4ZIGA

Crystal structure of core/latch dimer of bax in complex with bidbh3mini
Total Genus 58
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
157
structure length
152
Chain Sequence
GGGPTSSEQIMKTGALLLQGFIQDRAGAPELALDPVPQDASTKKLSESLKRIGDELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLKALSTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Apoptosis
molecule keywords Apoptosis regulator BAX
publication title Crystal structure of Bax bound to the BH3 peptide of Bim identifies important contacts for interaction.
pubmed doi rcsb
source organism Homo sapiens
total genus 58
structure length 152
sequence length 157
ec nomenclature
pdb deposition date 2015-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 4zigA00
4BPIA 1WSXA 5KTGA 2BIDA 3PK1A 1YSWA 4ZIFA 4BD2A 4U2UA 4WMRA 3KJ0A 4YK9A 5FDOA 4S0OA 1PQ0A 4ZBFA 1YSGA 4ZEQA 5IEZA 3IIHA 1OHUA 5IF4A 1R2EA 2JM6B 5C6HA 4G35A 2A5YA 5FC4A 2ROCA 3IO9A 4ZIHA 3IIGA 1AF3A 1MK3A 3DVUA 4ZIIA 3KJ1A 4BD7A 2VM6A 3I1HA 5FDRA 1R2DA 2W3LA 2V6QA 4MI8A 4HW3A 2VOGA 1DDBA 5C3FA 1LXLA 4BDUA 2VOFA 2MHSA 3ILCA 2VOHA 1GJHA 2O21A 2O2FA 5KU9A 3MQPA 4ZBIA 2JCNA 2IMTA 2IMSA 2M5BA 2MEJA 3IHCA 4ZIEA 2YV6A 2BZWA 4HW4A 1R2GA 2O22A 2K7WA 2KBWA 1G5JA 4OQ5A 4YJ4A 3WIXA 2O2NA 1R2IA 4S0PA 3CVAX 1R2HA 2XPXA 4BD8A 5FMIA 3BL2A 3QBRA 2RODA 1O0LA 3MK8A 2PQKA 2B48A 2LR1A 5JSBA 3D7VA 3KZ0A 4BD6A 2ABOA 4QVXA 2XA0A 3WIYA 1PQ1A 1Q59A 1TY4A 4HW2A 2NLAA 4K5BC 2WH6A 1YSNA 4OYDA 2VOIA 3IHDA 1G5MA 1YSIA 4QNQA 1BXLA 3IHEA 1F16A 4U2VA 4B4SA 1ZY3A 2NL9A 1MAZA 2ME8A 2KUAA 1K3KA 3KJ2A 4BPJA 4ZIGA 2O2MA 4OQ6A
chains in the Genus database with same CATH superfamily
4BPIA 1WSXA 5KTGA 3JRVA 2BIDA 3PK1A 1YSWA 4ZIFA 4BD2A 4U2UA 4WMRA 3KJ0A 4YK9A 5FDOA 4S0OA 1PQ0A 4ZBFA 1YSGA 4ZEQA 5IEZA 3IIHA 1OHUA 5IF4A 1R2EA 2JM6B 5C6HA 2K36A 2VTYA 4G35A 2A5YA 4LQKA 4UF3A 5FC4A 2ROCA 3IO9A 4ZIHA 4BBDA 3IIGA 1AF3A 1MK3A 3DVUA 4ZIIA 3KJ1A 4BD7A 2VM6A 3I1HA 5FDRA 1R2DA 2W3LA 2V6QA 4MI8A 4HW3A 2VOGA 1DDBA 5C3FA 1LXLA 4BDUA 2VOFA 2MHSA 3ILCA 2VOHA 1GJHA 2O21A 2O2FA 2VVYA 4UF1A 5KU9A 3MQPA 4ZBIA 2JCNA 2IMTA 2IMSA 2M5BA 2MEJA 3IHCA 4ZIEA 2YV6A 2BZWA 4HW4A 1R2GA 2O22A 2UXEA 2K7WA 2KBWA 1G5JA 4OQ5A 4YJ4A 3WIXA 2O2NA 2I39A 1R2IA 4S0PA 4BBCA 3CVAX 1R2HA 2XPXA 4BD8A 5FMIA 3BL2A 3QBRA 2RODA 1O0LA 3MK8A 2PQKA 2B48A 2VVWA 2LR1A 5JSBA 3D7VA 2JBYA 3KZ0A 4BD6A 2ABOA 4QVXA 2XA0A 3WIYA 1PQ1A 2VVXA 1Q59A 1TY4A 4HW2A 2JBXA 2NLAA 4K5BC 4D2MA 4D2LA 2WH6A 1YSNA 4OYDA 4BBBA 4UF2A 2VOIA 3IHDA 1G5MA 1YSIA 4QNQA 1BXLA 3IHEA 1F16A 4U2VA 4B4SA 1ZY3A 2NL9A 1MAZA 4M0SA 2ME8A 2KUAA 2O42A 1K3KA 3KJ2A 4BPJA 4ZIGA 2O2MA 4OQ6A
chains in the Genus database with same CATH topology
4BPIA 1WSXA 5KTGA 2BIDA 3PK1A 1YSWA 4ZIFA 4BD2A 4U2UA 4WMRA 3KJ0A 4YK9A 5FDOA 4S0OA 1PQ0A 4ZBFA 1YSGA 4ZEQA 5IEZA 3IIHA 1OHUA 5IF4A 1R2EA 2JM6B 5C6HA 4G35A 2A5YA 5FC4A 2ROCA 3IO9A 4ZIHA 3IIGA 1AF3A 1MK3A 3DVUA 4ZIIA 3KJ1A 4BD7A 2VM6A 3I1HA 5FDRA 1R2DA 2W3LA 2V6QA 4MI8A 4HW3A 2VOGA 1DDBA 5C3FA 1LXLA 4BDUA 2VOFA 2MHSA 3ILCA 2VOHA 1GJHA 2O21A 2O2FA 5KU9A 3MQPA 4ZBIA 2JCNA 2IMTA 2IMSA 2M5BA 2MEJA 3IHCA 4ZIEA 2YV6A 2BZWA 4HW4A 1R2GA 2O22A 2K7WA 2KBWA 1G5JA 4OQ5A 4YJ4A 3WIXA 2O2NA 1R2IA 4S0PA 3CVAX 1R2HA 2XPXA 4BD8A 5FMIA 3BL2A 3QBRA 2RODA 1O0LA 3MK8A 2PQKA 2B48A 2LR1A 5JSBA 3D7VA 3KZ0A 4BD6A 2ABOA 4QVXA 2XA0A 3WIYA 1PQ1A 1Q59A 1TY4A 4HW2A 2NLAA 4K5BC 2WH6A 1YSNA 4OYDA 2VOIA 3IHDA 1G5MA 1YSIA 4QNQA 1BXLA 3IHEA 1F16A 4U2VA 4B4SA 1ZY3A 2NL9A 1MAZA 2ME8A 2KUAA 1K3KA 3KJ2A 4BPJA 4ZIGA 2O2MA 4OQ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BPI A;  1WSX A;  5KTG A;  2BID A;  3PK1 A;  1YSW A;  4ZIF A;  4BD2 A;  4U2U A;  4WMR A;  3KJ0 A;  4YK9 A;  5FDO A;  4S0O A;  1PQ0 A;  4ZBF A;  1YSG A;  4ZEQ A;  5IEZ A;  3IIH A;  1OHU A;  5IF4 A;  1R2E A;  2JM6 B;  5C6H A;  4G35 A;  2A5Y A;  5FC4 A;  2ROC A;  3IO9 A;  4ZIH A;  3IIG A;  1AF3 A;  1MK3 A;  3DVU A;  4ZII A;  3KJ1 A;  4BD7 A;  2VM6 A;  3I1H A;  5FDR A;  1R2D A;  2W3L A;  2V6Q A;  4MI8 A;  4HW3 A;  2VOG A;  1DDB A;  5C3F A;  1LXL A;  4BDU A;  2VOF A;  2MHS A;  3ILC A;  2VOH A;  1GJH A;  2O21 A;  2O2F A;  5KU9 A;  3MQP A;  4ZBI A;  2JCN A;  2IMT A;  2IMS A;  2M5B A;  2MEJ A;  3IHC A;  4ZIE A;  2YV6 A;  2BZW A;  4HW4 A;  1R2G A;  2O22 A;  2K7W A;  2KBW A;  1G5J A;  4OQ5 A;  4YJ4 A;  3WIX A;  2O2N A;  1R2I A;  4S0P A;  3CVA X;  1R2H A;  2XPX A;  4BD8 A;  5FMI A;  3BL2 A;  3QBR A;  2ROD A;  1O0L A;  3MK8 A;  2PQK A;  2B48 A;  2LR1 A;  5JSB A;  3D7V A;  3KZ0 A;  4BD6 A;  2ABO A;  4QVX A;  2XA0 A;  3WIY A;  1PQ1 A;  1Q59 A;  1TY4 A;  4HW2 A;  2NLA A;  4K5B C;  2WH6 A;  1YSN A;  4OYD A;  2VOI A;  3IHD A;  1G5M A;  1YSI A;  4QNQ A;  1BXL A;  3IHE A;  1F16 A;  4U2V A;  4B4S A;  1ZY3 A;  2NL9 A;  1MAZ A;  2ME8 A;  2KUA A;  1K3K A;  3KJ2 A;  4BPJ A;  4ZIG A;  2O2M A;  4OQ6 A; 
#chains in the Genus database with same CATH topology
 4BPI A;  1WSX A;  5KTG A;  3JRV A;  2BID A;  3PK1 A;  1YSW A;  4ZIF A;  4BD2 A;  4U2U A;  4WMR A;  3KJ0 A;  4YK9 A;  5FDO A;  4S0O A;  1PQ0 A;  4ZBF A;  1YSG A;  4ZEQ A;  5IEZ A;  3IIH A;  1OHU A;  5IF4 A;  1R2E A;  2JM6 B;  5C6H A;  2K36 A;  2VTY A;  4G35 A;  2A5Y A;  4LQK A;  4UF3 A;  5FC4 A;  2ROC A;  3IO9 A;  4ZIH A;  4BBD A;  3IIG A;  1AF3 A;  1MK3 A;  3DVU A;  4ZII A;  3KJ1 A;  4BD7 A;  2VM6 A;  3I1H A;  5FDR A;  1R2D A;  2W3L A;  2V6Q A;  4MI8 A;  4HW3 A;  2VOG A;  1DDB A;  5C3F A;  1LXL A;  4BDU A;  2VOF A;  2MHS A;  3ILC A;  2VOH A;  1GJH A;  2O21 A;  2O2F A;  2VVY A;  4UF1 A;  5KU9 A;  3MQP A;  4ZBI A;  2JCN A;  2IMT A;  2IMS A;  2M5B A;  2MEJ A;  3IHC A;  4ZIE A;  2YV6 A;  2BZW A;  4HW4 A;  1R2G A;  2O22 A;  2UXE A;  2K7W A;  2KBW A;  1G5J A;  4OQ5 A;  4YJ4 A;  3WIX A;  2O2N A;  2I39 A;  1R2I A;  4S0P A;  4BBC A;  3CVA X;  1R2H A;  2XPX A;  4BD8 A;  5FMI A;  3BL2 A;  3QBR A;  2ROD A;  1O0L A;  3MK8 A;  2PQK A;  2B48 A;  2VVW A;  2LR1 A;  5JSB A;  3D7V A;  2JBY A;  3KZ0 A;  4BD6 A;  2ABO A;  4QVX A;  2XA0 A;  3WIY A;  1PQ1 A;  2VVX A;  1Q59 A;  1TY4 A;  4HW2 A;  2JBX A;  2NLA A;  4K5B C;  4D2M A;  4D2L A;  2WH6 A;  1YSN A;  4OYD A;  4BBB A;  4UF2 A;  2VOI A;  3IHD A;  1G5M A;  1YSI A;  4QNQ A;  1BXL A;  3IHE A;  1F16 A;  4U2V A;  4B4S A;  1ZY3 A;  2NL9 A;  1MAZ A;  4M0S A;  2ME8 A;  2KUA A;  2O42 A;  1K3K A;  3KJ2 A;  4BPJ A;  4ZIG A;  2O2M A;  4OQ6 A; 
#chains in the Genus database with same CATH homology
 4BPI A;  1WSX A;  5KTG A;  2BID A;  3PK1 A;  1YSW A;  4ZIF A;  4BD2 A;  4U2U A;  4WMR A;  3KJ0 A;  4YK9 A;  5FDO A;  4S0O A;  1PQ0 A;  4ZBF A;  1YSG A;  4ZEQ A;  5IEZ A;  3IIH A;  1OHU A;  5IF4 A;  1R2E A;  2JM6 B;  5C6H A;  4G35 A;  2A5Y A;  5FC4 A;  2ROC A;  3IO9 A;  4ZIH A;  3IIG A;  1AF3 A;  1MK3 A;  3DVU A;  4ZII A;  3KJ1 A;  4BD7 A;  2VM6 A;  3I1H A;  5FDR A;  1R2D A;  2W3L A;  2V6Q A;  4MI8 A;  4HW3 A;  2VOG A;  1DDB A;  5C3F A;  1LXL A;  4BDU A;  2VOF A;  2MHS A;  3ILC A;  2VOH A;  1GJH A;  2O21 A;  2O2F A;  5KU9 A;  3MQP A;  4ZBI A;  2JCN A;  2IMT A;  2IMS A;  2M5B A;  2MEJ A;  3IHC A;  4ZIE A;  2YV6 A;  2BZW A;  4HW4 A;  1R2G A;  2O22 A;  2K7W A;  2KBW A;  1G5J A;  4OQ5 A;  4YJ4 A;  3WIX A;  2O2N A;  1R2I A;  4S0P A;  3CVA X;  1R2H A;  2XPX A;  4BD8 A;  5FMI A;  3BL2 A;  3QBR A;  2ROD A;  1O0L A;  3MK8 A;  2PQK A;  2B48 A;  2LR1 A;  5JSB A;  3D7V A;  3KZ0 A;  4BD6 A;  2ABO A;  4QVX A;  2XA0 A;  3WIY A;  1PQ1 A;  1Q59 A;  1TY4 A;  4HW2 A;  2NLA A;  4K5B C;  2WH6 A;  1YSN A;  4OYD A;  2VOI A;  3IHD A;  1G5M A;  1YSI A;  4QNQ A;  1BXL A;  3IHE A;  1F16 A;  4U2V A;  4B4S A;  1ZY3 A;  2NL9 A;  1MAZ A;  2ME8 A;  2KUA A;  1K3K A;  3KJ2 A;  4BPJ A;  4ZIG A;  2O2M A;  4OQ6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...