFC 1BTGA 1QFWB 4UI1A 1FL7A 3IJ2A 5BQ8A 1PDGA 5BQEA 1BNDB 1E9JA 4YCGC 4GLNE 1HRPB 1WWWV 2ARPA 2XACA 2TGIA 4N1DA 3EO1C 5HHXA 2QJAA 3S1BV 4AY9A 5E4GA 1CZ8V 3MJGA 2VWEA 4LXRJ 1KATW 1ZKZA 1REUA 1LX5A 2IFGE 1HCNA 3MJKA 4UI2B 2QR0C 4QAFC 4UI0A 1NYUB 2GYRA 5BQBA 1TZIV 1M4UL 4KZNA 1FL7B 5BQ8B 5HI4A 5BQEB 1M4UA 2QCWA 5HK5A 3B4VA 1WAQA 5BPUA 1ES7A 1KLCA 4MQWA 3FUBB 2XV7A 5HHVA 3BK3A 1HCFA 4YCIC 2QJ9A 4AY9B 3JVFA 5HI5A 5BQ8D 1FLTV 5BQCA 2R53A 1SGFB 5F3HI 1MKKA 3HH2A 2ASKA 2VPFA 3V6BA 1HCNB 4KXZA 1NT3A 3P9WA 2B0UA
chains in the Genus database with same CATH superfamily
4MPLA 1TFGA 4UHZA 5JZ7A 5HHDA 3BDYV 1DZ7A 1FZVA 4HQXA 1KTZA 4MQWB 1JPYA 1TZHV 1B8KA 4X1JA 4HQUA 3BUKA 1REWA 2GOOA 4ZBNA 5FV2V 1NYSB 4UHYA 2H62A 2QJBA 5AEJA 4HSAA 1TGKA 2X1WA 3QB4A 4HR9A 1B98A 4EFVA 2GYZA 4QCIC 1AOCA 1MKGA 3E07A 3SEKB 4WPBA 2GNNA 1VPPV 1LXIA 1WQ8A 1B8MB 1VPFA 2P6AA 2H64A 2VXSA 2BHKA 4GLSE 2PJYA 4MIDA 4EDXV 3RJRA 3EVSB 2KD3A 1B8MA 5HI3A 2R52A 2V5EB 1HD4A 2GH0C 2QCQA 4LXSJ 4EDWV 1S4YB 3S1KV 1TGJA 4XPJA 4BV4L 1QFWA 4EC7A 1RV6V 2FJHV 3V2AA 5F3BC 4EAXA 4QHUC 4FAOA 3KFDA 1AGQA 1BNDA 1BJ1V 1SG1A 1WQ9B 5HHCA 5FV1V 3BMPA 2ARVA 1HRPA 1XWDB 2X1XE 1MJVA 3QTKA 1BETA 2C7WA 1WQ9A 1BMPA 1KLAA 2FJGV 5HK5E 1XWDA 1QTYR 4KV5A 4ZFFC 1BTGA 1QFWB 4UI1A 1FL7A 3IJ2A 5BQ8A 1PDGA 5BQEA 1BNDB 1E9JA 4YCGC 4GLNE 1HRPB 1WWWV 2ARPA 2XACA 2TGIA 4N1DA 3EO1C 5HHXA 2QJAA 3S1BV 4AY9A 5E4GA 1CZ8V 3MJGA 2VWEA 4LXRJ 1KATW 1ZKZA 1REUA 1LX5A 2IFGE 1HCNA 3MJKA 4UI2B 2QR0C 4QAFC 4UI0A 1NYUB 2GYRA 5BQBA 1TZIV 1M4UL 4KZNA 1FL7B 5BQ8B 5HI4A 5BQEB 1M4UA 2QCWA 5HK5A 3B4VA 1WAQA 5BPUA 1ES7A 1KLCA 4MQWA 3FUBB 2XV7A 5HHVA 3BK3A 1HCFA 4YCIC 2QJ9A 4AY9B 3JVFA 5HI5A 5BQ8D 1FLTV 5BQCA 2R53A 1SGFB 5F3HI 1MKKA 3HH2A 2ASKA 2VPFA 3V6BA 1HCNB 4KXZA 1NT3A 3P9WA 2B0UA
chains in the Genus database with same CATH topology
4MPLA 1TFGA 4UHZA 5JZ7A 5HHDA 3BDYV 1DZ7A 1FZVA 4HQXA 1KTZA 4MQWB 1JPYA 1TZHV 1B8KA 4X1JA 4HQUA 3BUKA 1REWA 2GOOA 4ZBNA 5FV2V 1NYSB 4UHYA 2H62A 2QJBA 5AEJA 4HSAA 1TGKA 2X1WA 3QB4A 4HR9A 1B98A 4EFVA 2GYZA 4QCIC 1AOCA 1MKGA 3E07A 3SEKB 4WPBA 2GNNA 1VPPV 1LXIA 1WQ8A 1B8MB 1VPFA 2P6AA 2H64A 2VXSA 2BHKA 4GLSE 2PJYA 4MIDA 4EDXV 3RJRA 3EVSB 2KD3A 1B8MA 5HI3A 2R52A 2V5EB 1HD4A 2GH0C 2QCQA 4LXSJ 4EDWV 1S4YB 3S1KV 1TGJA 4XPJA 4BV4L 1QFWA 4EC7A 1RV6V 2FJHV 3V2AA 5F3BC 4EAXA 4QHUC 4FAOA 3KFDA 1AGQA 1BNDA 1BJ1V 1SG1A 1WQ9B 5HHCA 5FV1V 3BMPA 2ARVA 1HRPA 1XWDB 2X1XE 1MJVA 3QTKA 1BETA 2C7WA 1WQ9A 1BMPA 1KLAA 2FJGV 5HK5E 1XWDA 1QTYR 4KV5A 4ZFFC 1BTGA 1QFWB 4UI1A 1FL7A 3IJ2A 5BQ8A 1PDGA 5BQEA 1BNDB 1E9JA 4YCGC 4GLNE 1HRPB 1WWWV 2ARPA 2XACA 2TGIA 4N1DA 3EO1C 5HHXA 2QJAA 3S1BV 4AY9A 5E4GA 1CZ8V 3MJGA 2VWEA 4LXRJ 1KATW 1ZKZA 1REUA 1LX5A 2IFGE 1HCNA 3MJKA 4UI2B 2QR0C 4QAFC 4UI0A 1NYUB 2GYRA 5BQBA 1TZIV 1M4UL 4KZNA 1FL7B 5BQ8B 5HI4A 5BQEB 1M4UA 2QCWA 5HK5A 3B4VA 1WAQA 5BPUA 1ES7A 1KLCA 4MQWA 3FUBB 2XV7A 5HHVA 3BK3A 1HCFA 4YCIC 2QJ9A 4AY9B 3JVFA 5HI5A 5BQ8D 1FLTV 5BQCA 2R53A 1SGFB 5F3HI 1MKKA 3HH2A 2ASKA 2VPFA 3V6BA 1HCNB 4KXZA 1NT3A 3P9WA 2B0UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MPL A;  1TFG A;  4UHZ A;  5JZ7 A;  5HHD A;  3BDY V;  1DZ7 A;  1FZV A;  4HQX A;  1KTZ A;  4MQW B;  1JPY A;  1TZH V;  1B8K A;  4X1J A;  4HQU A;  3BUK A;  1REW A;  2GOO A;  4ZBN A;  5FV2 V;  1NYS B;  4UHY A;  2H62 A;  2QJB A;  5AEJ A;  4HSA A;  1TGK A;  2X1W A;  3QB4 A;  4HR9 A;  1B98 A;  4EFV A;  2GYZ A;  4QCI C;  1AOC A;  1MKG A;  3E07 A;  3SEK B;  4WPB A;  2GNN A;  1VPP V;  1LXI A;  1WQ8 A;  1B8M B;  1VPF A;  2P6A A;  2H64 A;  2VXS A;  2BHK A;  4GLS E;  2PJY A;  4MID A;  4EDX V;  3RJR A;  3EVS B;  2KD3 A;  1B8M A;  5HI3 A;  2R52 A;  2V5E B;  1HD4 A;  2GH0 C;  2QCQ A;  4LXS J;  4EDW V;  1S4Y B;  3S1K V;  1TGJ A;  4XPJ A;  4BV4 L;  1QFW A;  4EC7 A;  1RV6 V;  2FJH V;  3V2A A;  5F3B C;  4EAX A;  4QHU C;  4FAO A;  3KFD A;  1AGQ A;  1BND A;  1BJ1 V;  1SG1 A;  1WQ9 B;  5HHC A;  5FV1 V;  3BMP A;  2ARV A;  1HRP A;  1XWD B;  2X1X E;  1MJV A;  3QTK A;  1BET A;  2C7W A;  1WQ9 A;  1BMP A;  1KLA A;  2FJG V;  5HK5 E;  1XWD A;  1QTY R;  4KV5 A;  4ZFF C;  1BTG A;  1QFW B;  4UI1 A;  1FL7 A;  3IJ2 A;  5BQ8 A;  1PDG A;  5BQE A;  1BND B;  1E9J A;  4YCG C;  4GLN E;  1HRP B;  1WWW V;  2ARP A;  2XAC A;  2TGI A;  4N1D A;  3EO1 C;  5HHX A;  2QJA A;  3S1B V;  4AY9 A;  5E4G A;  1CZ8 V;  3MJG A;  2VWE A;  4LXR J;  1KAT W;  1ZKZ A;  1REU A;  1LX5 A;  2IFG E;  1HCN A;  3MJK A;  4UI2 B;  2QR0 C;  4QAF C;  4UI0 A;  1NYU B;  2GYR A;  5BQB A;  1TZI V;  1M4U L;  4KZN A;  1FL7 B;  5BQ8 B;  5HI4 A;  5BQE B;  1M4U A;  2QCW A;  5HK5 A;  3B4V A;  1WAQ A;  5BPU A;  1ES7 A;  1KLC A;  4MQW A;  3FUB B;  2XV7 A;  5HHV A;  3BK3 A;  1HCF A;  4YCI C;  2QJ9 A;  4AY9 B;  3JVF A;  5HI5 A;  5BQ8 D;  1FLT V;  5BQC A;  2R53 A;  1SGF B;  5F3H I;  1MKK A;  3HH2 A;  2ASK A;  2VPF A;  3V6B A;  1HCN B;  4KXZ A;  1NT3 A;  3P9W A;  2B0U A; 
#chains in the Genus database with same CATH topology
 4MPL A;  1TFG A;  4UHZ A;  5JZ7 A;  5HHD A;  3BDY V;  1DZ7 A;  1FZV A;  4HQX A;  1KTZ A;  4MQW B;  1JPY A;  1TZH V;  1B8K A;  4X1J A;  4HQU A;  3BUK A;  1REW A;  2GOO A;  4ZBN A;  5FV2 V;  1NYS B;  4UHY A;  2H62 A;  2QJB A;  5AEJ A;  4HSA A;  1TGK A;  2X1W A;  3QB4 A;  4HR9 A;  1B98 A;  4EFV A;  2GYZ A;  4QCI C;  1AOC A;  1MKG A;  3E07 A;  3SEK B;  4WPB A;  2GNN A;  1VPP V;  1LXI A;  1WQ8 A;  1B8M B;  1VPF A;  2P6A A;  2H64 A;  2VXS A;  2BHK A;  4GLS E;  2PJY A;  4MID A;  4EDX V;  3RJR A;  3EVS B;  2KD3 A;  1B8M A;  5HI3 A;  2R52 A;  2V5E B;  1HD4 A;  2GH0 C;  2QCQ A;  4LXS J;  4EDW V;  1S4Y B;  3S1K V;  1TGJ A;  4XPJ A;  4BV4 L;  1QFW A;  4EC7 A;  1RV6 V;  2FJH V;  3V2A A;  5F3B C;  4EAX A;  4QHU C;  4FAO A;  3KFD A;  1AGQ A;  1BND A;  1BJ1 V;  1SG1 A;  1WQ9 B;  5HHC A;  5FV1 V;  3BMP A;  2ARV A;  1HRP A;  1XWD B;  2X1X E;  1MJV A;  3QTK A;  1BET A;  2C7W A;  1WQ9 A;  1BMP A;  1KLA A;  2FJG V;  5HK5 E;  1XWD A;  1QTY R;  4KV5 A;  4ZFF C;  1BTG A;  1QFW B;  4UI1 A;  1FL7 A;  3IJ2 A;  5BQ8 A;  1PDG A;  5BQE A;  1BND B;  1E9J A;  4YCG C;  4GLN E;  1HRP B;  1WWW V;  2ARP A;  2XAC A;  2TGI A;  4N1D A;  3EO1 C;  5HHX A;  2QJA A;  3S1B V;  4AY9 A;  5E4G A;  1CZ8 V;  3MJG A;  2VWE A;  4LXR J;  1KAT W;  1ZKZ A;  1REU A;  1LX5 A;  2IFG E;  1HCN A;  3MJK A;  4UI2 B;  2QR0 C;  4QAF C;  4UI0 A;  1NYU B;  2GYR A;  5BQB A;  1TZI V;  1M4U L;  4KZN A;  1FL7 B;  5BQ8 B;  5HI4 A;  5BQE B;  1M4U A;  2QCW A;  5HK5 A;  3B4V A;  1WAQ A;  5BPU A;  1ES7 A;  1KLC A;  4MQW A;  3FUB B;  2XV7 A;  5HHV A;  3BK3 A;  1HCF A;  4YCI C;  2QJ9 A;  4AY9 B;  3JVF A;  5HI5 A;  5BQ8 D;  1FLT V;  5BQC A;  2R53 A;  1SGF B;  5F3H I;  1MKK A;  3HH2 A;  2ASK A;  2VPF A;  3V6B A;  1HCN B;  4KXZ A;  1NT3 A;  3P9W A;  2B0U A; 
#chains in the Genus database with same CATH homology
 4MPL A;  1TFG A;  4UHZ A;  5JZ7 A;  5HHD A;  3BDY V;  1DZ7 A;  1FZV A;  4HQX A;  1KTZ A;  4MQW B;  1JPY A;  1TZH V;  1B8K A;  4X1J A;  4HQU A;  3BUK A;  1REW A;  2GOO A;  4ZBN A;  5FV2 V;  1NYS B;  4UHY A;  2H62 A;  2QJB A;  5AEJ A;  4HSA A;  1TGK A;  2X1W A;  3QB4 A;  4HR9 A;  1B98 A;  4EFV A;  2GYZ A;  4QCI C;  1AOC A;  1MKG A;  3E07 A;  3SEK B;  4WPB A;  2GNN A;  1VPP V;  1LXI A;  1WQ8 A;  1B8M B;  1VPF A;  2P6A A;  2H64 A;  2VXS A;  2BHK A;  4GLS E;  2PJY A;  4MID A;  4EDX V;  3RJR A;  3EVS B;  2KD3 A;  1B8M A;  5HI3 A;  2R52 A;  2V5E B;  1HD4 A;  2GH0 C;  2QCQ A;  4LXS J;  4EDW V;  1S4Y B;  3S1K V;  1TGJ A;  4XPJ A;  4BV4 L;  1QFW A;  4EC7 A;  1RV6 V;  2FJH V;  3V2A A;  5F3B C;  4EAX A;  4QHU C;  4FAO A;  3KFD A;  1AGQ A;  1BND A;  1BJ1 V;  1SG1 A;  1WQ9 B;  5HHC A;  5FV1 V;  3BMP A;  2ARV A;  1HRP A;  1XWD B;  2X1X E;  1MJV A;  3QTK A;  1BET A;  2C7W A;  1WQ9 A;  1BMP A;  1KLA A;  2FJG V;  5HK5 E;  1XWD A;  1QTY R;  4KV5 A;  4ZFF C;  1BTG A;  1QFW B;  4UI1 A;  1FL7 A;  3IJ2 A;  5BQ8 A;  1PDG A;  5BQE A;  1BND B;  1E9J A;  4YCG C;  4GLN E;  1HRP B;  1WWW V;  2ARP A;  2XAC A;  2TGI A;  4N1D A;  3EO1 C;  5HHX A;  2QJA A;  3S1B V;  4AY9 A;  5E4G A;  1CZ8 V;  3MJG A;  2VWE A;  4LXR J;  1KAT W;  1ZKZ A;  1REU A;  1LX5 A;  2IFG E;  1HCN A;  3MJK A;  4UI2 B;  2QR0 C;  4QAF C;  4UI0 A;  1NYU B;  2GYR A;  5BQB A;  1TZI V;  1M4U L;  4KZN A;  1FL7 B;  5BQ8 B;  5HI4 A;  5BQE B;  1M4U A;  2QCW A;  5HK5 A;  3B4V A;  1WAQ A;  5BPU A;  1ES7 A;  1KLC A;  4MQW A;  3FUB B;  2XV7 A;  5HHV A;  3BK3 A;  1HCF A;  4YCI C;  2QJ9 A;  4AY9 B;  3JVF A;  5HI5 A;  5BQ8 D;  1FLT V;  5BQC A;  2R53 A;  1SGF B;  5F3H I;  1MKK A;  3HH2 A;  2ASK A;  2VPF A;  3V6B A;  1HCN B;  4KXZ A;  1NT3 A;  3P9W A;  2B0U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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