4ZKYA

Structure of f420 binding protein, msmeg_6526, from mycobacterium smegmatis
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
139
structure length
139
Chain Sequence
FDAVTAFADAPAAVLSTLNADGAPHLVPVVFAVHVPHVEGQPARIYTAVDAKRKTTRNLRRLANIDRDSRVSLLVDHYSDDWTQLWWVRADGVATTHHSGDEVATGYALLRAKYHQYERVSLDGPVISVEVSRWASWQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Pyridoxamine 5-phosphate oxidase
publication title Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.
pubmed doi rcsb
source organism Mycobacterium smegmatis
total genus 33
structure length 139
sequence length 139
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2015-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4zkyA00
1EJEA 2D38A 1AXJA 3R5WA 4HMSA 4YBNA 2HTIA 1DNLA 3K86A 1YOAA 2FHQA 3EC6A 4F07A 1TY9A 3DMBA 1VL7A 1RZ1A 3R5ZA 2PTFA 1G79A 4R82A 3ZOGA 2D36A 3CP3A 3ZOCA 2HQ9A 3FGEA 4L82A 3E4VA 2OL5A 3K87A 3FKHA 3DNHA 3HY8A 2D5MA 2FG9A 3F7EA 1USFA 5CHOA 4QVBA 5JABA 4HMUA 2ASFA 3BA3A 4HMXA 3BPKA 3AMFA 1G77A 1Y30A 2IMLA 2ECRA 2R6VA 2QEAA 3NFWA 2X1KA 3U0IA 4HX6A 2NR4A 3R5LA 2VPAA 1NRGA 2GJGA 2HQ7A 2D37A 3B5MA 1WLIA 3VY5A 3H96A 1W9AA 4HMWA 2I51A 2ECUA 3VY2A 2ARZA 4HMTA 3CB0A 3R5YA 1CI0A 4N7RC 3A6QA 3AWHA 4Z85A 1RFEA 1W3QA 4Y9IA 2E83A 1XXOA 1G78A 1XHNA 3SWJA 2A2JA 3DB0A 3KYFA 3K88A 5ESCA 1W3PA 2ED4A 4XJ2A 2AQ6A 1W3RA 1T9MA 3ZOHA 3U5WA 1I0RA 3U35A 3RH7A 3A6RA 3ZOFA 3ZODA 2I02A 1USCA 4IRAA 1WV4A 2HTDA 4YWNA 2QCKA 2RE7A 3R5PA 2OU5A 4XHYA 1I0SA 2IABA 1RZ0A 2RDEA 3BNKA 2R0XA 2FURA 2X1JA 3VYAA 1YLNA 5CHEC 1G76A 3R5RA 1FLMA 2IG6A 4HMVA 3U34A 5BNCA 1WGBA 3IN6A 3GASA 4ZKYA 2Q9KA 3A20A 3ZOEA 3PFTA 1W3OA 1JNWA 3HMZA 2HHZA 3KYGA 1WLKA 3TGVA
chains in the Genus database with same CATH superfamily
1EJEA 2D38A 1AXJA 3R5WA 2P5ZX 4HMSA 2HTIA 4YBNA 1DNLA 3K86A 1YOAA 2FHQA 3EC6A 4F07A 1TY9A 3DMBA 1VL7A 1RZ1A 3R5ZA 2PTFA 1G79A 4R82A 3ZOGA 2D36A 3CP3A 3ZOCA 2HQ9A 3FGEA 4L82A 3E4VA 2OL5A 3K87A 3FKHA 3DNHA 3HY8A 2D5MA 2FG9A 3F7EA 1USFA 5CHOA 4QVBA 5JABA 4HMUA 2ASFA 3BA3A 4HMXA 3BPKA 3AMFA 1G77A 1Y30A 2IMLA 2ECRA 2R6VA 2QEAA 2L1TA 3NFWA 2X1KA 3U0IA 4HX6A 2NR4A 3R5LA 2VPAA 1NRGA 4W64A 2GJGA 2HQ7A 2D37A 3B5MA 1WLIA 3VY5A 3H96A 1W9AA 4HMWA 2I51A 2ECUA 3VY2A 2ARZA 2K4QA 4HMTA 3CB0A 4MTKA 3R5YA 1CI0A 4N7RC 3A6QA 3AWHA 4HKHA 4Z85A 1RFEA 1W3QA 4Y9IA 3V4HA 2E83A 1XXOA 1G78A 1XHNA 3EAAA 3SWJA 2A2JA 3DB0A 3KYFA 3K88A 5ESCA 1W3PA 2ED4A 4XJ2A 2AQ6A 1W3RA 1T9MA 3ZOHA 3U5WA 1I0RA 3U35A 3RH7A 3A6RA 3ZOFA 3ZODA 2I02A 1USCA 4IRAA 1WV4A 2HTDA 4YWNA 2QCKA 2RE7A 2GUJA 3R5PA 2OU5A 4XHYA 1I0SA 2IABA 1RZ0A 2RDEA 3BNKA 2R0XA 2FURA 2X1JA 3VYAA 1YLNA 5CHEC 1G76A 3R5RA 1FLMA 2IG6A 4HMVA 3U34A 5BNCA 1Y12A 1WGBA 3IN6A 3GASA 3HE1A 4ZKYA 2Q9KA 3A20A 4TV4A 3ZOEA 3PFTA 1W3OA 1JNWA 3HMZA 2HHZA 3KYGA 1WLKA 4UHVA 3TGVA
chains in the Genus database with same CATH topology
1EJEA 2D38A 1AXJA 3R5WA 4HMSA 4YBNA 2HTIA 1DNLA 3K86A 1YOAA 2FHQA 3EC6A 4F07A 1TY9A 3DMBA 1VL7A 1RZ1A 3R5ZA 2PTFA 1G79A 4R82A 3ZOGA 2D36A 3CP3A 3ZOCA 2HQ9A 3FGEA 4L82A 3E4VA 2OL5A 3K87A 3FKHA 3DNHA 3HY8A 2D5MA 2FG9A 3F7EA 1USFA 5CHOA 4QVBA 5JABA 4HMUA 2ASFA 3BA3A 4HMXA 3BPKA 3AMFA 1G77A 1Y30A 2IMLA 2ECRA 2R6VA 2QEAA 3NFWA 2X1KA 3U0IA 4HX6A 2NR4A 3R5LA 2VPAA 1NRGA 2GJGA 2HQ7A 2D37A 3B5MA 1WLIA 3VY5A 3H96A 1W9AA 4HMWA 2I51A 2ECUA 3VY2A 2ARZA 4HMTA 3CB0A 3R5YA 1CI0A 4N7RC 3A6QA 3AWHA 4Z85A 1RFEA 1W3QA 4Y9IA 2E83A 1XXOA 1G78A 1XHNA 3SWJA 2A2JA 3DB0A 3KYFA 3K88A 5ESCA 1W3PA 2ED4A 4XJ2A 2AQ6A 1W3RA 1T9MA 3ZOHA 3U5WA 1I0RA 3U35A 3RH7A 3A6RA 3ZOFA 3ZODA 2I02A 1USCA 4IRAA 1WV4A 2HTDA 4YWNA 2QCKA 2RE7A 3R5PA 2OU5A 4XHYA 1I0SA 2IABA 1RZ0A 2RDEA 3BNKA 2R0XA 2FURA 2X1JA 3VYAA 1YLNA 5CHEC 1G76A 3R5RA 1FLMA 2IG6A 4HMVA 3U34A 5BNCA 1WGBA 3IN6A 3GASA 4ZKYA 2Q9KA 3A20A 3ZOEA 3PFTA 1W3OA 1JNWA 3HMZA 2HHZA 3KYGA 1WLKA 3TGVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EJE A;  2D38 A;  1AXJ A;  3R5W A;  4HMS A;  4YBN A;  2HTI A;  1DNL A;  3K86 A;  1YOA A;  2FHQ A;  3EC6 A;  4F07 A;  1TY9 A;  3DMB A;  1VL7 A;  1RZ1 A;  3R5Z A;  2PTF A;  1G79 A;  4R82 A;  3ZOG A;  2D36 A;  3CP3 A;  3ZOC A;  2HQ9 A;  3FGE A;  4L82 A;  3E4V A;  2OL5 A;  3K87 A;  3FKH A;  3DNH A;  3HY8 A;  2D5M A;  2FG9 A;  3F7E A;  1USF A;  5CHO A;  4QVB A;  5JAB A;  4HMU A;  2ASF A;  3BA3 A;  4HMX A;  3BPK A;  3AMF A;  1G77 A;  1Y30 A;  2IML A;  2ECR A;  2R6V A;  2QEA A;  3NFW A;  2X1K A;  3U0I A;  4HX6 A;  2NR4 A;  3R5L A;  2VPA A;  1NRG A;  2GJG A;  2HQ7 A;  2D37 A;  3B5M A;  1WLI A;  3VY5 A;  3H96 A;  1W9A A;  4HMW A;  2I51 A;  2ECU A;  3VY2 A;  2ARZ A;  4HMT A;  3CB0 A;  3R5Y A;  1CI0 A;  4N7R C;  3A6Q A;  3AWH A;  4Z85 A;  1RFE A;  1W3Q A;  4Y9I A;  2E83 A;  1XXO A;  1G78 A;  1XHN A;  3SWJ A;  2A2J A;  3DB0 A;  3KYF A;  3K88 A;  5ESC A;  1W3P A;  2ED4 A;  4XJ2 A;  2AQ6 A;  1W3R A;  1T9M A;  3ZOH A;  3U5W A;  1I0R A;  3U35 A;  3RH7 A;  3A6R A;  3ZOF A;  3ZOD A;  2I02 A;  1USC A;  4IRA A;  1WV4 A;  2HTD A;  4YWN A;  2QCK A;  2RE7 A;  3R5P A;  2OU5 A;  4XHY A;  1I0S A;  2IAB A;  1RZ0 A;  2RDE A;  3BNK A;  2R0X A;  2FUR A;  2X1J A;  3VYA A;  1YLN A;  5CHE C;  1G76 A;  3R5R A;  1FLM A;  2IG6 A;  4HMV A;  3U34 A;  5BNC A;  1WGB A;  3IN6 A;  3GAS A;  4ZKY A;  2Q9K A;  3A20 A;  3ZOE A;  3PFT A;  1W3O A;  1JNW A;  3HMZ A;  2HHZ A;  3KYG A;  1WLK A;  3TGV A; 
#chains in the Genus database with same CATH topology
 1EJE A;  2D38 A;  1AXJ A;  3R5W A;  2P5Z X;  4HMS A;  2HTI A;  4YBN A;  1DNL A;  3K86 A;  1YOA A;  2FHQ A;  3EC6 A;  4F07 A;  1TY9 A;  3DMB A;  1VL7 A;  1RZ1 A;  3R5Z A;  2PTF A;  1G79 A;  4R82 A;  3ZOG A;  2D36 A;  3CP3 A;  3ZOC A;  2HQ9 A;  3FGE A;  4L82 A;  3E4V A;  2OL5 A;  3K87 A;  3FKH A;  3DNH A;  3HY8 A;  2D5M A;  2FG9 A;  3F7E A;  1USF A;  5CHO A;  4QVB A;  5JAB A;  4HMU A;  2ASF A;  3BA3 A;  4HMX A;  3BPK A;  3AMF A;  1G77 A;  1Y30 A;  2IML A;  2ECR A;  2R6V A;  2QEA A;  2L1T A;  3NFW A;  2X1K A;  3U0I A;  4HX6 A;  2NR4 A;  3R5L A;  2VPA A;  1NRG A;  4W64 A;  2GJG A;  2HQ7 A;  2D37 A;  3B5M A;  1WLI A;  3VY5 A;  3H96 A;  1W9A A;  4HMW A;  2I51 A;  2ECU A;  3VY2 A;  2ARZ A;  2K4Q A;  4HMT A;  3CB0 A;  4MTK A;  3R5Y A;  1CI0 A;  4N7R C;  3A6Q A;  3AWH A;  4HKH A;  4Z85 A;  1RFE A;  1W3Q A;  4Y9I A;  3V4H A;  2E83 A;  1XXO A;  1G78 A;  1XHN A;  3EAA A;  3SWJ A;  2A2J A;  3DB0 A;  3KYF A;  3K88 A;  5ESC A;  1W3P A;  2ED4 A;  4XJ2 A;  2AQ6 A;  1W3R A;  1T9M A;  3ZOH A;  3U5W A;  1I0R A;  3U35 A;  3RH7 A;  3A6R A;  3ZOF A;  3ZOD A;  2I02 A;  1USC A;  4IRA A;  1WV4 A;  2HTD A;  4YWN A;  2QCK A;  2RE7 A;  2GUJ A;  3R5P A;  2OU5 A;  4XHY A;  1I0S A;  2IAB A;  1RZ0 A;  2RDE A;  3BNK A;  2R0X A;  2FUR A;  2X1J A;  3VYA A;  1YLN A;  5CHE C;  1G76 A;  3R5R A;  1FLM A;  2IG6 A;  4HMV A;  3U34 A;  5BNC A;  1Y12 A;  1WGB A;  3IN6 A;  3GAS A;  3HE1 A;  4ZKY A;  2Q9K A;  3A20 A;  4TV4 A;  3ZOE A;  3PFT A;  1W3O A;  1JNW A;  3HMZ A;  2HHZ A;  3KYG A;  1WLK A;  4UHV A;  3TGV A; 
#chains in the Genus database with same CATH homology
 1EJE A;  2D38 A;  1AXJ A;  3R5W A;  4HMS A;  4YBN A;  2HTI A;  1DNL A;  3K86 A;  1YOA A;  2FHQ A;  3EC6 A;  4F07 A;  1TY9 A;  3DMB A;  1VL7 A;  1RZ1 A;  3R5Z A;  2PTF A;  1G79 A;  4R82 A;  3ZOG A;  2D36 A;  3CP3 A;  3ZOC A;  2HQ9 A;  3FGE A;  4L82 A;  3E4V A;  2OL5 A;  3K87 A;  3FKH A;  3DNH A;  3HY8 A;  2D5M A;  2FG9 A;  3F7E A;  1USF A;  5CHO A;  4QVB A;  5JAB A;  4HMU A;  2ASF A;  3BA3 A;  4HMX A;  3BPK A;  3AMF A;  1G77 A;  1Y30 A;  2IML A;  2ECR A;  2R6V A;  2QEA A;  3NFW A;  2X1K A;  3U0I A;  4HX6 A;  2NR4 A;  3R5L A;  2VPA A;  1NRG A;  2GJG A;  2HQ7 A;  2D37 A;  3B5M A;  1WLI A;  3VY5 A;  3H96 A;  1W9A A;  4HMW A;  2I51 A;  2ECU A;  3VY2 A;  2ARZ A;  4HMT A;  3CB0 A;  3R5Y A;  1CI0 A;  4N7R C;  3A6Q A;  3AWH A;  4Z85 A;  1RFE A;  1W3Q A;  4Y9I A;  2E83 A;  1XXO A;  1G78 A;  1XHN A;  3SWJ A;  2A2J A;  3DB0 A;  3KYF A;  3K88 A;  5ESC A;  1W3P A;  2ED4 A;  4XJ2 A;  2AQ6 A;  1W3R A;  1T9M A;  3ZOH A;  3U5W A;  1I0R A;  3U35 A;  3RH7 A;  3A6R A;  3ZOF A;  3ZOD A;  2I02 A;  1USC A;  4IRA A;  1WV4 A;  2HTD A;  4YWN A;  2QCK A;  2RE7 A;  3R5P A;  2OU5 A;  4XHY A;  1I0S A;  2IAB A;  1RZ0 A;  2RDE A;  3BNK A;  2R0X A;  2FUR A;  2X1J A;  3VYA A;  1YLN A;  5CHE C;  1G76 A;  3R5R A;  1FLM A;  2IG6 A;  4HMV A;  3U34 A;  5BNC A;  1WGB A;  3IN6 A;  3GAS A;  4ZKY A;  2Q9K A;  3A20 A;  3ZOE A;  3PFT A;  1W3O A;  1JNW A;  3HMZ A;  2HHZ A;  3KYG A;  1WLK A;  3TGV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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