4ZUMA

Crystal structure of acetylpolyamine amidohydrolase from mycoplana ramosa in complex with a trifluoromethylketone inhibitor
Total Genus 117
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
341
structure length
341
Chain Sequence
MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFDDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Acetylpolyamine aminohydrolase
publication title Design, Synthesis, and Evaluation of Polyamine Deacetylase Inhibitors, and High-Resolution Crystal Structures of Their Complexes with Acetylpolyamine Amidohydrolase.
pubmed doi rcsb
source organism Mycoplana ramosa
total genus 117
structure length 341
sequence length 341
chains with identical sequence B
ec nomenclature ec 3.5.1.48: Acetylspermidine deacetylase.
pdb deposition date 2015-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 4zumA00
1T67A 3EZTA 4BKXB 2V5WA 5THSA 2VQJA 4ZURA 5G0XA 4QA0A 5D1CA 4BZ5A 3MZ3A 4QA3A 5EENA 3Q9FA 2VQVA 3MZ4A 5FUEA 5D1DA 5EEKA 3C10A 5EFNA 4QA2A 3MZ7A 5G11A 5EEIA 5EEMA 4RN0A 1C3SA 3SFFA 5D1BA 5G0IA 5EFBD 5IWGA 5G10A 3ZNRA 2VQMA 5G0HA 3EZPA 5DC5A 5EFJD 1VKGA 5A2SA 5G3WA 3SFHA 3MAXA 4CBYA 4BZ9A 1ZZ1A 1T64A 5G1CA 4ZUOA 5G1BA 3ZNSA 5THTA 4QA6A 3MENA 1T69A 4QA1A 5G12A 5LI3A 4ZUMA 5IX0A 4CQFA 5JI5A 5THVA 4ZUPA 5EFHA 4BZ6A 5THUA 4A69A 3MZ6A 5G17A 5BWZA 5ICNB 4BZ8A 5G0JA 5EEFA 4LXZA 3RQDA 1C3PA 3F0RA 3Q9BA 3F06A 5EFGA 4RN2A 1ZZ3A 2VQQA 4QA7A 2V5XA 3C0YA 5EF8A 1W22A 5EFKB 1C3RA 5G0GA 4ZUNA 4QA4A 2VQWG 3EWFA 2VCGA 4LY1A 5DC8A 4QA5A 4RN1A 5G0YA 3Q9EA 5EF7A 5G13A 1ZZ0A 2VQOA 3EW8A 3F07A 3C0ZA 5DC7A 2GH6A 5FCWA 4BZ7A 4CBTA 5DC6A 4ZUQA 5G1AA 3Q9CA
chains in the Genus database with same CATH superfamily
1TA1A 2AEBA 1P8OA 1P8MA 1T67A 3EZTA 1HQFA 4HXQA 4BKXB 4IE3A 2V5WA 3GMZA 4ITYA 3GN0A 5THSA 2VQJA 4ZURA 4IXVA 5G0XA 3THHA 3SL0A 4QA0A 3E6VA 4I06A 5D1CA 4BZ5A 4IXUA 5ICNB 3DJ8A 4MXRA 3MZ3A 4QA3A 1WOHA 5EENA 3Q9FA 4MYKA 2VQVA 3MZ4A 5FUEA 4RHJA 4HZEA 5D1DA 1P8NA 5EEKA 1TBHA 3C10A 4CEVA 1HQHA 1T4PA 4QA2A 3MZ7A 1HQGA 5EFNA 5G11A 3E9BA 1R1OA 4IU1A 4MYFA 5EEIA 4RN0A 1C3SA 3E6KA 5EEMA 4Q3RC 2EF5A 4GWDA 3SFFA 5D1BA 2A0MA 3TF3A 4RHQA 5G0IA 5EFBD 4Q41A 4Q3SA 2EIVA 5IWGA 3SKKA 5G10A 1PQ3A 1D3VA 4Q3UA 3ZNRA 2VQMA 2EF4A 5G0HA 3EZPA 5DC5A 5EFJD 1VKGA 1ZPEA 1WVAA 4HWWA 5A2SA 1P8SA 5G3WA 1HQXA 4FCKA 3LHLA 3LP4A 3SFHA 1TBLA 4Q40A 1P8RA 3MAXA 4CBYA 4GSMA 5RLAA 2PHAA 4BZ9A 4MYNA 1ZZ1A 4IU5A 1WVBA 4GSVA 3THJA 4IE2A 1T64A 5G1CA 4ZUOA 5G1BA 1TBJA 1ZPGA 1T4TA 4GWCA 4Q3PA 5THTA 4QA6A 3NIPA 3SJTA 3ZNSA 3MENA 4FCIA 1WOGA 1GQ6A 1T69A 3LP7A 4QA1A 4RHKA 5G12A 5HJ9A 4IE1A 4ZUMA 3PZLA 3F80A 3NIQA 5IX0A 4CQFA 5LI3A 5JI5A 4Q42A 4RHIA 3TH7A 5THVA 3RLAA 3M1RA 3MFWA 4ZUPA 5EFHA 4RHMA 4BZ6A 5THUA 3CEVA 1T5GA 4A69A 1XFKA 3MJLA 3MZ6A 5G17A 5BWZA 1HQ5A 4BZ8A 3NIOA 4RLAA 5EEFA 4LXZA 5G0JA 4DZ4A 2PLLA 2ZAVA 1C3PA 3RQDA 3F0RA 3Q9BA 1RLAA 3F06A 5EFGA 4RN2A 4G3HA 1T4SA 4Q3TA 4Q3VA 1ZZ3A 2VQQA 4QA7A 2RLAA 2V5XA 4Q3RA 1T5FA 3C0YA 4Q3QA 5EF8A 1W22A 5EFKB 1C3RA 3THEA 5G0GA 1WOIA 1P8QA 4ZUNA 4IU0A 3SL1A 4QA4A 2VQWG 3EWFA 2VCGA 1GQ7A 3E8QA 4GSZA 1T4RA 1P8PA 4LY1A 2PHOA 5DC8A 3MMRA 3E8ZA 5CEVA 4QA5A 5HJAA 4RN1A 5G0YA 4RHLA 2CEVA 3Q9EA 4MYLA 5EF7A 5G13A 1ZZ0A 1CEVA 2VQOA 3EW8A 3F07A 3C0ZA 5DC7A 3KV2A 2GH6A 5FCWA 4BZ7A 3MFVA 4CBTA 5DC6A 4IU4A 4ZUQA 5G1AA 3Q9CA
chains in the Genus database with same CATH topology
1T67A 3EZTA 4BKXB 2V5WA 5THSA 2VQJA 4ZURA 5G0XA 4QA0A 5D1CA 4BZ5A 3MZ3A 4QA3A 5EENA 3Q9FA 2VQVA 3MZ4A 5FUEA 5D1DA 5EEKA 3C10A 5EFNA 4QA2A 3MZ7A 5G11A 5EEIA 5EEMA 4RN0A 1C3SA 3SFFA 5D1BA 5G0IA 5EFBD 5IWGA 5G10A 3ZNRA 2VQMA 5G0HA 3EZPA 5DC5A 5EFJD 1VKGA 5A2SA 5G3WA 3SFHA 3MAXA 4CBYA 4BZ9A 1ZZ1A 1T64A 5G1CA 4ZUOA 5G1BA 3ZNSA 5THTA 4QA6A 3MENA 1T69A 4QA1A 5G12A 5LI3A 4ZUMA 5IX0A 4CQFA 5JI5A 5THVA 4ZUPA 5EFHA 4BZ6A 5THUA 4A69A 3MZ6A 5G17A 5BWZA 5ICNB 4BZ8A 5G0JA 5EEFA 4LXZA 3RQDA 1C3PA 3F0RA 3Q9BA 3F06A 5EFGA 4RN2A 1ZZ3A 2VQQA 4QA7A 2V5XA 3C0YA 5EF8A 1W22A 5EFKB 1C3RA 5G0GA 4ZUNA 4QA4A 2VQWG 3EWFA 2VCGA 4LY1A 5DC8A 4QA5A 4RN1A 5G0YA 3Q9EA 5EF7A 5G13A 1ZZ0A 2VQOA 3EW8A 3F07A 3C0ZA 5DC7A 2GH6A 5FCWA 4BZ7A 4CBTA 5DC6A 4ZUQA 5G1AA 3Q9CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T67 A;  3EZT A;  4BKX B;  2V5W A;  5THS A;  2VQJ A;  4ZUR A;  5G0X A;  4QA0 A;  5D1C A;  4BZ5 A;  3MZ3 A;  4QA3 A;  5EEN A;  3Q9F A;  2VQV A;  3MZ4 A;  5FUE A;  5D1D A;  5EEK A;  3C10 A;  5EFN A;  4QA2 A;  3MZ7 A;  5G11 A;  5EEI A;  5EEM A;  4RN0 A;  1C3S A;  3SFF A;  5D1B A;  5G0I A;  5EFB D;  5IWG A;  5G10 A;  3ZNR A;  2VQM A;  5G0H A;  3EZP A;  5DC5 A;  5EFJ D;  1VKG A;  5A2S A;  5G3W A;  3SFH A;  3MAX A;  4CBY A;  4BZ9 A;  1ZZ1 A;  1T64 A;  5G1C A;  4ZUO A;  5G1B A;  3ZNS A;  5THT A;  4QA6 A;  3MEN A;  1T69 A;  4QA1 A;  5G12 A;  5LI3 A;  4ZUM A;  5IX0 A;  4CQF A;  5JI5 A;  5THV A;  4ZUP A;  5EFH A;  4BZ6 A;  5THU A;  4A69 A;  3MZ6 A;  5G17 A;  5BWZ A;  5ICN B;  4BZ8 A;  5G0J A;  5EEF A;  4LXZ A;  3RQD A;  1C3P A;  3F0R A;  3Q9B A;  3F06 A;  5EFG A;  4RN2 A;  1ZZ3 A;  2VQQ A;  4QA7 A;  2V5X A;  3C0Y A;  5EF8 A;  1W22 A;  5EFK B;  1C3R A;  5G0G A;  4ZUN A;  4QA4 A;  2VQW G;  3EWF A;  2VCG A;  4LY1 A;  5DC8 A;  4QA5 A;  4RN1 A;  5G0Y A;  3Q9E A;  5EF7 A;  5G13 A;  1ZZ0 A;  2VQO A;  3EW8 A;  3F07 A;  3C0Z A;  5DC7 A;  2GH6 A;  5FCW A;  4BZ7 A;  4CBT A;  5DC6 A;  4ZUQ A;  5G1A A;  3Q9C A; 
#chains in the Genus database with same CATH topology
 1TA1 A;  2AEB A;  1P8O A;  1P8M A;  1T67 A;  3EZT A;  1HQF A;  4HXQ A;  4BKX B;  4IE3 A;  2V5W A;  3GMZ A;  4ITY A;  3GN0 A;  5THS A;  2VQJ A;  4ZUR A;  4IXV A;  5G0X A;  3THH A;  3SL0 A;  4QA0 A;  3E6V A;  4I06 A;  5D1C A;  4BZ5 A;  4IXU A;  5ICN B;  3DJ8 A;  4MXR A;  3MZ3 A;  4QA3 A;  1WOH A;  5EEN A;  3Q9F A;  4MYK A;  2VQV A;  3MZ4 A;  5FUE A;  4RHJ A;  4HZE A;  5D1D A;  1P8N A;  5EEK A;  1TBH A;  3C10 A;  4CEV A;  1HQH A;  1T4P A;  4QA2 A;  3MZ7 A;  1HQG A;  5EFN A;  5G11 A;  3E9B A;  1R1O A;  4IU1 A;  4MYF A;  5EEI A;  4RN0 A;  1C3S A;  3E6K A;  5EEM A;  4Q3R C;  2EF5 A;  4GWD A;  3SFF A;  5D1B A;  2A0M A;  3TF3 A;  4RHQ A;  5G0I A;  5EFB D;  4Q41 A;  4Q3S A;  2EIV A;  5IWG A;  3SKK A;  5G10 A;  1PQ3 A;  1D3V A;  4Q3U A;  3ZNR A;  2VQM A;  2EF4 A;  5G0H A;  3EZP A;  5DC5 A;  5EFJ D;  1VKG A;  1ZPE A;  1WVA A;  4HWW A;  5A2S A;  1P8S A;  5G3W A;  1HQX A;  4FCK A;  3LHL A;  3LP4 A;  3SFH A;  1TBL A;  4Q40 A;  1P8R A;  3MAX A;  4CBY A;  4GSM A;  5RLA A;  2PHA A;  4BZ9 A;  4MYN A;  1ZZ1 A;  4IU5 A;  1WVB A;  4GSV A;  3THJ A;  4IE2 A;  1T64 A;  5G1C A;  4ZUO A;  5G1B A;  1TBJ A;  1ZPG A;  1T4T A;  4GWC A;  4Q3P A;  5THT A;  4QA6 A;  3NIP A;  3SJT A;  3ZNS A;  3MEN A;  4FCI A;  1WOG A;  1GQ6 A;  1T69 A;  3LP7 A;  4QA1 A;  4RHK A;  5G12 A;  5HJ9 A;  4IE1 A;  4ZUM A;  3PZL A;  3F80 A;  3NIQ A;  5IX0 A;  4CQF A;  5LI3 A;  5JI5 A;  4Q42 A;  4RHI A;  3TH7 A;  5THV A;  3RLA A;  3M1R A;  3MFW A;  4ZUP A;  5EFH A;  4RHM A;  4BZ6 A;  5THU A;  3CEV A;  1T5G A;  4A69 A;  1XFK A;  3MJL A;  3MZ6 A;  5G17 A;  5BWZ A;  1HQ5 A;  4BZ8 A;  3NIO A;  4RLA A;  5EEF A;  4LXZ A;  5G0J A;  4DZ4 A;  2PLL A;  2ZAV A;  1C3P A;  3RQD A;  3F0R A;  3Q9B A;  1RLA A;  3F06 A;  5EFG A;  4RN2 A;  4G3H A;  1T4S A;  4Q3T A;  4Q3V A;  1ZZ3 A;  2VQQ A;  4QA7 A;  2RLA A;  2V5X A;  4Q3R A;  1T5F A;  3C0Y A;  4Q3Q A;  5EF8 A;  1W22 A;  5EFK B;  1C3R A;  3THE A;  5G0G A;  1WOI A;  1P8Q A;  4ZUN A;  4IU0 A;  3SL1 A;  4QA4 A;  2VQW G;  3EWF A;  2VCG A;  1GQ7 A;  3E8Q A;  4GSZ A;  1T4R A;  1P8P A;  4LY1 A;  2PHO A;  5DC8 A;  3MMR A;  3E8Z A;  5CEV A;  4QA5 A;  5HJA A;  4RN1 A;  5G0Y A;  4RHL A;  2CEV A;  3Q9E A;  4MYL A;  5EF7 A;  5G13 A;  1ZZ0 A;  1CEV A;  2VQO A;  3EW8 A;  3F07 A;  3C0Z A;  5DC7 A;  3KV2 A;  2GH6 A;  5FCW A;  4BZ7 A;  3MFV A;  4CBT A;  5DC6 A;  4IU4 A;  4ZUQ A;  5G1A A;  3Q9C A; 
#chains in the Genus database with same CATH homology
 1T67 A;  3EZT A;  4BKX B;  2V5W A;  5THS A;  2VQJ A;  4ZUR A;  5G0X A;  4QA0 A;  5D1C A;  4BZ5 A;  3MZ3 A;  4QA3 A;  5EEN A;  3Q9F A;  2VQV A;  3MZ4 A;  5FUE A;  5D1D A;  5EEK A;  3C10 A;  5EFN A;  4QA2 A;  3MZ7 A;  5G11 A;  5EEI A;  5EEM A;  4RN0 A;  1C3S A;  3SFF A;  5D1B A;  5G0I A;  5EFB D;  5IWG A;  5G10 A;  3ZNR A;  2VQM A;  5G0H A;  3EZP A;  5DC5 A;  5EFJ D;  1VKG A;  5A2S A;  5G3W A;  3SFH A;  3MAX A;  4CBY A;  4BZ9 A;  1ZZ1 A;  1T64 A;  5G1C A;  4ZUO A;  5G1B A;  3ZNS A;  5THT A;  4QA6 A;  3MEN A;  1T69 A;  4QA1 A;  5G12 A;  5LI3 A;  4ZUM A;  5IX0 A;  4CQF A;  5JI5 A;  5THV A;  4ZUP A;  5EFH A;  4BZ6 A;  5THU A;  4A69 A;  3MZ6 A;  5G17 A;  5BWZ A;  5ICN B;  4BZ8 A;  5G0J A;  5EEF A;  4LXZ A;  3RQD A;  1C3P A;  3F0R A;  3Q9B A;  3F06 A;  5EFG A;  4RN2 A;  1ZZ3 A;  2VQQ A;  4QA7 A;  2V5X A;  3C0Y A;  5EF8 A;  1W22 A;  5EFK B;  1C3R A;  5G0G A;  4ZUN A;  4QA4 A;  2VQW G;  3EWF A;  2VCG A;  4LY1 A;  5DC8 A;  4QA5 A;  4RN1 A;  5G0Y A;  3Q9E A;  5EF7 A;  5G13 A;  1ZZ0 A;  2VQO A;  3EW8 A;  3F07 A;  3C0Z A;  5DC7 A;  2GH6 A;  5FCW A;  4BZ7 A;  4CBT A;  5DC6 A;  4ZUQ A;  5G1A A;  3Q9C A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...