4ZQUA

Cdia-ct/cdii toxin and immunity complex from yersinia pseudotuberculosis
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
124
structure length
124
Chain Sequence
MPWEDYVGKTLPVGSRLPPNFKTYDYFDRATGAVVSAKSLDTQTMAKLSNPNQVYSSIKKNIDVTAKFEKASLSGVTVNSSMITSKEVRLAVPVNTTKAQWTEINRAIEYGKNQGVKVTVTQVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Toxin
molecule keywords CdiA-CT toxin, Conserved domain protein
publication title Diversification of beta-Augmentation Interactions between CDI Toxin/Immunity Proteins.
pubmed doi rcsb
source organism Yersinia pseudotuberculosis serotype o:3 (strain ypiii)
total genus 39
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2015-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.110 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 4zquA00
4G6UA 4ZQUA
chains in the Genus database with same CATH superfamily
2INBA 1T0FA 3BT7A 1OB8A 2FL3A 1XMXA 1RLVA 2OKFA 3IEYB 2W8MA 1RZNA 2FKCA 1A79A 2JJQA 2WCZA 4TKDA 2FKHB 4G6VA 4QBLA 1OB9A 2CV8A 2GJWA 2OSTA 1Y1OA 2ZYZB 3AJVB 1ZP7A 3IEYA 4DAVA 1Y88A 4E6ZA 2WJ0A 5FDKA 2WCWA 4LQEA 4DAPA 3P1ZB 2ZYZA 3AJVA 2VLDA 4QBNA 4QBOA 4ZQUA 2VS1A 2WIWA 2BH2A 2CZRA 2FCOA 1HH1A 2FLCA 3FOVA 1R0VA 2Z0RA 4G6UA 1R11A 1UWVA 3P1ZA 2GW6A 4DA2A 4EV1A 4TKKA 3P1YA 1IPIA 2EO0A 2IXSA 3IF0X 2DBSA 2WIZA 1GEFA 1F1ZA 1YNMA 3DNXA
chains in the Genus database with same CATH topology
2INBA 1T0FA 3BT7A 1OB8A 2FL3A 1XMXA 1RLVA 2OKFA 3IEYB 2W8MA 1RZNA 2FKCA 1A79A 2JJQA 2WCZA 4TKDA 2FKHB 4G6VA 4QBLA 1OB9A 2CV8A 2GJWA 2OSTA 1Y1OA 2ZYZB 3AJVB 1ZP7A 3IEYA 4DAVA 1Y88A 4E6ZA 2WJ0A 5FDKA 2WCWA 4LQEA 4DAPA 3P1ZB 2ZYZA 3AJVA 2VLDA 4QBNA 4QBOA 4ZQUA 2VS1A 2WIWA 2BH2A 2CZRA 2FCOA 1HH1A 2FLCA 3FOVA 1R0VA 2Z0RA 4G6UA 1R11A 1UWVA 3P1ZA 2GW6A 4DA2A 4EV1A 4TKKA 3P1YA 1IPIA 2EO0A 2IXSA 3IF0X 2DBSA 2WIZA 1GEFA 1F1ZA 1YNMA 3DNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G6U A;  4ZQU A; 
#chains in the Genus database with same CATH topology
 2INB A;  1T0F A;  3BT7 A;  1OB8 A;  2FL3 A;  1XMX A;  1RLV A;  2OKF A;  3IEY B;  2W8M A;  1RZN A;  2FKC A;  1A79 A;  2JJQ A;  2WCZ A;  4TKD A;  2FKH B;  4G6V A;  4QBL A;  1OB9 A;  2CV8 A;  2GJW A;  2OST A;  1Y1O A;  2ZYZ B;  3AJV B;  1ZP7 A;  3IEY A;  4DAV A;  1Y88 A;  4E6Z A;  2WJ0 A;  5FDK A;  2WCW A;  4LQE A;  4DAP A;  3P1Z B;  2ZYZ A;  3AJV A;  2VLD A;  4QBN A;  4QBO A;  4ZQU A;  2VS1 A;  2WIW A;  2BH2 A;  2CZR A;  2FCO A;  1HH1 A;  2FLC A;  3FOV A;  1R0V A;  2Z0R A;  4G6U A;  1R11 A;  1UWV A;  3P1Z A;  2GW6 A;  4DA2 A;  4EV1 A;  4TKK A;  3P1Y A;  1IPI A;  2EO0 A;  2IXS A;  3IF0 X;  2DBS A;  2WIZ A;  1GEF A;  1F1Z A;  1YNM A;  3DNX A; 
#chains in the Genus database with same CATH homology
 2INB A;  1T0F A;  3BT7 A;  1OB8 A;  2FL3 A;  1XMX A;  1RLV A;  2OKF A;  3IEY B;  2W8M A;  1RZN A;  2FKC A;  1A79 A;  2JJQ A;  2WCZ A;  4TKD A;  2FKH B;  4G6V A;  4QBL A;  1OB9 A;  2CV8 A;  2GJW A;  2OST A;  1Y1O A;  2ZYZ B;  3AJV B;  1ZP7 A;  3IEY A;  4DAV A;  1Y88 A;  4E6Z A;  2WJ0 A;  5FDK A;  2WCW A;  4LQE A;  4DAP A;  3P1Z B;  2ZYZ A;  3AJV A;  2VLD A;  4QBN A;  4QBO A;  4ZQU A;  2VS1 A;  2WIW A;  2BH2 A;  2CZR A;  2FCO A;  1HH1 A;  2FLC A;  3FOV A;  1R0V A;  2Z0R A;  4G6U A;  1R11 A;  1UWV A;  3P1Z A;  2GW6 A;  4DA2 A;  4EV1 A;  4TKK A;  3P1Y A;  1IPI A;  2EO0 A;  2IXS A;  3IF0 X;  2DBS A;  2WIZ A;  1GEF A;  1F1Z A;  1YNM A;  3DNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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