4ZUPA

Crystal structure of acetylpolyamine amidohydrolase from mycoplana ramosa in complex with a hydroxamate inhibitor
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
341
structure length
341
Chain Sequence
MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFDDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Acetylpolyamine aminohydrolase
publication title Design, Synthesis, and Evaluation of Polyamine Deacetylase Inhibitors, and High-Resolution Crystal Structures of Their Complexes with Acetylpolyamine Amidohydrolase.
pubmed doi rcsb
source organism Mycoplana ramosa
total genus 116
structure length 341
sequence length 341
chains with identical sequence B
ec nomenclature ec 3.5.1.48: Acetylspermidine deacetylase.
pdb deposition date 2015-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 4zupA00
4QA0A 5G17A 5DC5A 5G1CA 3EW8A 5EEMA 4ZUMA 5EFNA 3Q9EA 4BKXB 5EF8A 5EEKA 2VQMA 1VKGA 4ZUOA 4RN1A 1T67A 2VQOA 5EFJD 2VQWG 4ZUNA 3SFHA 5G3WA 5JI5A 5G11A 3C10A 3RQDA 5EENA 1W22A 5G0YA 4QA6A 1ZZ0A 3MZ6A 4LXZA 5G0JA 5G0IA 3C0YA 4RN2A 1C3SA 2V5XA 5EEFA 3ZNRA 4RN0A 3MENA 1T64A 4BZ5A 5EFHA 5DC6A 3F07A 5EFGA 4QA4A 4BZ8A 3Q9BA 5G0HA 4CBYA 5EF7A 5D1CA 3SFFA 4A69A 3ZNSA 4QA3A 3Q9FA 1T69A 5THTA 5IX0A 5D1BA 5THVA 2VQVA 2VCGA 5EFKB 5FCWA 4BZ7A 3EWFA 4CBTA 3MAXA 4ZURA 5G12A 2VQQA 5G10A 5BWZA 5G0GA 5G1AA 3MZ3A 4QA1A 5THSA 3Q9CA 5IWGA 3C0ZA 3F06A 5THUA 4BZ6A 4QA7A 5LI3A 1C3RA 2GH6A 4ZUQA 3MZ4A 1C3PA 5A2SA 3MZ7A 5G13A 5DC7A 4BZ9A 3F0RA 5FUEA 1ZZ1A 5G0XA 3EZPA 5EFBD 5ICNB 2VQJA 5D1DA 4QA2A 5G1BA 3EZTA 4LY1A 4QA5A 4CQFA 2V5WA 5EEIA 5DC8A 4ZUPA 1ZZ3A
chains in the Genus database with same CATH superfamily
4QA0A 5G17A 5DC5A 4IXVA 5G1CA 3EW8A 1HQGA 5EEMA 2CEVA 4FCIA 4ZUMA 5EFNA 3LP7A 3E9BA 2PHOA 1WVAA 3CEVA 3Q9EA 4BKXB 5EF8A 1P8RA 2VQMA 5EEKA 1VKGA 2PHAA 2RLAA 3F80A 3LHLA 4HWWA 4I06A 4IU5A 1T67A 4IU4A 4RN1A 1T4RA 2VQOA 4G3HA 3NIOA 4IE3A 1D3VA 4Q3RC 5EFJD 4ZUOA 2VQWG 4ZUNA 3SFHA 5G3WA 4Q3RA 4HZEA 1GQ7A 4IXUA 5JI5A 5CEVA 5G11A 3C10A 3RQDA 5EENA 1P8OA 1HQ5A 1W22A 3M1RA 4ITYA 5G0YA 4GSZA 2AEBA 1ZZ0A 4QA6A 3MZ6A 1TBJA 3RLAA 1T4PA 4LXZA 5G0JA 5G0IA 4GWDA 3C0YA 4RN2A 1PQ3A 1T5FA 4HXQA 1C3SA 4CEVA 2V5XA 1P8MA 5EEFA 3ZNRA 4RHIA 4RN0A 1T4TA 3MENA 3E8QA 1T64A 4Q3PA 1R1OA 3THEA 4Q42A 1ZPGA 4BZ5A 5EFHA 3GN0A 5DC6A 4MYFA 3F07A 3MMRA 4QA4A 5EFGA 1T5GA 4BZ8A 5HJAA 3PZLA 4MYNA 3Q9BA 5G0HA 4CBYA 5EF7A 5D1CA 3SFFA 3TF3A 5EEIA 2EF5A 4RHQA 3SL0A 4A69A 3ZNSA 4GWCA 4QA3A 4RLAA 1P8QA 3E8ZA 3GMZA 3Q9FA 4MXRA 3TH7A 4Q3VA 1T69A 1TBHA 2EIVA 5THTA 2EF4A 5IX0A 3KV2A 5D1BA 3MFVA 4Q40A 4GSMA 2VQVA 2ZAVA 5THVA 1HQXA 2VCGA 4IE2A 5EFKB 5FCWA 3SL1A 4BZ7A 2A0MA 3EWFA 4Q3TA 4CBTA 3MAXA 4ZURA 5G12A 2VQQA 5G10A 4Q3SA 5BWZA 5HJ9A 5G0GA 4IU1A 1WVBA 5G1AA 3MZ3A 1P8PA 4QA1A 5THSA 3Q9CA 5IWGA 5RLAA 1HQFA 1T4SA 4DZ4A 3C0ZA 1ZPEA 3F06A 5THUA 4BZ6A 4QA7A 2PLLA 5LI3A 1C3RA 2GH6A 1RLAA 3MJLA 3MZ4A 4RHJA 4ZUQA 1C3PA 4MYLA 1WOGA 5A2SA 4RHKA 4RHLA 3E6VA 4Q41A 3MZ7A 4FCKA 5G13A 1GQ6A 5DC7A 4BZ9A 1WOHA 3SKKA 1P8SA 3THHA 3F0RA 4IU0A 5FUEA 1ZZ1A 5G0XA 1HQHA 3SJTA 4MYKA 4ZUPA 3MFWA 3NIPA 3EZPA 1WOIA 3LP4A 4RHMA 1TA1A 5EFBD 5ICNB 2VQJA 4IE1A 3THJA 1P8NA 1XFKA 4GSVA 4QA2A 5D1DA 5G1BA 3EZTA 4LY1A 4Q3UA 4QA5A 4CQFA 2V5WA 3DJ8A 4Q3QA 5DC8A 1CEVA 1TBLA 3E6KA 3NIQA 1ZZ3A
chains in the Genus database with same CATH topology
4QA0A 5G17A 5DC5A 5G1CA 3EW8A 5EEMA 4ZUMA 5EFNA 3Q9EA 4BKXB 5EF8A 5EEKA 2VQMA 1VKGA 4ZUOA 4RN1A 1T67A 2VQOA 5EFJD 2VQWG 4ZUNA 3SFHA 5G3WA 5JI5A 5G11A 3C10A 3RQDA 5EENA 1W22A 5G0YA 4QA6A 1ZZ0A 3MZ6A 4LXZA 5G0JA 5G0IA 3C0YA 4RN2A 1C3SA 2V5XA 5EEFA 3ZNRA 4RN0A 3MENA 1T64A 4BZ5A 5EFHA 5DC6A 3F07A 5EFGA 4QA4A 4BZ8A 3Q9BA 5G0HA 4CBYA 5EF7A 5D1CA 3SFFA 4A69A 3ZNSA 4QA3A 3Q9FA 1T69A 5THTA 5IX0A 5D1BA 5THVA 2VQVA 2VCGA 5EFKB 5FCWA 4BZ7A 3EWFA 4CBTA 3MAXA 4ZURA 5G12A 2VQQA 5G10A 5BWZA 5G0GA 5G1AA 3MZ3A 4QA1A 5THSA 3Q9CA 5IWGA 3C0ZA 3F06A 5THUA 4BZ6A 4QA7A 5LI3A 1C3RA 2GH6A 4ZUQA 3MZ4A 1C3PA 5A2SA 3MZ7A 5G13A 5DC7A 4BZ9A 3F0RA 5FUEA 1ZZ1A 5G0XA 3EZPA 5EFBD 5ICNB 2VQJA 5D1DA 4QA2A 5G1BA 3EZTA 4LY1A 4QA5A 4CQFA 2V5WA 5EEIA 5DC8A 4ZUPA 1ZZ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QA0 A;  5G17 A;  5DC5 A;  5G1C A;  3EW8 A;  5EEM A;  4ZUM A;  5EFN A;  3Q9E A;  4BKX B;  5EF8 A;  5EEK A;  2VQM A;  1VKG A;  4ZUO A;  4RN1 A;  1T67 A;  2VQO A;  5EFJ D;  2VQW G;  4ZUN A;  3SFH A;  5G3W A;  5JI5 A;  5G11 A;  3C10 A;  3RQD A;  5EEN A;  1W22 A;  5G0Y A;  4QA6 A;  1ZZ0 A;  3MZ6 A;  4LXZ A;  5G0J A;  5G0I A;  3C0Y A;  4RN2 A;  1C3S A;  2V5X A;  5EEF A;  3ZNR A;  4RN0 A;  3MEN A;  1T64 A;  4BZ5 A;  5EFH A;  5DC6 A;  3F07 A;  5EFG A;  4QA4 A;  4BZ8 A;  3Q9B A;  5G0H A;  4CBY A;  5EF7 A;  5D1C A;  3SFF A;  4A69 A;  3ZNS A;  4QA3 A;  3Q9F A;  1T69 A;  5THT A;  5IX0 A;  5D1B A;  5THV A;  2VQV A;  2VCG A;  5EFK B;  5FCW A;  4BZ7 A;  3EWF A;  4CBT A;  3MAX A;  4ZUR A;  5G12 A;  2VQQ A;  5G10 A;  5BWZ A;  5G0G A;  5G1A A;  3MZ3 A;  4QA1 A;  5THS A;  3Q9C A;  5IWG A;  3C0Z A;  3F06 A;  5THU A;  4BZ6 A;  4QA7 A;  5LI3 A;  1C3R A;  2GH6 A;  4ZUQ A;  3MZ4 A;  1C3P A;  5A2S A;  3MZ7 A;  5G13 A;  5DC7 A;  4BZ9 A;  3F0R A;  5FUE A;  1ZZ1 A;  5G0X A;  3EZP A;  5EFB D;  5ICN B;  2VQJ A;  5D1D A;  4QA2 A;  5G1B A;  3EZT A;  4LY1 A;  4QA5 A;  4CQF A;  2V5W A;  5EEI A;  5DC8 A;  4ZUP A;  1ZZ3 A; 
#chains in the Genus database with same CATH topology
 4QA0 A;  5G17 A;  5DC5 A;  4IXV A;  5G1C A;  3EW8 A;  1HQG A;  5EEM A;  2CEV A;  4FCI A;  4ZUM A;  5EFN A;  3LP7 A;  3E9B A;  2PHO A;  1WVA A;  3CEV A;  3Q9E A;  4BKX B;  5EF8 A;  1P8R A;  2VQM A;  5EEK A;  1VKG A;  2PHA A;  2RLA A;  3F80 A;  3LHL A;  4HWW A;  4I06 A;  4IU5 A;  1T67 A;  4IU4 A;  4RN1 A;  1T4R A;  2VQO A;  4G3H A;  3NIO A;  4IE3 A;  1D3V A;  4Q3R C;  5EFJ D;  4ZUO A;  2VQW G;  4ZUN A;  3SFH A;  5G3W A;  4Q3R A;  4HZE A;  1GQ7 A;  4IXU A;  5JI5 A;  5CEV A;  5G11 A;  3C10 A;  3RQD A;  5EEN A;  1P8O A;  1HQ5 A;  1W22 A;  3M1R A;  4ITY A;  5G0Y A;  4GSZ A;  2AEB A;  1ZZ0 A;  4QA6 A;  3MZ6 A;  1TBJ A;  3RLA A;  1T4P A;  4LXZ A;  5G0J A;  5G0I A;  4GWD A;  3C0Y A;  4RN2 A;  1PQ3 A;  1T5F A;  4HXQ A;  1C3S A;  4CEV A;  2V5X A;  1P8M A;  5EEF A;  3ZNR A;  4RHI A;  4RN0 A;  1T4T A;  3MEN A;  3E8Q A;  1T64 A;  4Q3P A;  1R1O A;  3THE A;  4Q42 A;  1ZPG A;  4BZ5 A;  5EFH A;  3GN0 A;  5DC6 A;  4MYF A;  3F07 A;  3MMR A;  4QA4 A;  5EFG A;  1T5G A;  4BZ8 A;  5HJA A;  3PZL A;  4MYN A;  3Q9B A;  5G0H A;  4CBY A;  5EF7 A;  5D1C A;  3SFF A;  3TF3 A;  5EEI A;  2EF5 A;  4RHQ A;  3SL0 A;  4A69 A;  3ZNS A;  4GWC A;  4QA3 A;  4RLA A;  1P8Q A;  3E8Z A;  3GMZ A;  3Q9F A;  4MXR A;  3TH7 A;  4Q3V A;  1T69 A;  1TBH A;  2EIV A;  5THT A;  2EF4 A;  5IX0 A;  3KV2 A;  5D1B A;  3MFV A;  4Q40 A;  4GSM A;  2VQV A;  2ZAV A;  5THV A;  1HQX A;  2VCG A;  4IE2 A;  5EFK B;  5FCW A;  3SL1 A;  4BZ7 A;  2A0M A;  3EWF A;  4Q3T A;  4CBT A;  3MAX A;  4ZUR A;  5G12 A;  2VQQ A;  5G10 A;  4Q3S A;  5BWZ A;  5HJ9 A;  5G0G A;  4IU1 A;  1WVB A;  5G1A A;  3MZ3 A;  1P8P A;  4QA1 A;  5THS A;  3Q9C A;  5IWG A;  5RLA A;  1HQF A;  1T4S A;  4DZ4 A;  3C0Z A;  1ZPE A;  3F06 A;  5THU A;  4BZ6 A;  4QA7 A;  2PLL A;  5LI3 A;  1C3R A;  2GH6 A;  1RLA A;  3MJL A;  3MZ4 A;  4RHJ A;  4ZUQ A;  1C3P A;  4MYL A;  1WOG A;  5A2S A;  4RHK A;  4RHL A;  3E6V A;  4Q41 A;  3MZ7 A;  4FCK A;  5G13 A;  1GQ6 A;  5DC7 A;  4BZ9 A;  1WOH A;  3SKK A;  1P8S A;  3THH A;  3F0R A;  4IU0 A;  5FUE A;  1ZZ1 A;  5G0X A;  1HQH A;  3SJT A;  4MYK A;  4ZUP A;  3MFW A;  3NIP A;  3EZP A;  1WOI A;  3LP4 A;  4RHM A;  1TA1 A;  5EFB D;  5ICN B;  2VQJ A;  4IE1 A;  3THJ A;  1P8N A;  1XFK A;  4GSV A;  4QA2 A;  5D1D A;  5G1B A;  3EZT A;  4LY1 A;  4Q3U A;  4QA5 A;  4CQF A;  2V5W A;  3DJ8 A;  4Q3Q A;  5DC8 A;  1CEV A;  1TBL A;  3E6K A;  3NIQ A;  1ZZ3 A; 
#chains in the Genus database with same CATH homology
 4QA0 A;  5G17 A;  5DC5 A;  5G1C A;  3EW8 A;  5EEM A;  4ZUM A;  5EFN A;  3Q9E A;  4BKX B;  5EF8 A;  5EEK A;  2VQM A;  1VKG A;  4ZUO A;  4RN1 A;  1T67 A;  2VQO A;  5EFJ D;  2VQW G;  4ZUN A;  3SFH A;  5G3W A;  5JI5 A;  5G11 A;  3C10 A;  3RQD A;  5EEN A;  1W22 A;  5G0Y A;  4QA6 A;  1ZZ0 A;  3MZ6 A;  4LXZ A;  5G0J A;  5G0I A;  3C0Y A;  4RN2 A;  1C3S A;  2V5X A;  5EEF A;  3ZNR A;  4RN0 A;  3MEN A;  1T64 A;  4BZ5 A;  5EFH A;  5DC6 A;  3F07 A;  5EFG A;  4QA4 A;  4BZ8 A;  3Q9B A;  5G0H A;  4CBY A;  5EF7 A;  5D1C A;  3SFF A;  4A69 A;  3ZNS A;  4QA3 A;  3Q9F A;  1T69 A;  5THT A;  5IX0 A;  5D1B A;  5THV A;  2VQV A;  2VCG A;  5EFK B;  5FCW A;  4BZ7 A;  3EWF A;  4CBT A;  3MAX A;  4ZUR A;  5G12 A;  2VQQ A;  5G10 A;  5BWZ A;  5G0G A;  5G1A A;  3MZ3 A;  4QA1 A;  5THS A;  3Q9C A;  5IWG A;  3C0Z A;  3F06 A;  5THU A;  4BZ6 A;  4QA7 A;  5LI3 A;  1C3R A;  2GH6 A;  4ZUQ A;  3MZ4 A;  1C3P A;  5A2S A;  3MZ7 A;  5G13 A;  5DC7 A;  4BZ9 A;  3F0R A;  5FUE A;  1ZZ1 A;  5G0X A;  3EZP A;  5EFB D;  5ICN B;  2VQJ A;  5D1D A;  4QA2 A;  5G1B A;  3EZT A;  4LY1 A;  4QA5 A;  4CQF A;  2V5W A;  5EEI A;  5DC8 A;  4ZUP A;  1ZZ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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