4ZKVA

Crystal structure of human histidine triad nucleotide-binding protein 1 (hhint1) refined to 1.92a at p21 space group
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
115
structure length
115
Chain Sequence
RPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Histidine triad nucleotide-binding protein 1
publication title Crystallographic studies of the complex of human HINT1 protein with a non-hydrolyzable analog of Ap4A.
pubmed doi rcsb
source organism Homo sapiens
total genus 28
structure length 115
sequence length 115
chains with identical sequence B, C, D
ec nomenclature ec 3.-.-.-:
pdb deposition date 2015-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01230 HIT HIT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.428.10 Alpha Beta 2-Layer Sandwich HIT family, subunit A HIT-like 4zkvA00
1KPCA 4NDGA 3ANOA 4QDVA 3BL9A 4YKLB 1XMMA 5BV3A 4FITA 4NDFA 6FITA 3OHEA 3QGZA 4XBAA 3NRDA 5ED3A 1FHIA 1GUQA 2Q4LA 3RHNA 3O1XA 1EMSA 5CS2A 4NDIA 4NJXA 1ZWJA 4NK0A 4EQEA 5ED6A 1AV5A 5IPCA 4INCA 3KSVA 1KPFA 1KPBA 1FITA 4QDEA 3I4SA 1HXQA 3O0MA 2Q4HA 3WO5A 3OJ7A 3R6FA 5IN3A 5FITA 3SP4A 3OMFA 4ZKVA 5I2FA 1ST0A 4EQGA 1RZYA 3I24A 2EO4A 5IPDA 4ZKLA 4EGUA 4NDHA 4QEBA 5IPEA 2FHIA 2H39A 2OIKA 1ST4A 3SPLA 2FITA 3N1TA 3O1ZA 3BLAA 4EQHA 1KPEA 1XMLA 1VLRA 5EMTA 3OXKA 4ZGLA 5RHNA 3FITA 4NJYA 1HXPA 5IPBA 1KPAA 3TW2A 1Z84A 4INIA 3IMIA 1GUPA 4RHNA 5I2EA 3P0TA 3SPDA 4NJZA 1Y23A 3O1CA 3N1SA 6RHNA 3BL7A 3L7XA 3LB5A 3SZQA
chains in the Genus database with same CATH superfamily
1KPCA 4NDGA 3ANOA 2LJWA 4QDVA 3BL9A 4YKLB 1XMMA 5BV3A 4FITA 4NDFA 6FITA 3OHEA 3QGZA 4XBAA 3NRDA 5ED3A 1FHIA 1GUQA 2Q4LA 3RHNA 3O1XA 1EMSA 5CS2A 4NDIA 4NJXA 1ZWJA 4NK0A 4EQEA 5ED6A 1AV5A 5IPCA 4INCA 3KSVA 1KPFA 1KPBA 1FITA 4QDEA 1L9VA 3I4SA 1HXQA 3O0MA 2Q4HA 3WO5A 4G0JA 3OJ7A 2POFA 3R6FA 5IN3A 5FITA 3SP4A 3OMFA 4ZKVA 5I2FA 2R8FA 1ST0A 4EQGA 1RZYA 3I24A 2EO4A 5IPDA 4ZKLA 4EGUA 4NDHA 4QEBA 5IPEA 4I5WA 2FHIA 2H39A 4I5TA 2OIKA 1ST4A 3SPLA 2GU0A 2FITA 3N1TA 3O1ZA 3BLAA 4EQHA 1KPEA 1XMLA 1VLRA 5EMTA 4I5VA 3OXKA 4ZGLA 5RHNA 3FITA 2R7JA 4NJYA 1HXPA 5IPBA 1KPAA 3TW2A 1Z84A 4INIA 4G0AA 3IMIA 4RHNA 1GUPA 5I2EA 3P0TA 3SPDA 4NJZA 1Y23A 3O1CA 3N1SA 6RHNA 3BL7A 2R7PA 2R7CA 3L7XA 3LB5A 3SZQA
chains in the Genus database with same CATH topology
1KPCA 4NDGA 3ANOA 4QDVA 3BL9A 4YKLB 1XMMA 5BV3A 4FITA 4NDFA 6FITA 3OHEA 3QGZA 4XBAA 3NRDA 5ED3A 1FHIA 1GUQA 2Q4LA 3RHNA 3O1XA 1EMSA 5CS2A 4NDIA 4NJXA 1ZWJA 4NK0A 4EQEA 5ED6A 1AV5A 5IPCA 4INCA 3KSVA 1KPFA 1KPBA 1FITA 4QDEA 3I4SA 1HXQA 3O0MA 2Q4HA 3WO5A 3OJ7A 3R6FA 5IN3A 5FITA 3SP4A 3OMFA 4ZKVA 5I2FA 1ST0A 4EQGA 1RZYA 3I24A 2EO4A 5IPDA 4ZKLA 4EGUA 4NDHA 4QEBA 5IPEA 2FHIA 2H39A 2OIKA 1ST4A 3SPLA 2FITA 3N1TA 3O1ZA 3BLAA 4EQHA 1KPEA 1XMLA 1VLRA 5EMTA 3OXKA 4ZGLA 5RHNA 3FITA 4NJYA 1HXPA 5IPBA 1KPAA 3TW2A 1Z84A 4INIA 3IMIA 1GUPA 4RHNA 5I2EA 3P0TA 3SPDA 4NJZA 1Y23A 3O1CA 3N1SA 6RHNA 3BL7A 3L7XA 3LB5A 3SZQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KPC A;  4NDG A;  3ANO A;  4QDV A;  3BL9 A;  4YKL B;  1XMM A;  5BV3 A;  4FIT A;  4NDF A;  6FIT A;  3OHE A;  3QGZ A;  4XBA A;  3NRD A;  5ED3 A;  1FHI A;  1GUQ A;  2Q4L A;  3RHN A;  3O1X A;  1EMS A;  5CS2 A;  4NDI A;  4NJX A;  1ZWJ A;  4NK0 A;  4EQE A;  5ED6 A;  1AV5 A;  5IPC A;  4INC A;  3KSV A;  1KPF A;  1KPB A;  1FIT A;  4QDE A;  3I4S A;  1HXQ A;  3O0M A;  2Q4H A;  3WO5 A;  3OJ7 A;  3R6F A;  5IN3 A;  5FIT A;  3SP4 A;  3OMF A;  4ZKV A;  5I2F A;  1ST0 A;  4EQG A;  1RZY A;  3I24 A;  2EO4 A;  5IPD A;  4ZKL A;  4EGU A;  4NDH A;  4QEB A;  5IPE A;  2FHI A;  2H39 A;  2OIK A;  1ST4 A;  3SPL A;  2FIT A;  3N1T A;  3O1Z A;  3BLA A;  4EQH A;  1KPE A;  1XML A;  1VLR A;  5EMT A;  3OXK A;  4ZGL A;  5RHN A;  3FIT A;  4NJY A;  1HXP A;  5IPB A;  1KPA A;  3TW2 A;  1Z84 A;  4INI A;  3IMI A;  1GUP A;  4RHN A;  5I2E A;  3P0T A;  3SPD A;  4NJZ A;  1Y23 A;  3O1C A;  3N1S A;  6RHN A;  3BL7 A;  3L7X A;  3LB5 A;  3SZQ A; 
#chains in the Genus database with same CATH topology
 1KPC A;  4NDG A;  3ANO A;  2LJW A;  4QDV A;  3BL9 A;  4YKL B;  1XMM A;  5BV3 A;  4FIT A;  4NDF A;  6FIT A;  3OHE A;  3QGZ A;  4XBA A;  3NRD A;  5ED3 A;  1FHI A;  1GUQ A;  2Q4L A;  3RHN A;  3O1X A;  1EMS A;  5CS2 A;  4NDI A;  4NJX A;  1ZWJ A;  4NK0 A;  4EQE A;  5ED6 A;  1AV5 A;  5IPC A;  4INC A;  3KSV A;  1KPF A;  1KPB A;  1FIT A;  4QDE A;  1L9V A;  3I4S A;  1HXQ A;  3O0M A;  2Q4H A;  3WO5 A;  4G0J A;  3OJ7 A;  2POF A;  3R6F A;  5IN3 A;  5FIT A;  3SP4 A;  3OMF A;  4ZKV A;  5I2F A;  2R8F A;  1ST0 A;  4EQG A;  1RZY A;  3I24 A;  2EO4 A;  5IPD A;  4ZKL A;  4EGU A;  4NDH A;  4QEB A;  5IPE A;  4I5W A;  2FHI A;  2H39 A;  4I5T A;  2OIK A;  1ST4 A;  3SPL A;  2GU0 A;  2FIT A;  3N1T A;  3O1Z A;  3BLA A;  4EQH A;  1KPE A;  1XML A;  1VLR A;  5EMT A;  4I5V A;  3OXK A;  4ZGL A;  5RHN A;  3FIT A;  2R7J A;  4NJY A;  1HXP A;  5IPB A;  1KPA A;  3TW2 A;  1Z84 A;  4INI A;  4G0A A;  3IMI A;  4RHN A;  1GUP A;  5I2E A;  3P0T A;  3SPD A;  4NJZ A;  1Y23 A;  3O1C A;  3N1S A;  6RHN A;  3BL7 A;  2R7P A;  2R7C A;  3L7X A;  3LB5 A;  3SZQ A; 
#chains in the Genus database with same CATH homology
 1KPC A;  4NDG A;  3ANO A;  4QDV A;  3BL9 A;  4YKL B;  1XMM A;  5BV3 A;  4FIT A;  4NDF A;  6FIT A;  3OHE A;  3QGZ A;  4XBA A;  3NRD A;  5ED3 A;  1FHI A;  1GUQ A;  2Q4L A;  3RHN A;  3O1X A;  1EMS A;  5CS2 A;  4NDI A;  4NJX A;  1ZWJ A;  4NK0 A;  4EQE A;  5ED6 A;  1AV5 A;  5IPC A;  4INC A;  3KSV A;  1KPF A;  1KPB A;  1FIT A;  4QDE A;  3I4S A;  1HXQ A;  3O0M A;  2Q4H A;  3WO5 A;  3OJ7 A;  3R6F A;  5IN3 A;  5FIT A;  3SP4 A;  3OMF A;  4ZKV A;  5I2F A;  1ST0 A;  4EQG A;  1RZY A;  3I24 A;  2EO4 A;  5IPD A;  4ZKL A;  4EGU A;  4NDH A;  4QEB A;  5IPE A;  2FHI A;  2H39 A;  2OIK A;  1ST4 A;  3SPL A;  2FIT A;  3N1T A;  3O1Z A;  3BLA A;  4EQH A;  1KPE A;  1XML A;  1VLR A;  5EMT A;  3OXK A;  4ZGL A;  5RHN A;  3FIT A;  4NJY A;  1HXP A;  5IPB A;  1KPA A;  3TW2 A;  1Z84 A;  4INI A;  3IMI A;  1GUP A;  4RHN A;  5I2E A;  3P0T A;  3SPD A;  4NJZ A;  1Y23 A;  3O1C A;  3N1S A;  6RHN A;  3BL7 A;  3L7X A;  3LB5 A;  3SZQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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