4ZKLA

Crystal structure of human histidine triad nucleotide-binding protein 1 (hhint1) complexed with jb419 (ap4a analog)
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
112
structure length
112
Chain Sequence
GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords Histidine triad nucleotide-binding protein 1
publication title Crystallographic studies of the complex of human HINT1 protein with a non-hydrolyzable analog of Ap4A.
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 112
sequence length 112
chains with identical sequence B, C, D
ec nomenclature ec 3.-.-.-:
pdb deposition date 2015-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 4zklA00
3O1CA 1EMSA 5IPCA 1Z84A 4NJZA 2FITA 2FHIA 1AV5A 3N1TA 4INIA 3OHEA 4ZKVA 5IPBA 3N1SA 5ED6A 1KPEA 3I4SA 5IN3A 3OMFA 3O1XA 1KPAA 1KPFA 4YKLB 3BL7A 4NDHA 1RZYA 2EO4A 4NDFA 3O1ZA 4ZGLA 1FHIA 1KPCA 3I24A 3NRDA 3SZQA 3BLAA 5CS2A 3OJ7A 3FITA 3QGZA 5IPDA 4INCA 3R6FA 1XMMA 2Q4LA 4EQHA 1HXPA 1ST0A 5ED3A 2H39A 3L7XA 5EMTA 1GUQA 4EQEA 4XBAA 4NJYA 6FITA 3IMIA 1FITA 1Y23A 1HXQA 3SP4A 3WO5A 3RHNA 5I2FA 2Q4HA 4NDIA 1ZWJA 3LB5A 3O0MA 6RHNA 4RHNA 5RHNA 3SPLA 5BV3A 4NK0A 5FITA 5IPEA 1GUPA 4EGUA 3P0TA 5I2EA 1KPBA 4QDVA 4QEBA 4NJXA 3BL9A 4QDEA 3ANOA 3SPDA 2OIKA 3OXKA 4FITA 1ST4A 4ZKLA 4NDGA 4EQGA 1VLRA 3TW2A 3KSVA 1XMLA
chains in the Genus database with same CATH superfamily
3O1CA 1EMSA 5IPCA 1Z84A 4NJZA 2FITA 2R8FA 2FHIA 1AV5A 3N1TA 4INIA 3OHEA 4ZKVA 5IPBA 3N1SA 5ED6A 1KPEA 3I4SA 5IN3A 3OMFA 3O1XA 1KPAA 1KPFA 4YKLB 3BL7A 4NDHA 1RZYA 2EO4A 4NDFA 3O1ZA 4ZGLA 1FHIA 1KPCA 3I24A 3NRDA 3SZQA 2R7JA 3BLAA 5CS2A 3OJ7A 3FITA 3QGZA 5IPDA 4INCA 3R6FA 1XMMA 2Q4LA 2LJWA 4G0AA 4EQHA 1HXPA 1ST0A 5ED3A 2H39A 3L7XA 2R7CA 4I5WA 5EMTA 4G0JA 1GUQA 4EQEA 4XBAA 4NJYA 2GU0A 6FITA 3IMIA 1FITA 1Y23A 1HXQA 2R7PA 3SP4A 3WO5A 3RHNA 5I2FA 2Q4HA 4NDIA 1ZWJA 3LB5A 3O0MA 6RHNA 4RHNA 5RHNA 3SPLA 5BV3A 4NK0A 5FITA 5IPEA 1GUPA 4I5TA 4EGUA 3P0TA 5I2EA 1KPBA 4QDVA 4I5VA 4QEBA 4NJXA 3BL9A 4QDEA 3ANOA 3SPDA 2OIKA 3OXKA 4FITA 1L9VA 1ST4A 4ZKLA 4NDGA 2POFA 1VLRA 4EQGA 3TW2A 3KSVA 1XMLA
chains in the Genus database with same CATH topology
3O1CA 1EMSA 5IPCA 1Z84A 4NJZA 2FITA 2FHIA 1AV5A 3N1TA 4INIA 3OHEA 4ZKVA 5IPBA 3N1SA 5ED6A 1KPEA 3I4SA 5IN3A 3OMFA 3O1XA 1KPAA 1KPFA 4YKLB 3BL7A 4NDHA 1RZYA 2EO4A 4NDFA 3O1ZA 4ZGLA 1FHIA 1KPCA 3I24A 3NRDA 3SZQA 3BLAA 5CS2A 3OJ7A 3FITA 3QGZA 5IPDA 4INCA 3R6FA 1XMMA 2Q4LA 4EQHA 1HXPA 1ST0A 5ED3A 2H39A 3L7XA 5EMTA 1GUQA 4EQEA 4XBAA 4NJYA 6FITA 3IMIA 1FITA 1Y23A 1HXQA 3SP4A 3WO5A 3RHNA 5I2FA 2Q4HA 4NDIA 1ZWJA 3LB5A 3O0MA 6RHNA 4RHNA 5RHNA 3SPLA 5BV3A 4NK0A 5FITA 5IPEA 1GUPA 4EGUA 3P0TA 5I2EA 1KPBA 4QDVA 4QEBA 4NJXA 3BL9A 4QDEA 3ANOA 3SPDA 2OIKA 3OXKA 4FITA 1ST4A 4ZKLA 4NDGA 4EQGA 1VLRA 3TW2A 3KSVA 1XMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O1C A;  1EMS A;  5IPC A;  1Z84 A;  4NJZ A;  2FIT A;  2FHI A;  1AV5 A;  3N1T A;  4INI A;  3OHE A;  4ZKV A;  5IPB A;  3N1S A;  5ED6 A;  1KPE A;  3I4S A;  5IN3 A;  3OMF A;  3O1X A;  1KPA A;  1KPF A;  4YKL B;  3BL7 A;  4NDH A;  1RZY A;  2EO4 A;  4NDF A;  3O1Z A;  4ZGL A;  1FHI A;  1KPC A;  3I24 A;  3NRD A;  3SZQ A;  3BLA A;  5CS2 A;  3OJ7 A;  3FIT A;  3QGZ A;  5IPD A;  4INC A;  3R6F A;  1XMM A;  2Q4L A;  4EQH A;  1HXP A;  1ST0 A;  5ED3 A;  2H39 A;  3L7X A;  5EMT A;  1GUQ A;  4EQE A;  4XBA A;  4NJY A;  6FIT A;  3IMI A;  1FIT A;  1Y23 A;  1HXQ A;  3SP4 A;  3WO5 A;  3RHN A;  5I2F A;  2Q4H A;  4NDI A;  1ZWJ A;  3LB5 A;  3O0M A;  6RHN A;  4RHN A;  5RHN A;  3SPL A;  5BV3 A;  4NK0 A;  5FIT A;  5IPE A;  1GUP A;  4EGU A;  3P0T A;  5I2E A;  1KPB A;  4QDV A;  4QEB A;  4NJX A;  3BL9 A;  4QDE A;  3ANO A;  3SPD A;  2OIK A;  3OXK A;  4FIT A;  1ST4 A;  4ZKL A;  4NDG A;  4EQG A;  1VLR A;  3TW2 A;  3KSV A;  1XML A; 
#chains in the Genus database with same CATH topology
 3O1C A;  1EMS A;  5IPC A;  1Z84 A;  4NJZ A;  2FIT A;  2R8F A;  2FHI A;  1AV5 A;  3N1T A;  4INI A;  3OHE A;  4ZKV A;  5IPB A;  3N1S A;  5ED6 A;  1KPE A;  3I4S A;  5IN3 A;  3OMF A;  3O1X A;  1KPA A;  1KPF A;  4YKL B;  3BL7 A;  4NDH A;  1RZY A;  2EO4 A;  4NDF A;  3O1Z A;  4ZGL A;  1FHI A;  1KPC A;  3I24 A;  3NRD A;  3SZQ A;  2R7J A;  3BLA A;  5CS2 A;  3OJ7 A;  3FIT A;  3QGZ A;  5IPD A;  4INC A;  3R6F A;  1XMM A;  2Q4L A;  2LJW A;  4G0A A;  4EQH A;  1HXP A;  1ST0 A;  5ED3 A;  2H39 A;  3L7X A;  2R7C A;  4I5W A;  5EMT A;  4G0J A;  1GUQ A;  4EQE A;  4XBA A;  4NJY A;  2GU0 A;  6FIT A;  3IMI A;  1FIT A;  1Y23 A;  1HXQ A;  2R7P A;  3SP4 A;  3WO5 A;  3RHN A;  5I2F A;  2Q4H A;  4NDI A;  1ZWJ A;  3LB5 A;  3O0M A;  6RHN A;  4RHN A;  5RHN A;  3SPL A;  5BV3 A;  4NK0 A;  5FIT A;  5IPE A;  1GUP A;  4I5T A;  4EGU A;  3P0T A;  5I2E A;  1KPB A;  4QDV A;  4I5V A;  4QEB A;  4NJX A;  3BL9 A;  4QDE A;  3ANO A;  3SPD A;  2OIK A;  3OXK A;  4FIT A;  1L9V A;  1ST4 A;  4ZKL A;  4NDG A;  2POF A;  1VLR A;  4EQG A;  3TW2 A;  3KSV A;  1XML A; 
#chains in the Genus database with same CATH homology
 3O1C A;  1EMS A;  5IPC A;  1Z84 A;  4NJZ A;  2FIT A;  2FHI A;  1AV5 A;  3N1T A;  4INI A;  3OHE A;  4ZKV A;  5IPB A;  3N1S A;  5ED6 A;  1KPE A;  3I4S A;  5IN3 A;  3OMF A;  3O1X A;  1KPA A;  1KPF A;  4YKL B;  3BL7 A;  4NDH A;  1RZY A;  2EO4 A;  4NDF A;  3O1Z A;  4ZGL A;  1FHI A;  1KPC A;  3I24 A;  3NRD A;  3SZQ A;  3BLA A;  5CS2 A;  3OJ7 A;  3FIT A;  3QGZ A;  5IPD A;  4INC A;  3R6F A;  1XMM A;  2Q4L A;  4EQH A;  1HXP A;  1ST0 A;  5ED3 A;  2H39 A;  3L7X A;  5EMT A;  1GUQ A;  4EQE A;  4XBA A;  4NJY A;  6FIT A;  3IMI A;  1FIT A;  1Y23 A;  1HXQ A;  3SP4 A;  3WO5 A;  3RHN A;  5I2F A;  2Q4H A;  4NDI A;  1ZWJ A;  3LB5 A;  3O0M A;  6RHN A;  4RHN A;  5RHN A;  3SPL A;  5BV3 A;  4NK0 A;  5FIT A;  5IPE A;  1GUP A;  4EGU A;  3P0T A;  5I2E A;  1KPB A;  4QDV A;  4QEB A;  4NJX A;  3BL9 A;  4QDE A;  3ANO A;  3SPD A;  2OIK A;  3OXK A;  4FIT A;  1ST4 A;  4ZKL A;  4NDG A;  4EQG A;  1VLR A;  3TW2 A;  3KSV A;  1XML A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...